GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_035968265.1	NZ_JAVYIM010000001	NZ_JAVYIM010000001.1	MAG: Nitrosarchaeum sp. isolate BO1-MAG1 k141_11603; whole genome shotgun sequence.	4114	3739	1832	2157	11842	0.35	0.32	0.15	0.18	0.34	0.9166	0.1292	0.8791	1.9191	4	5	9	4313	3159	1573	2286	11331	0.36	0.28	0.16	0.21	0.36	0.8945	0.3003	0.7424	1.9087	0	3	1	4	2678	1932	928	1434	6972	0.39	0.28	0.13	0.2	0.34	0.9002	0.3668	0.6913	1.897	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	17	20	25	23	85	0.2	0.24	0.29	0.27	0.56	0.887	0.1227	0.885	1.9851	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	59	42	63	41	77	46	46	133	12	7	87	157	64	5	32	19	24	15	14	66	4	54	4	121	15	8	21	28	45	86	26	35	14	49	46	18	10	5	13	6	14	1	164	24	3	64	9	82	23	25	6	5	95	29	8	58	3	1	5	13	60	1	0	14
GCF_035968265.1	NZ_JAVYIM010000002	NZ_JAVYIM010000002.1	MAG: Nitrosarchaeum sp. isolate BO1-MAG1 k141_11641; whole genome shotgun sequence.	128111	136245	65578	64972	394906	0.32	0.35	0.17	0.16	0.33	0.9287	0.0354	0.9655	1.9151	274	205	479	134216	107640	54499	68300	364655	0.37	0.29	0.15	0.19	0.35	0.8822	0.2714	0.7698	1.9003	475	212	155	367	106171	84520	43008	53851	287550	0.37	0.29	0.15	0.19	0.34	0.8818	0.2828	0.7609	1.8973	322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	80	71	67	94	312	0.26	0.23	0.21	0.3	0	0.52	0.9107	0.2273	0.8001	1.9875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10	10	20	295	335	444	476	1550	0.19	0.21	0.29	0.31	0.6	0.8662	0.2345	0.8084	1.9432	1	0	1	30	26	32	32	120	0.25	0.22	0.27	0.27	0	0.53	0.9153	0.0714	0.9333	1.9951	2609	1424	2494	2077	3647	1220	1528	5033	397	850	3561	5048	2413	214	1134	1273	2166	584	779	3401	376	2161	380	4340	538	531	1411	1388	2141	3163	1447	1793	571	2382	2437	1004	439	172	841	471	421	101	6816	686	270	2548	363	2105	774	1337	233	218	2869	1175	209	2076	93	30	227	398	2311	188	85	479
GCF_035968265.1	NZ_JAVYIM010000003	NZ_JAVYIM010000003.1	MAG: Nitrosarchaeum sp. isolate BO1-MAG1 k141_13176; whole genome shotgun sequence.	186836	178901	89462	89679	544878	0.34	0.33	0.16	0.16	0.33	0.9293	0.0229	0.9776	1.9134	365	306	671	178607	136124	71716	88850	475297	0.38	0.28	0.15	0.19	0.34	0.8805	0.2825	0.7634	1.8931	307	282	236	518	132307	99480	52485	65090	349362	0.38	0.28	0.15	0.19	0.33	0.8799	0.2884	0.7595	1.8909	142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	99	46	62	72	279	0.35	0.16	0.22	0.26	0	0.48	0.9048	0.4401	0.6629	1.9457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	0	7	102	120	142	169	533	0.19	0.23	0.27	0.31	0.58	0.8822	0.2645	0.7706	1.9545	0	2	2	1214	1002	951	1300	4467	0.27	0.22	0.22	0.29	0	0.51	0.9254	0.2458	0.7823	1.9879	3001	1733	3020	2266	4343	1788	1546	5719	477	1023	4214	6264	3117	365	1440	1679	2315	857	927	4158	502	1984	426	5063	772	669	1702	1693	2590	3654	1885	2005	734	3114	3174	1537	562	243	1145	576	650	131	8725	851	352	2717	570	2577	899	1615	340	348	3608	1254	260	2352	131	36	287	465	3069	295	92	548
GCF_035968265.1	NZ_JAVYIM010000004	NZ_JAVYIM010000004.1	MAG: Nitrosarchaeum sp. isolate BO1-MAG1 k141_15069; whole genome shotgun sequence.	61236	66978	32676	31346	192236	0.32	0.35	0.17	0.16	0.33	0.9233	0.0656	0.9368	1.9169	118	112	230	65806	50990	26323	33427	176546	0.37	0.29	0.15	0.19	0.34	0.8821	0.2734	0.7686	1.8999	249	94	80	174	48282	37215	19475	24472	129444	0.38	0.28	0.15	0.19	0.34	0.8817	0.2758	0.7672	1.8997	141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	4	52	61	93	104	310	0.17	0.18	0.3	0.34	0.65	0.8368	0.2772	0.7698	1.9106	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1153	646	1166	958	1691	599	651	2203	167	379	1558	2360	1123	100	582	541	927	255	331	1476	146	877	196	1973	282	217	621	650	872	1444	654	813	258	1043	1154	498	197	83	381	219	174	58	3117	346	102	1100	172	972	333	584	100	97	1263	522	82	953	37	14	81	180	1066	93	44	214
GCF_035968265.1	NZ_JAVYIM010000005	NZ_JAVYIM010000005.1	MAG: Nitrosarchaeum sp. isolate BO1-MAG1 k141_15592; whole genome shotgun sequence.	9603	11116	5462	4764	30945	0.31	0.36	0.18	0.15	0.33	0.9108	0.1413	0.868	1.9117	20	26	46	10065	7745	4078	5106	26994	0.36	0.28	0.16	0.2	0.35	0.8803	0.2648	0.7746	1.9036	40	16	16	32	8027	6212	3305	4071	21615	0.37	0.29	0.15	0.19	0.34	0.8822	0.2564	0.7817	1.9024	40	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	4	65	73	78	92	308	0.24	0.22	0.24	0.29	0.53	0.8896	0.4446	0.6516	1.9432	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	175	82	196	165	238	98	120	348	24	85	276	372	194	26	81	115	157	35	77	228	22	167	29	374	46	40	99	79	175	222	104	136	46	166	205	127	37	8	67	28	27	2	468	55	26	173	31	193	56	74	17	16	218	89	17	166	6	1	16	27	204	23	3	28
GCF_035968265.1	NZ_JAVYIM010000006	NZ_JAVYIM010000006.1	MAG: Nitrosarchaeum sp. isolate BO1-MAG1 k141_2982; whole genome shotgun sequence.	83223	82447	38479	38694	242843	0.34	0.34	0.16	0.16	0.32	0.9252	0.0075	0.9926	1.9019	168	138	306	84103	65713	31721	40013	221550	0.38	0.29	0.14	0.18	0.33	0.8789	0.2799	0.7639	1.8835	264	124	115	239	63038	49136	23712	29774	165660	0.38	0.29	0.14	0.18	0.32	0.8776	0.2832	0.7614	1.8811	135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	1	4	55	70	78	94	297	0.17	0.23	0.25	0.35	0.6	0.8695	0.3764	0.7111	1.9112	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1367	912	1373	1184	1782	721	894	3237	201	457	2191	3055	1558	126	698	695	1221	311	451	1989	214	1117	224	2488	341	263	753	680	1239	1775	836	1034	315	1479	1441	510	220	97	428	213	219	42	4151	331	108	1408	147	1336	381	780	147	126	1803	654	150	1085	72	21	100	245	1416	119	48	241
GCF_035968265.1	NZ_JAVYIM010000007	NZ_JAVYIM010000007.1	MAG: Nitrosarchaeum sp. isolate BO1-MAG1 k141_5916; whole genome shotgun sequence.	12463	12143	5452	5931	35989	0.35	0.34	0.15	0.16	0.32	0.9136	0.0551	0.9468	1.8998	16	21	37	12923	10618	4988	6063	34592	0.37	0.3	0.15	0.18	0.33	0.8816	0.2605	0.7791	1.8837	45	11	15	26	8276	6516	2997	3823	21612	0.38	0.3	0.14	0.18	0.32	0.8778	0.2846	0.7603	1.8776	22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	0	2	32	32	42	44	150	0.21	0.21	0.28	0.29	0.57	0.8987	0.0227	0.9783	1.9839	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	141	127	162	158	206	97	123	436	23	43	312	401	189	14	82	71	189	39	37	266	19	153	25	362	33	45	91	84	161	232	88	159	38	220	176	64	18	19	50	32	24	3	582	39	25	159	31	170	76	114	12	19	253	91	15	133	8	2	14	25	166	10	7	41
GCF_035968265.1	NZ_JAVYIM010000008	NZ_JAVYIM010000008.1	MAG: Nitrosarchaeum sp. isolate BO1-MAG1 k141_7161; whole genome shotgun sequence.	24055	23873	11617	12182	71727	0.34	0.33	0.16	0.17	0.33	0.9251	0.0275	0.973	1.9166	47	28	75	24576	20456	10343	12565	67940	0.37	0.3	0.15	0.19	0.33	0.8843	0.2376	0.7964	1.8944	86	35	21	56	18597	15365	7823	9539	51324	0.38	0.3	0.15	0.18	0.33	0.8831	0.2557	0.7825	1.8898	70	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	30	31	42	47	150	0.2	0.17	0.26	0.37	0.63	0.8264	0.5783	0.5966	1.8328	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	355	231	430	390	581	195	303	892	85	169	716	761	466	38	220	271	452	103	137	609	62	486	62	936	87	122	217	219	351	541	225	317	98	433	478	241	66	18	130	77	75	14	1165	124	49	450	62	302	162	186	52	31	523	230	36	379	12	9	46	74	443	24	19	71