GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_014078535.1	NZ_MU078702	NZ_MU078702.1	Nitrosopumilus sp. b2 3; whole genome shotgun sequence.	303789	304420	152877	155261	157	916504	0.33	0.33	0.17	0.17	0.34	0.928	0.0088	0.9913	1.9211	576	529	1105	306586	247898	126811	160820	842115	0.36	0.29	0.15	0.2	0.35	0.8811	0.2673	0.7732	1.9047	962	439	415	854	237910	191296	98571	124537	652314	0.37	0.29	0.15	0.19	0.34	0.881	0.2726	0.7693	1.9033	614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	80	73	66	95	314	0.25	0.23	0.21	0.3	0	0.51	0.9164	0.2259	0.8036	1.9867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18	14	32	470	538	685	759	2452	0.2	0.21	0.27	0.32	0	0.59	0.8749	0.2694	0.7829	1.939	1	1	28	27	32	33	120	0.23	0.23	0.27	0.28	0	0.54	0.9153	0.0336	0.967	1.9948	5604	3729	5398	4601	8468	3480	3069	11618	851	2019	7738	11609	5822	421	2718	2915	4855	1282	2106	7818	860	4637	928	10284	1295	1174	3380	3268	4648	7178	3250	3976	1391	4341	5709	2769	1058	512	2045	1034	823	214	14299	1458	555	6256	1010	4889	1818	2981	400	326	5873	3048	643	4545	253	69	268	950	5510	412	189	791
GCF_014078535.1	NZ_MU078703	NZ_MU078703.1	Nitrosopumilus sp. b2 4; whole genome shotgun sequence.	57610	60889	31405	31686	162	181752	0.32	0.34	0.17	0.17	0.35	0.9299	0.0321	0.9686	1.931	135	101	236	58335	45116	25800	31438	160689	0.37	0.28	0.16	0.2	0.36	0.8837	0.2682	0.7731	1.9142	219	116	79	195	47881	36818	20880	25560	131139	0.37	0.28	0.16	0.19	0.35	0.8822	0.2766	0.7668	1.91	159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	3	5	83	89	115	114	401	0.2	0.22	0.29	0.29	0	0.58	0.828	0.2764	0.7781	1.933	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1119	969	1080	930	1853	782	557	2218	196	353	1372	2187	1150	96	498	698	924	300	408	1426	254	845	250	1913	305	255	735	717	867	1431	714	822	337	806	1187	670	246	124	435	239	229	62	2929	405	132	1225	171	965	354	531	88	77	967	544	137	884	47	13	69	202	1113	107	41	153
GCF_014078535.1	NZ_MU078704	NZ_MU078704.1	Nitrosopumilus sp. b2 8; whole genome shotgun sequence.	57253	50821	26766	27823	36	162699	0.35	0.31	0.16	0.17	0.34	0.9235	0.0789	0.9248	1.9186	101	109	210	53539	41393	21676	27923	144531	0.37	0.28	0.15	0.19	0.34	0.8781	0.2964	0.7525	1.8985	78	79	90	169	41420	32239	17006	21946	112611	0.37	0.28	0.15	0.19	0.34	0.8775	0.2931	0.755	1.9001	66	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	101	47	61	70	279	0.36	0.17	0.22	0.25	0	0.47	0.8987	0.4336	0.6684	1.9436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	29	34	43	53	159	0.18	0.22	0.27	0.33	0	0.6	0.8898	0.2425	0.7879	1.954	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1002	675	937	816	1453	615	526	1976	156	381	1228	2049	953	75	471	501	791	260	360	1265	163	780	166	1657	214	193	555	638	778	1228	558	665	247	753	993	496	171	121	323	210	164	43	2676	288	111	1025	219	826	307	455	59	67	1004	475	118	792	43	11	58	155	960	93	33	156
GCF_014078535.1	NZ_MU078705	NZ_MU078705.1	Nitrosopumilus sp. b2 10; whole genome shotgun sequence.	114748	119143	59514	60216	0	353621	0.32	0.34	0.17	0.17	0.34	0.9293	0.0247	0.9757	1.9233	271	210	481	116273	88689	48143	60558	313663	0.38	0.28	0.15	0.19	0.34	0.8775	0.2977	0.7528	1.8963	280	225	169	394	92274	69579	37775	47773	247401	0.38	0.28	0.15	0.19	0.34	0.8768	0.307	0.7459	1.8967	169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	1	3	39	46	68	73	226	0.17	0.22	0.3	0.31	0	0.61	0.8772	0.2012	0.8241	1.9441	2	2	1189	1001	953	1318	4461	0.26	0.22	0.22	0.3	0	0.51	0.9257	0.2433	0.7849	1.9874	2239	1551	2020	1594	3366	1566	1024	4219	368	718	2628	4421	2086	176	1025	1171	1646	584	734	2791	391	1444	342	3641	565	495	1267	1343	1710	2607	1281	1502	560	1584	2177	1035	454	213	822	463	376	104	6154	639	255	2167	452	1879	638	1108	151	169	2138	1103	231	1601	111	40	96	383	2211	197	86	355
GCF_014078535.1	NZ_MU078706	NZ_MU078706.1	Nitrosopumilus sp. b2 27; whole genome shotgun sequence.	954	979	516	539	0	2988	0.32	0.33	0.17	0.18	0.35	0.9042	0.0347	0.9659	1.9366	1	3	4	839	742	384	447	2412	0.36	0.3	0.16	0.18	0.34	0.8725	0.2243	0.8073	1.9025	4	1	3	4	839	742	384	447	2412	0.36	0.3	0.16	0.18	0.34	0.8725	0.2243	0.8073	1.9025	4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	25	11	18	13	36	17	14	51	2	10	27	35	26	0	13	7	23	3	13	33	2	21	7	32	4	4	9	21	19	23	15	13	3	13	23	7	7	4	8	7	1	0	57	9	2	20	4	6	3	8	1	0	14	13	2	12	0	0	2	0	26	3	1	1