Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_013402815.2 | NZ_CP058601 | NZ_CP058601.1 | Natrinema halophilum strain YPL8 chromosome; complete genome. | 858659 | 858285 | 1319801 | 1323051 | 0 | 4359796 | 0.2 | 0.2 | 0.3 | 0.3 | 0 | 0.61 | 0.9431 | 0.0014 | 0.9986 | 1.9672 | 2005 | 2121 | 4126 | 726078 | 616531 | 1074594 | 1088227 | 0 | 3505430 | 0.21 | 0.18 | 0.3 | 0.31 | 0 | 0.61 | 0.8869 | 0.1872 | 0.8388 | 1.9485 | 2562 | 1947 | 2057 | 4004 | 712924 | 605133 | 1056369 | 1069211 | 0 | 3443637 | 0.21 | 0.18 | 0.3 | 0.31 | 0 | 0.61 | 0.8869 | 0.1879 | 0.8384 | 1.9484 | 2277 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 0 | 2 | 153 | 106 | 253 | 277 | 0 | 789 | 0.19 | 0.13 | 0.32 | 0.35 | 0 | 0.68 | 0.8857 | 0.2196 | 0.8087 | 1.9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 25 | 23 | 48 | 658 | 725 | 1070 | 1174 | 0 | 3627 | 0.18 | 0.2 | 0.3 | 0.32 | 0 | 0.62 | 0.8783 | 0.1876 | 0.8384 | 1.9415 | 0 | 3 | 3 | 6 | 2227 | 1641 | 2298 | 2868 | 0 | 9034 | 0.23 | 0.17 | 0.29 | 0.31 | 0 | 0.6 | 0.9068 | 0.2428 | 0.7843 | 1.9553 | 0 | 19723 | 11879 | 6646 | 6584 | 17754 | 56200 | 11388 | 8531 | 12697 | 13505 | 6326 | 42323 | 4414 | 35813 | 6475 | 23452 | 3803 | 16931 | 30439 | 7616 | 24961 | 17717 | 52540 | 27705 | 22265 | 28256 | 3616 | 7630 | 6658 | 17449 | 41595 | 8295 | 60395 | 3859 | 6023 | 69622 | 19198 | 15521 | 24756 | 41300 | 14870 | 23407 | 9940 | 40564 | 4036 | 13446 | 19657 | 2800 | 4728 | 3780 | 25808 | 44460 | 2325 | 3102 | 2524 | 6090 | 794 | 20358 | 27455 | 8012 | 7199 | 1075 | 2135 | 17454 |
GCF_013402815.2 | NZ_CP084880 | NZ_CP084880.1 | Natrinema halophilum strain YPL8 plasmid unnamed1; complete sequence. | 93716 | 96301 | 118565 | 116819 | 0 | 425401 | 0.22 | 0.23 | 0.28 | 0.27 | 0 | 0.55 | 0.9495 | 0.021 | 0.9792 | 1.9917 | 158 | 177 | 335 | 66149 | 54945 | 78480 | 82438 | 0 | 282012 | 0.23 | 0.2 | 0.28 | 0.29 | 0 | 0.57 | 0.8976 | 0.1794 | 0.8426 | 1.9695 | 332 | 155 | 167 | 322 | 64726 | 53563 | 76632 | 80551 | 0 | 275472 | 0.23 | 0.2 | 0.28 | 0.29 | 0 | 0.57 | 0.8976 | 0.1808 | 0.8415 | 1.9691 | 328 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1814 | 1102 | 781 | 822 | 1783 | 4010 | 1186 | 1170 | 1027 | 1029 | 919 | 4003 | 618 | 2468 | 727 | 1893 | 536 | 1424 | 2388 | 731 | 1534 | 1670 | 3512 | 2891 | 1928 | 1775 | 438 | 735 | 778 | 1633 | 3336 | 925 | 3776 | 585 | 882 | 4711 | 1467 | 967 | 1865 | 2664 | 1107 | 1278 | 1226 | 2649 | 323 | 1312 | 1514 | 338 | 449 | 520 | 1724 | 2603 | 379 | 428 | 287 | 800 | 63 | 1370 | 1752 | 755 | 899 | 90 | 169 | 1286 |
GCF_013402815.2 | NZ_CP084881 | NZ_CP084881.1 | Natrinema halophilum strain YPL8 plasmid unnamed2; complete sequence. | 10636 | 12717 | 16973 | 16670 | 0 | 56996 | 0.19 | 0.22 | 0.3 | 0.29 | 0 | 0.59 | 0.9327 | 0.0981 | 0.9093 | 1.974 | 14 | 70 | 84 | 11119 | 8596 | 14460 | 15256 | 0 | 49431 | 0.23 | 0.18 | 0.29 | 0.31 | 0 | 0.59 | 0.8882 | 0.2069 | 0.8224 | 1.9552 | 134 | 14 | 68 | 82 | 11029 | 8530 | 14345 | 15137 | 0 | 49041 | 0.23 | 0.18 | 0.29 | 0.31 | 0 | 0.59 | 0.8886 | 0.2082 | 0.8214 | 1.9551 | 130 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 1 | 1 | 13 | 15 | 23 | 24 | 0 | 75 | 0.17 | 0.2 | 0.31 | 0.32 | 0 | 0.63 | 0.8549 | 0.0927 | 0.9125 | 1.9516 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 260 | 258 | 74 | 140 | 277 | 1001 | 231 | 117 | 141 | 248 | 83 | 465 | 121 | 501 | 128 | 400 | 75 | 206 | 327 | 91 | 287 | 277 | 625 | 578 | 408 | 308 | 57 | 79 | 100 | 216 | 577 | 146 | 697 | 52 | 162 | 989 | 284 | 169 | 342 | 467 | 199 | 300 | 178 | 553 | 89 | 200 | 262 | 37 | 53 | 87 | 371 | 441 | 38 | 91 | 51 | 188 | 10 | 313 | 390 | 143 | 116 | 25 | 47 | 201 |