Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_013456555.2 | NZ_CP059154 | NZ_CP059154.1 | Natrinema zhouii strain YPL30 chromosome; complete genome. | 690402 | 688009 | 1201401 | 1199839 | 0 | 3779651 | 0.18 | 0.18 | 0.32 | 0.32 | 0 | 0.64 | 0.9341 | 0.0024 | 0.9976 | 1.9465 | 1836 | 1905 | 3741 | 606356 | 510198 | 1025030 | 1029200 | 0 | 3170784 | 0.19 | 0.16 | 0.32 | 0.32 | 0 | 0.64 | 0.8777 | 0.1906 | 0.8365 | 1.926 | 2026 | 1789 | 1854 | 3643 | 596639 | 501470 | 1010817 | 1014227 | 0 | 3123153 | 0.19 | 0.16 | 0.32 | 0.32 | 0 | 0.64 | 0.8776 | 0.1909 | 0.8363 | 1.9257 | 1870 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 2 | 0 | 2 | 159 | 113 | 290 | 310 | 0 | 872 | 0.18 | 0.13 | 0.33 | 0.36 | 0 | 0.69 | 0.8853 | 0.1963 | 0.8282 | 1.8897 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 20 | 29 | 49 | 662 | 742 | 1095 | 1198 | 0 | 3697 | 0.18 | 0.2 | 0.3 | 0.33 | 0 | 0.62 | 0.8721 | 0.1997 | 0.8296 | 1.9376 | 0 | 7 | 3 | 10 | 3449 | 2569 | 3418 | 4234 | 0 | 13670 | 0.23 | 0.18 | 0.28 | 0.31 | 0 | 0.59 | 0.9063 | 0.201 | 0.8203 | 1.9673 | 0 | 18041 | 12237 | 3298 | 4046 | 9868 | 67027 | 6616 | 5748 | 11732 | 11621 | 3939 | 27769 | 2550 | 32720 | 4659 | 21288 | 2004 | 16412 | 29901 | 3993 | 26759 | 12206 | 53403 | 20183 | 21661 | 27425 | 2062 | 4463 | 4211 | 11891 | 39990 | 3769 | 60740 | 1577 | 3346 | 69472 | 17969 | 16734 | 23621 | 43781 | 14761 | 25213 | 5999 | 44173 | 3665 | 7931 | 18669 | 1617 | 3933 | 2312 | 23753 | 48603 | 1405 | 1491 | 1506 | 3107 | 798 | 20918 | 26163 | 4435 | 3965 | 931 | 1921 | 13049 |
GCF_013456555.2 | NZ_CP084882 | NZ_CP084882.1 | Natrinema zhouii strain YPL30 plasmid unnamed1; complete sequence. | 115737 | 115278 | 137712 | 139313 | 0 | 508040 | 0.23 | 0.23 | 0.27 | 0.27 | 0 | 0.55 | 0.95 | 0.0078 | 0.9923 | 1.9941 | 251 | 203 | 454 | 73760 | 64537 | 87657 | 90496 | 0 | 316450 | 0.24 | 0.2 | 0.27 | 0.28 | 0 | 0.56 | 0.8959 | 0.1986 | 0.828 | 1.9693 | 287 | 243 | 200 | 443 | 72858 | 63694 | 86566 | 89380 | 0 | 312498 | 0.24 | 0.2 | 0.27 | 0.28 | 0 | 0.56 | 0.896 | 0.199 | 0.8277 | 1.9692 | 247 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1 | 0 | 1 | 16 | 18 | 21 | 23 | 0 | 78 | 0.21 | 0.23 | 0.27 | 0.29 | 0 | 0.56 | 0.8305 | 0.1631 | 0.8556 | 1.981 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1931 | 1430 | 868 | 1093 | 1951 | 5197 | 1524 | 1501 | 906 | 1330 | 1055 | 3692 | 882 | 2646 | 932 | 1943 | 613 | 1604 | 2817 | 930 | 2028 | 1717 | 4296 | 3196 | 2168 | 1954 | 646 | 883 | 1091 | 1693 | 3580 | 1325 | 4002 | 572 | 1342 | 4731 | 1632 | 1067 | 2226 | 2595 | 1206 | 1565 | 1287 | 2607 | 337 | 1570 | 1648 | 432 | 534 | 750 | 1813 | 2903 | 495 | 564 | 257 | 1097 | 107 | 1553 | 1945 | 950 | 1150 | 129 | 207 | 1470 |
GCF_013456555.2 | NZ_CP084883 | NZ_CP084883.1 | Natrinema zhouii strain YPL30 plasmid unnamed2; complete sequence. | 94207 | 94574 | 137937 | 138605 | 0 | 465323 | 0.2 | 0.2 | 0.3 | 0.3 | 0 | 0.59 | 0.9427 | 0.0044 | 0.9956 | 1.9742 | 185 | 205 | 390 | 72058 | 62385 | 106509 | 108146 | 0 | 349098 | 0.21 | 0.18 | 0.3 | 0.31 | 0 | 0.6 | 0.8901 | 0.1863 | 0.8387 | 1.9507 | 279 | 182 | 196 | 378 | 69871 | 60526 | 103333 | 104871 | 0 | 338601 | 0.21 | 0.18 | 0.3 | 0.31 | 0 | 0.61 | 0.8902 | 0.1856 | 0.8392 | 1.9505 | 264 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2173 | 1392 | 565 | 716 | 1528 | 6036 | 1101 | 903 | 1203 | 1337 | 645 | 3401 | 531 | 3476 | 731 | 2459 | 313 | 1737 | 3319 | 601 | 2506 | 1733 | 5296 | 2617 | 2285 | 2516 | 423 | 647 | 683 | 1732 | 4600 | 792 | 5852 | 339 | 726 | 6403 | 2009 | 1477 | 2681 | 3711 | 1455 | 2022 | 830 | 4035 | 404 | 1286 | 2025 | 269 | 489 | 437 | 2345 | 4648 | 241 | 322 | 217 | 600 | 78 | 1938 | 2842 | 704 | 710 | 88 | 213 | 1473 |
GCF_013456555.2 | NZ_CP084884 | NZ_CP084884.1 | Natrinema zhouii strain YPL30 plasmid unnamed3; complete sequence. | 78230 | 75475 | 102095 | 103125 | 0 | 358925 | 0.22 | 0.21 | 0.28 | 0.29 | 0 | 0.57 | 0.9466 | 0.0229 | 0.9774 | 1.985 | 183 | 132 | 315 | 59641 | 51492 | 77555 | 79685 | 0 | 268373 | 0.22 | 0.19 | 0.29 | 0.3 | 0 | 0.59 | 0.8939 | 0.1856 | 0.8388 | 1.9619 | 195 | 178 | 128 | 306 | 58432 | 50505 | 76064 | 78105 | 0 | 263106 | 0.22 | 0.19 | 0.29 | 0.3 | 0 | 0.59 | 0.8941 | 0.186 | 0.8387 | 1.9616 | 195 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 1 | 1 | 13 | 17 | 21 | 24 | 0 | 75 | 0.17 | 0.23 | 0.28 | 0.32 | 0 | 0.6 | 0.8305 | 0.1922 | 0.8375 | 1.9588 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1627 | 1231 | 570 | 781 | 1588 | 4680 | 1123 | 979 | 847 | 1124 | 745 | 2986 | 544 | 2432 | 701 | 1797 | 462 | 1285 | 2455 | 626 | 1778 | 1331 | 3895 | 2409 | 1928 | 1697 | 451 | 638 | 750 | 1385 | 3230 | 966 | 3769 | 325 | 802 | 4596 | 1385 | 943 | 1950 | 2485 | 1082 | 1402 | 818 | 2500 | 296 | 1160 | 1445 | 222 | 409 | 476 | 1639 | 2862 | 303 | 407 | 163 | 760 | 90 | 1471 | 1822 | 769 | 820 | 73 | 148 | 1268 |
GCF_013456555.2 | NZ_CP084885 | NZ_CP084885.1 | Natrinema zhouii strain YPL30 plasmid unnamed4; complete sequence. | 50135 | 51722 | 61543 | 60973 | 0 | 224373 | 0.22 | 0.23 | 0.27 | 0.27 | 0 | 0.55 | 0.9503 | 0.0202 | 0.98 | 1.9938 | 70 | 111 | 181 | 34968 | 29274 | 39914 | 42122 | 0 | 146278 | 0.24 | 0.2 | 0.27 | 0.29 | 0 | 0.56 | 0.8987 | 0.1957 | 0.8303 | 1.972 | 108 | 69 | 108 | 177 | 34559 | 28913 | 39480 | 41636 | 0 | 144588 | 0.24 | 0.2 | 0.28 | 0.29 | 0 | 0.56 | 0.8986 | 0.1965 | 0.8296 | 1.9718 | 109 | 1 | 0 | 0 | 1 | 0 | 2 | 0.5 | 0 | 0 | 0.5 | 0 | 0.5 | 1 | 0.6667 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 882 | 725 | 347 | 495 | 883 | 2629 | 734 | 711 | 409 | 660 | 505 | 1870 | 452 | 1165 | 469 | 974 | 313 | 839 | 1216 | 383 | 896 | 701 | 1936 | 1555 | 1146 | 828 | 282 | 396 | 475 | 711 | 1593 | 648 | 1672 | 191 | 641 | 2188 | 798 | 446 | 940 | 1129 | 581 | 707 | 607 | 1100 | 202 | 720 | 806 | 179 | 237 | 392 | 775 | 1255 | 218 | 269 | 114 | 572 | 45 | 778 | 860 | 516 | 614 | 51 | 88 | 675 |