GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_014078525.1	NZ_MU078693	NZ_MU078693.1	Nitrosopumilus sp. b3 3; whole genome shotgun sequence.	106510	109038	52780	52330	143	320801	0.33	0.34	0.16	0.16	0	0.33	0.9267	0.016	0.9841	1.9124	157	219	376	108985	89342	44047	55149	297523	0.37	0.3	0.15	0.19	0.33	0.8802	0.2612	0.7783	1.8951	316	122	169	291	84170	68629	33678	42204	228681	0.37	0.3	0.14	0.18	0.33	0.8791	0.2651	0.7751	1.8919	213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	3	6	93	102	116	136	447	0.2	0.21	0.25	0.35	0	0.6	0.8526	0.4417	0.6765	1.8861	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1932	1048	1898	1764	2803	1027	1189	4467	343	677	3035	4022	2258	119	1011	860	1707	451	731	2763	239	1678	353	3814	433	399	1076	996	1597	2568	1048	1447	436	1525	1959	721	272	170	588	338	271	60	5366	474	161	2178	324	1589	549	992	143	124	2372	1059	207	1565	74	22	107	291	2034	149	68	286
GCF_014078525.1	NZ_MU078694	NZ_MU078694.1	Nitrosopumilus sp. b3 4; whole genome shotgun sequence.	174067	173089	85627	87515	15	520313	0.33	0.33	0.16	0.17	0	0.33	0.9294	0.0137	0.9864	1.9177	363	309	672	170935	132709	69134	87538	460316	0.38	0.29	0.15	0.19	0.34	0.8784	0.2877	0.7598	1.8952	325	292	250	542	130276	100144	51865	66321	348606	0.38	0.28	0.15	0.19	0.34	0.8771	0.2964	0.7536	1.8938	205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	97	47	63	73	280	0.35	0.17	0.23	0.26	0	0.49	0.9012	0.4208	0.6738	1.9518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	4	57	61	87	102	307	0.19	0.2	0.28	0.33	0	0.62	0.8926	0.1961	0.8245	1.9443	2	2	1208	1001	945	1307	4461	0.27	0.22	0.22	0.29	0	0.51	0.9258	0.2509	0.7785	1.9868	2981	1976	2767	2289	4221	2167	1518	6014	659	1039	4375	6469	3226	266	1559	1448	2359	896	1145	3944	567	2036	491	5389	827	637	1675	1914	2493	3405	1845	1999	737	2458	3065	1387	545	363	1067	586	489	127	8738	781	370	2898	757	2423	920	1554	281	229	3299	1425	372	2100	128	53	198	484	2873	287	127	485
GCF_014078525.1	NZ_MU078695	NZ_MU078695.1	Nitrosopumilus sp. b3 6; whole genome shotgun sequence.	54073	49225	26161	27716	0	157175	0.34	0.31	0.17	0.18	0	0.34	0.9252	0.0758	0.9271	1.9262	108	79	187	53626	40237	22203	27882	143948	0.37	0.28	0.15	0.2	0.35	0.8832	0.2903	0.7565	1.9046	166	90	63	153	45425	33944	18770	23463	121602	0.38	0.28	0.15	0.19	0.35	0.8829	0.294	0.7535	1.9034	86	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	0	2	28	41	39	45	153	0.18	0.26	0.27	0.29	0	0.56	0.8628	0.3143	0.7319	1.9689	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1029	830	912	767	1441	778	451	2032	239	336	1432	2365	1173	137	481	679	742	312	476	1339	294	613	199	1821	394	237	585	717	837	1241	678	697	302	880	1065	673	220	114	397	194	191	40	2785	293	152	941	227	878	270	475	118	72	1030	490	159	710	47	23	77	154	1012	62	44	175
GCF_014078525.1	NZ_MU078696	NZ_MU078696.1	Nitrosopumilus sp. b3 7; whole genome shotgun sequence.	172520	184012	90682	88798	18	536030	0.32	0.34	0.17	0.17	0	0.33	0.9259	0.0427	0.9584	1.9193	345	307	652	180948	144394	73551	94146	493039	0.37	0.29	0.15	0.2	0.35	0.8812	0.2805	0.7639	1.9022	479	270	245	515	145273	114616	58481	75158	393528	0.37	0.29	0.15	0.19	0.34	0.8805	0.2906	0.7562	1.8992	338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	81	71	67	95	314	0.26	0.23	0.21	0.3	0	0.52	0.913	0.2386	0.7909	1.9866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11	12	23	345	391	507	545	1788	0.19	0.21	0.29	0.31	0	0.59	0.8688	0.2097	0.8211	1.9513	1	1	30	27	31	32	120	0.25	0.23	0.26	0.27	0	0.53	0.9153	0.0685	0.9344	1.9972	3410	2146	3263	2710	5106	2275	1835	7343	623	1094	4827	7024	3615	279	1566	1629	2734	875	1260	4575	531	2735	600	6129	798	725	1948	1944	2768	4322	2055	2426	813	2658	3268	1483	636	355	1169	638	476	113	9392	853	338	3552	777	2967	1057	1691	280	219	3666	1604	383	2695	125	43	224	507	3128	271	119	506
GCF_014078525.1	NZ_MU078697	NZ_MU078697.1	Nitrosopumilus sp. b3 10; whole genome shotgun sequence.	42165	40554	21352	21380	0	125451	0.34	0.32	0.17	0.17	0	0.34	0.9256	0.0201	0.9802	1.9252	59	95	154	41463	32045	17252	21851	112611	0.37	0.28	0.15	0.19	0.35	0.8794	0.2717	0.7703	1.9087	191	47	79	126	32358	24842	13565	17063	87828	0.37	0.28	0.15	0.19	0.35	0.8814	0.2745	0.768	1.9092	118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	30	34	48	50	162	0.19	0.2	0.29	0.32	0	0.61	0.8647	0.2343	0.7974	1.9455	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	725	586	706	588	1101	521	385	1477	168	274	986	1563	819	68	354	422	580	192	305	879	136	597	152	1406	214	164	442	413	658	960	469	549	222	590	698	383	163	84	290	157	104	31	2044	196	95	777	148	692	265	418	52	50	707	405	100	581	31	11	46	146	709	63	32	127
GCF_014078525.1	NZ_MU078698	NZ_MU078698.1	Nitrosopumilus sp. b3 20; whole genome shotgun sequence.	29588	30148	14214	13922	3	87875	0.34	0.34	0.16	0.16	0	0.32	0.9203	0.0198	0.9804	1.9045	57	53	110	27976	22683	10785	14001	75445	0.37	0.3	0.14	0.19	0.33	0.8763	0.2829	0.7633	1.8903	145	46	41	87	22687	18349	8728	11328	61092	0.38	0.3	0.14	0.19	0.33	0.8768	0.2879	0.7595	1.8878	82	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	28	33	42	45	148	0.19	0.22	0.28	0.3	0	0.59	0.8679	0.1195	0.8952	1.9712	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	577	293	481	425	650	301	311	1148	109	212	768	1163	522	44	266	241	473	128	187	720	80	408	61	981	89	107	270	352	450	629	291	399	94	462	501	179	93	61	144	91	71	11	1530	98	51	547	116	446	163	313	44	23	629	318	68	346	26	7	31	90	529	45	16	85
GCF_014078525.1	NZ_MU078699	NZ_MU078699.1	Nitrosopumilus sp. b3 24; whole genome shotgun sequence.	12070	10448	5428	6101	0	34047	0.35	0.31	0.16	0.18	0	0.34	0.9237	0.1304	0.8777	1.9202	27	18	45	10369	8220	4350	5514	28453	0.35	0.28	0.16	0.2	0.36	0.8838	0.2477	0.7868	1.9152	40	18	14	32	8267	6512	3486	4436	22701	0.36	0.29	0.15	0.2	0.35	0.885	0.2568	0.7803	1.9124	40	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	4	67	73	78	90	308	0.25	0.22	0.24	0.29	0	0.53	0.8923	0.4267	0.6659	1.9447	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	205	103	192	161	268	116	111	376	42	88	268	403	198	22	88	120	162	38	91	220	32	169	34	433	51	40	100	97	169	254	117	132	47	128	182	112	32	20	91	44	23	5	482	48	33	195	47	187	63	98	16	10	216	102	19	157	8	1	11	27	210	20	4	29
GCF_014078525.1	NZ_MU078700	NZ_MU078700.1	Nitrosopumilus sp. b3 52; whole genome shotgun sequence.	1540	1745	954	928	227	5394	0.29	0.32	0.18	0.17	0.04	0.35	0.908	0.0762	0.9276	1.9219	0	2	2	1546	1370	823	839	4578	0.33	0.31	0.17	0.19	0.36	0.8896	0.1722	0.844	1.9325	0	0	1	1	451	498	209	276	1434	0.31	0.35	0.15	0.19	0.34	0.8943	0.1877	0.8314	1.9173	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	12	19	7	5	10	23	0	2	41	23	16	3	12	12	9	1	5	31	1	20	1	50	0	7	5	7	4	16	5	8	3	13	15	5	0	0	4	3	1	0	3	8	0	13	2	0	4	4	3	2	13	8	0	11	0	0	0	1	3	0	0	0
GCF_014078525.1	NZ_MU078701	NZ_MU078701.1	Nitrosopumilus sp. b3 137; whole genome shotgun sequence.	592	680	363	352	0	1987	0.3	0.34	0.18	0.18	0	0.36	0.8994	0.0846	0.9201	1.9403	0	2	2	480	402	257	283	1422	0.34	0.28	0.18	0.2	0.38	0.8924	0.1395	0.8713	1.9511	0	0	1	1	229	186	141	146	702	0.33	0.26	0.2	0.21	0.41	0.8937	0.121	0.889	1.9712	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	3	10	10	21	2	8	12	2	1	5	7	12	1	4	2	6	0	1	4	0	4	1	4	5	3	4	4	4	15	6	2	3	3	7	4	1	0	3	2	2	0	5	1	0	7	1	4	2	3	0	0	4	1	0	7	0	0	0	1	4	1	0	1