Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_000230735.2 | NC_019962 | NC_019962.1 | Natrinema pellirubrum DSM 15624; complete sequence. | 663871 | 665379 | 1232223 | 1229006 | 0 | 3790479 | 0.18 | 0.18 | 0.33 | 0.32 | 0 | 0.65 | 0.9272 | 0.0024 | 0.9976 | 1.9347 | 1900 | 1845 | 3745 | 587035 | 501848 | 1057594 | 1050900 | 0 | 3197377 | 0.19 | 0.16 | 0.33 | 0.33 | 0 | 0.65 | 0.8744 | 0.1881 | 0.839 | 1.9122 | 2042 | 1846 | 1801 | 3647 | 577593 | 493770 | 1044074 | 1036543 | 0 | 3151980 | 0.19 | 0.16 | 0.33 | 0.33 | 0 | 0.66 | 0.8741 | 0.1886 | 0.8387 | 1.9115 | 1848 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 1 | 1 | 2 | 165 | 115 | 327 | 340 | 0 | 947 | 0.17 | 0.12 | 0.34 | 0.36 | 0 | 0.7 | 0.8812 | 0.1877 | 0.838 | 1.8696 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 30 | 19 | 49 | 662 | 731 | 1101 | 1204 | 0 | 3698 | 0.18 | 0.2 | 0.3 | 0.33 | 0 | 0.62 | 0.8776 | 0.1796 | 0.8443 | 1.9395 | 0 | 3 | 7 | 10 | 3395 | 2489 | 3499 | 4290 | 0 | 13673 | 0.23 | 0.18 | 0.28 | 0.31 | 0 | 0.59 | 0.908 | 0.1977 | 0.8232 | 1.9656 | 0 | 17377 | 12020 | 3275 | 3468 | 9264 | 67343 | 5624 | 3914 | 10780 | 11711 | 2574 | 25673 | 2154 | 30741 | 4321 | 20646 | 1569 | 14869 | 29008 | 4239 | 30342 | 10275 | 50407 | 17061 | 20101 | 30718 | 2088 | 5424 | 4502 | 8946 | 40151 | 4286 | 66623 | 1360 | 3083 | 73841 | 17479 | 18459 | 23651 | 52782 | 13922 | 25581 | 6139 | 48134 | 2986 | 6635 | 21526 | 1263 | 4983 | 2578 | 23744 | 48633 | 1455 | 1385 | 1330 | 3147 | 818 | 25810 | 26089 | 5040 | 4157 | 821 | 2016 | 10317 |
GCF_000230735.2 | NC_019967 | NC_019967.1 | Natrinema pellirubrum DSM 15624 plasmid pNATPE01; complete sequence. | 60502 | 63215 | 82223 | 81860 | 0 | 287800 | 0.21 | 0.22 | 0.29 | 0.28 | 0 | 0.57 | 0.9441 | 0.0241 | 0.9763 | 1.9856 | 97 | 151 | 248 | 46673 | 38173 | 57880 | 59337 | 0 | 202063 | 0.24 | 0.19 | 0.28 | 0.29 | 0 | 0.58 | 0.8951 | 0.2028 | 0.8252 | 1.964 | 133 | 92 | 143 | 235 | 44307 | 36320 | 54835 | 56406 | 0 | 191868 | 0.24 | 0.19 | 0.28 | 0.29 | 0 | 0.58 | 0.8954 | 0.2029 | 0.8253 | 1.9642 | 135 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 856 | 1065 | 364 | 561 | 1052 | 3510 | 916 | 692 | 565 | 942 | 562 | 2324 | 555 | 1739 | 593 | 1274 | 390 | 1042 | 1556 | 461 | 1229 | 873 | 2660 | 1892 | 1638 | 1224 | 287 | 463 | 565 | 778 | 2004 | 793 | 2343 | 219 | 751 | 3513 | 1121 | 652 | 1471 | 1657 | 683 | 1297 | 747 | 1492 | 245 | 932 | 1003 | 227 | 342 | 408 | 1097 | 1857 | 244 | 330 | 157 | 656 | 56 | 1293 | 1162 | 727 | 679 | 73 | 113 | 982 |
GCF_000230735.2 | NC_019963 | NC_019963.1 | Natrinema pellirubrum DSM 15624 plasmid pNATPE02; complete sequence. | 56764 | 58131 | 80768 | 80158 | 0 | 275821 | 0.21 | 0.21 | 0.29 | 0.29 | 0 | 0.58 | 0.9443 | 0.0157 | 0.9845 | 1.9798 | 85 | 150 | 235 | 49748 | 42255 | 66691 | 67347 | 0 | 226041 | 0.22 | 0.19 | 0.29 | 0.3 | 0 | 0.59 | 0.8952 | 0.1834 | 0.8401 | 1.9608 | 131 | 82 | 147 | 229 | 48838 | 41416 | 65534 | 66212 | 0 | 222000 | 0.22 | 0.19 | 0.29 | 0.3 | 0 | 0.59 | 0.895 | 0.1855 | 0.8384 | 1.9603 | 130 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1250 | 1050 | 369 | 646 | 1125 | 4169 | 1021 | 770 | 731 | 1019 | 615 | 2575 | 513 | 1976 | 598 | 1487 | 352 | 1188 | 2087 | 409 | 1456 | 979 | 3395 | 2075 | 1922 | 1523 | 353 | 581 | 581 | 854 | 2436 | 757 | 3213 | 183 | 647 | 4313 | 1245 | 872 | 1688 | 2232 | 880 | 1433 | 682 | 1968 | 277 | 890 | 1251 | 167 | 346 | 406 | 1317 | 2263 | 216 | 325 | 134 | 634 | 45 | 1435 | 1452 | 747 | 674 | 72 | 112 | 1019 |