Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_001971705.1 | NZ_CP019327 | NZ_CP019327.1 | Natronorubrum daqingense strain JX313 chromosome; complete genome. | 652349 | 648148 | 1047457 | 1049483 | 0 | 3397437 | 0.19 | 0.19 | 0.31 | 0.31 | 0 | 0.62 | 0.934 | 0.0042 | 0.9958 | 1.96 | 1632 | 1680 | 3312 | 592476 | 489612 | 916089 | 909468 | 0 | 2907645 | 0.21 | 0.17 | 0.31 | 0.31 | 0 | 0.62 | 0.8821 | 0.1955 | 0.8321 | 1.9405 | 1411 | 1590 | 1640 | 3230 | 584005 | 482545 | 904405 | 897225 | 0 | 2868180 | 0.21 | 0.17 | 0.31 | 0.31 | 0 | 0.62 | 0.882 | 0.1961 | 0.8317 | 1.9403 | 1357 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 2 | 2 | 160 | 121 | 278 | 304 | 0 | 863 | 0.18 | 0.14 | 0.32 | 0.36 | 0 | 0.68 | 0.8881 | 0.1794 | 0.839 | 1.8966 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 23 | 23 | 46 | 645 | 697 | 1024 | 1118 | 0 | 3484 | 0.19 | 0.2 | 0.29 | 0.32 | 0 | 0.62 | 0.8758 | 0.1826 | 0.8418 | 1.9453 | 0 | 3 | 3 | 6 | 2204 | 1674 | 2266 | 2888 | 0 | 9032 | 0.22 | 0.18 | 0.28 | 0.31 | 0 | 0.59 | 0.9138 | 0.2146 | 0.8082 | 1.9612 | 0 | 16736 | 9422 | 3404 | 4024 | 12784 | 57675 | 7471 | 7757 | 10297 | 10595 | 3852 | 33719 | 2932 | 32655 | 5673 | 18728 | 2696 | 14704 | 26666 | 4868 | 16263 | 12960 | 52327 | 17633 | 17596 | 21820 | 1875 | 7242 | 3527 | 12762 | 34489 | 4614 | 54830 | 1341 | 3675 | 65920 | 18252 | 13856 | 22502 | 36385 | 12346 | 20459 | 7171 | 38009 | 2504 | 9113 | 14215 | 1885 | 4508 | 1706 | 22430 | 39660 | 2284 | 1734 | 1220 | 5603 | 547 | 11566 | 21252 | 5615 | 6648 | 1172 | 1511 | 16375 |
GCF_001971705.1 | NZ_CP019328 | NZ_CP019328.1 | Natronorubrum daqingense strain JX313 plasmid unnamed1; complete sequence. | 39764 | 39274 | 61812 | 61681 | 0 | 202531 | 0.2 | 0.19 | 0.31 | 0.3 | 0 | 0.61 | 0.9264 | 0.0073 | 0.9928 | 1.965 | 93 | 94 | 187 | 33757 | 28430 | 52478 | 50776 | 0 | 165441 | 0.21 | 0.17 | 0.31 | 0.3 | 0 | 0.62 | 0.8821 | 0.1972 | 0.8326 | 1.9418 | 131 | 93 | 93 | 186 | 33379 | 28172 | 51841 | 50168 | 0 | 163560 | 0.21 | 0.17 | 0.31 | 0.3 | 0 | 0.62 | 0.8821 | 0.1972 | 0.8327 | 1.942 | 131 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 814 | 516 | 215 | 250 | 727 | 2918 | 453 | 481 | 667 | 538 | 251 | 1796 | 206 | 1954 | 334 | 1092 | 172 | 907 | 1495 | 313 | 1003 | 691 | 3004 | 1039 | 981 | 1178 | 112 | 415 | 236 | 731 | 1941 | 288 | 3033 | 93 | 247 | 3609 | 1020 | 746 | 1322 | 1992 | 757 | 1026 | 447 | 2081 | 152 | 560 | 840 | 143 | 243 | 116 | 1384 | 2179 | 146 | 127 | 69 | 422 | 39 | 725 | 1315 | 323 | 428 | 71 | 76 | 1071 |
GCF_001971705.1 | NZ_CP019329 | NZ_CP019329.1 | Natronorubrum daqingense strain JX313 plasmid unnamed2; complete sequence. | 39350 | 40269 | 50418 | 50798 | 0 | 180835 | 0.22 | 0.22 | 0.28 | 0.28 | 0 | 0.56 | 0.9458 | 0.0153 | 0.9848 | 1.9896 | 90 | 104 | 194 | 34960 | 28698 | 41254 | 43174 | 0 | 148086 | 0.24 | 0.19 | 0.28 | 0.29 | 0 | 0.57 | 0.8957 | 0.2003 | 0.8284 | 1.9683 | 356 | 89 | 101 | 190 | 34022 | 27882 | 40239 | 42034 | 0 | 144177 | 0.24 | 0.19 | 0.28 | 0.29 | 0 | 0.57 | 0.8955 | 0.2015 | 0.8275 | 1.9681 | 303 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 790 | 661 | 315 | 397 | 924 | 2576 | 673 | 629 | 424 | 698 | 428 | 1898 | 386 | 1391 | 416 | 1034 | 268 | 860 | 1221 | 351 | 865 | 750 | 1886 | 1693 | 907 | 906 | 221 | 410 | 411 | 610 | 1553 | 539 | 1622 | 159 | 577 | 2673 | 863 | 483 | 1057 | 1167 | 518 | 834 | 578 | 1272 | 208 | 744 | 732 | 124 | 270 | 265 | 918 | 1214 | 177 | 227 | 90 | 605 | 39 | 710 | 862 | 490 | 569 | 55 | 96 | 770 |
GCF_001971705.1 | NZ_CP019330 | NZ_CP019330.1 | Natronorubrum daqingense strain JX313 plasmid unnamed3; complete sequence. | 11510 | 11772 | 15766 | 15945 | 0 | 54993 | 0.21 | 0.21 | 0.29 | 0.29 | 0 | 0.58 | 0.9295 | 0.0169 | 0.9833 | 1.9829 | 34 | 36 | 70 | 10929 | 8299 | 13371 | 13919 | 0 | 46518 | 0.24 | 0.18 | 0.28 | 0.3 | 0 | 0.59 | 0.8832 | 0.2555 | 0.7862 | 1.9572 | 122 | 33 | 36 | 69 | 10500 | 7970 | 13025 | 13484 | 0 | 44979 | 0.24 | 0.18 | 0.28 | 0.3 | 0 | 0.59 | 0.8826 | 0.2556 | 0.7863 | 1.9568 | 122 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 242 | 139 | 68 | 132 | 300 | 847 | 161 | 146 | 135 | 216 | 109 | 622 | 105 | 452 | 118 | 317 | 69 | 239 | 376 | 70 | 261 | 206 | 591 | 489 | 291 | 283 | 62 | 116 | 90 | 177 | 493 | 127 | 560 | 50 | 155 | 968 | 281 | 156 | 329 | 369 | 195 | 301 | 190 | 506 | 67 | 195 | 202 | 46 | 49 | 73 | 412 | 467 | 42 | 39 | 26 | 176 | 10 | 193 | 308 | 114 | 174 | 20 | 39 | 232 |