GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_900104065.1	NZ_FNLC01000009	NZ_FNLC01000009.1	Natronobacterium texcoconense strain DSM 24767; whole genome shotgun sequence.	299	233	333	445	0	1310	0.23	0.18	0.25	0.34	0.59	0.9212	0.268	0.7638	1.961	1	0	1	297	232	329	441	1299	0.23	0.18	0.25	0.34	0.59	0.9212	0.2683	0.7636	1.9615	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	297	232	329	441	1299	0.23	0.18	0.25	0.34	0	0.59	0.9212	0.2683	0.7636	1.9615	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCF_900104065.1	NZ_FNLC01000008	NZ_FNLC01000008.1	Natronobacterium texcoconense strain DSM 24767; whole genome shotgun sequence.	16267	16670	27268	27831	0	88036	0.18	0.19	0.31	0.32	0.63	0.9248	0.0225	0.9778	1.9537	37	38	75	14855	12634	24170	24261	75920	0.2	0.17	0.31	0.32	0.63	0.8809	0.1815	0.8424	1.9343	40	36	38	74	14845	12618	24152	24234	75849	0.2	0.17	0.31	0.32	0	0.63	0.881	0.1781	0.845	1.9346	40	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	10	16	18	27	71	0.14	0.23	0.25	0.38	0	0.63	0.8682	0.4308	0.6458	1.9151	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	450	264	104	119	326	1633	188	124	271	309	64	800	52	761	122	582	53	347	816	95	680	364	1261	375	505	619	52	110	74	351	1008	124	1700	53	78	1778	446	358	619	1026	361	460	162	1066	51	176	411	35	108	53	584	931	34	41	41	118	21	441	591	154	57	21	32	273
GCF_900104065.1	NZ_FNLC01000006	NZ_FNLC01000006.1	Natronobacterium texcoconense strain DSM 24767; whole genome shotgun sequence.	29032	28480	47511	47872	0	152895	0.19	0.19	0.31	0.31	0.62	0.922	0.0134	0.9867	1.9552	89	66	155	25198	21166	41186	40903	128453	0.2	0.17	0.32	0.32	0.63	0.8798	0.1902	0.836	1.9331	88	88	65	153	25150	21129	41117	40830	128226	0.2	0.17	0.32	0.32	0	0.63	0.88	0.1908	0.8355	1.933	88	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	14	15	27	27	83	0.17	0.18	0.33	0.33	0	0.65	0.8682	0.0345	0.9667	1.9332	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	649	364	178	218	690	2720	339	234	475	505	106	1456	96	1365	216	808	90	638	1284	168	1173	553	2095	657	899	1087	96	187	165	533	1470	235	2712	82	172	3045	750	704	1015	1597	542	810	262	1586	96	349	651	81	200	87	992	1656	75	102	81	239	36	834	1075	284	162	43	74	599
GCF_900104065.1	NZ_FNLC01000004	NZ_FNLC01000004.1	Natronobacterium texcoconense strain DSM 24767; whole genome shotgun sequence.	40369	42995	73008	71907	0	228279	0.18	0.19	0.32	0.31	0.63	0.9226	0.0391	0.9619	1.9466	103	128	231	38743	32177	64914	64379	200213	0.2	0.16	0.32	0.32	0.64	0.8775	0.1985	0.8305	1.9298	143	102	123	225	38248	31766	64169	63619	197802	0.2	0.16	0.32	0.32	0	0.64	0.8771	0.1988	0.8305	1.9292	143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	31	33	42	49	155	0.2	0.21	0.27	0.32	0	0.59	0.9043	0.1061	0.9016	1.9741	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1115	660	251	274	947	4250	550	290	708	745	121	2212	121	2060	320	1283	140	931	1891	221	1757	904	3413	924	1454	1739	140	283	189	772	2370	245	4269	100	219	4721	1134	1031	1636	2800	868	1384	404	2660	151	523	994	98	306	116	1505	2761	76	131	85	309	51	1121	1554	440	169	62	112	864
GCF_900104065.1	NZ_FNLC01000003	NZ_FNLC01000003.1	Natronobacterium texcoconense strain DSM 24767; whole genome shotgun sequence.	92645	91444	154387	156006	0	494482	0.19	0.18	0.31	0.32	0.63	0.9286	0.0117	0.9883	1.9524	250	258	508	83415	68816	134924	135792	422947	0.2	0.17	0.32	0.32	0.63	0.8781	0.1985	0.8301	1.9326	193	241	250	491	82605	68035	133609	134452	418701	0.2	0.17	0.32	0.32	0	0.63	0.878	0.198	0.8307	1.9323	183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	4	9	111	141	200	220	672	0.17	0.21	0.29	0.32	0	0.62	0.8577	0.2065	0.8204	1.9452	0	1	1	67	62	74	96	299	0.22	0.21	0.25	0.32	0	0.57	0.9251	0.1682	0.8481	1.979	2434	1452	632	628	1868	9011	1110	674	1497	1568	320	4837	288	4344	675	2809	271	2055	4052	511	3615	1929	6957	2192	2989	3653	293	623	441	1760	5267	607	9008	253	480	9806	2352	2096	3248	5609	1829	2775	969	5606	336	1086	2158	209	614	287	3209	5451	161	283	246	693	143	2539	3332	869	400	106	242	1810
GCF_900104065.1	NZ_FNLC01000005	NZ_FNLC01000005.1	Natronobacterium texcoconense strain DSM 24767; whole genome shotgun sequence.	35837	38999	64997	63795	0	203628	0.18	0.19	0.32	0.31	0.63	0.9234	0.0516	0.9502	1.9482	99	128	227	35168	28269	56740	57632	177809	0.2	0.16	0.32	0.32	0.64	0.8755	0.203	0.8267	1.9304	101	97	125	222	34587	27792	55721	56599	174699	0.2	0.16	0.32	0.32	0	0.64	0.8755	0.2036	0.8264	1.9306	101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	24	25	52	49	150	0.16	0.17	0.35	0.33	0	0.67	0.8806	0.2101	0.8125	1.9024	1	0	1	24	19	42	37	122	0.2	0.16	0.34	0.3	0	0.65	0.8747	0.1796	0.8363	1.9309	903	543	239	255	766	3964	426	286	631	602	130	2057	110	1857	309	1092	109	864	1699	217	1531	816	2800	935	1255	1533	118	218	167	729	2205	250	3828	84	187	4553	1035	897	1253	2140	808	1241	348	2303	144	402	859	90	252	102	1334	2299	56	105	76	253	69	1144	1324	317	163	64	89	798
GCF_900104065.1	NZ_FNLC01000002	NZ_FNLC01000002.1	Natronobacterium texcoconense strain DSM 24767; whole genome shotgun sequence.	231091	234764	389863	389936	80	1245734	0.19	0.19	0.31	0.31	0.63	0.9321	0.008	0.9921	1.9536	599	656	1255	213622	178407	344218	344774	1081021	0.2	0.17	0.31	0.32	0.63	0.879	0.1948	0.8334	1.9336	784	588	638	1226	210944	175923	339744	340366	1066977	0.2	0.17	0.31	0.32	0	0.63	0.8789	0.1963	0.8323	1.9332	754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	11	13	196	196	306	316	1014	0.19	0.19	0.3	0.31	0	0.62	0.8755	0.0914	0.9164	1.9508	2	0	2	50	31	68	65	214	0.24	0.14	0.31	0.3	0	0.62	0.8747	0.2925	0.7657	1.9335	5785	3796	1600	1549	4871	22612	2730	1792	3780	4127	1014	11697	825	11011	1803	7064	829	5060	10484	1446	9498	4694	17880	5534	7531	8680	881	1664	1321	4721	13125	1705	22436	693	1303	25319	6266	5283	8853	13573	4591	7198	2477	13790	872	2895	5484	669	1722	784	7965	13889	464	798	623	1772	277	6830	8491	2321	1224	315	634	4739
GCF_900104065.1	NZ_FNLC01000007	NZ_FNLC01000007.1	Natronobacterium texcoconense strain DSM 24767; whole genome shotgun sequence.	24085	25550	44113	43361	0	137109	0.18	0.19	0.32	0.32	0.64	0.9222	0.0381	0.9628	1.9441	56	72	128	22898	19262	38620	38871	119651	0.2	0.17	0.32	0.32	0.64	0.8769	0.2011	0.8289	1.9289	79	55	71	126	22763	19124	38411	38676	118974	0.2	0.16	0.32	0.32	0	0.64	0.8766	0.2015	0.8288	1.9283	79	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	619	365	162	144	517	2578	257	161	409	445	82	1255	56	1302	188	768	74	598	1183	133	1109	506	2094	514	826	1013	102	179	116	502	1512	165	2589	65	119	2859	638	564	938	1575	515	807	268	1647	78	307	612	78	166	59	957	1669	49	59	70	177	29	859	997	257	95	37	60	525
GCF_900104065.1	NZ_FNLC01000001	NZ_FNLC01000001.1	Natronobacterium texcoconense strain DSM 24767; whole genome shotgun sequence.	267401	272614	459504	458876	0	1458395	0.18	0.19	0.32	0.31	0.63	0.9306	0.0103	0.9898	1.9509	726	772	1498	252878	207055	408361	410101	1278395	0.2	0.17	0.32	0.32	0.64	0.878	0.1988	0.8299	1.9319	865	711	753	1464	249564	204196	403764	405455	1262979	0.2	0.17	0.32	0.32	0	0.64	0.8778	0.1991	0.8298	1.9316	849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	166	105	264	290	825	0.2	0.13	0.32	0.35	0	0.67	0.8904	0.2635	0.7775	1.8965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10	9	19	262	285	413	466	1426	0.18	0.2	0.29	0.33	0	0.62	0.8722	0.2152	0.8152	1.9445	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7236	4434	1783	1818	5762	27678	3153	1913	4446	4695	1022	14010	866	12745	2026	8498	757	6066	12059	1614	11094	5473	21237	6323	9039	10550	946	1867	1347	5313	15565	1929	26735	764	1486	30484	7697	6277	10354	16467	5310	8735	2902	16922	1065	3144	6395	757	2127	796	9414	16491	588	826	765	2094	389	8302	9871	2725	1308	374	701	5464