Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_020386975.1 | NZ_JABFNK010000002 | NZ_JABFNK010000002.1 | Thermococcus bergensis strain T7324 unitig_56; whole genome shotgun sequence. | 24393 | 23852 | 19522 | 17922 | 0 | 85689 | 0.28 | 0.28 | 0.23 | 0.21 | 0 | 0.44 | 0.9421 | 0.0539 | 0.9479 | 1.9879 | 41 | 56 | 97 | 23287 | 18260 | 14187 | 18921 | 0 | 74655 | 0.31 | 0.24 | 0.19 | 0.26 | 0 | 0.45 | 0.8996 | 0.3248 | 0.731 | 1.9568 | 102 | 34 | 52 | 86 | 21509 | 17053 | 13101 | 17493 | 0 | 69156 | 0.32 | 0.24 | 0.19 | 0.25 | 0 | 0.44 | 0.9008 | 0.3386 | 0.7207 | 1.9608 | 68 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 3 | 5 | 61 | 62 | 141 | 142 | 0 | 406 | 0.15 | 0.15 | 0.35 | 0.35 | 0 | 0.7 | 0.8683 | 0.1192 | 0.8901 | 1.8789 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 497 | 891 | 391 | 260 | 627 | 879 | 465 | 595 | 146 | 292 | 241 | 1025 | 232 | 143 | 181 | 489 | 178 | 376 | 460 | 636 | 423 | 336 | 555 | 543 | 246 | 255 | 221 | 309 | 386 | 656 | 388 | 627 | 279 | 853 | 366 | 444 | 236 | 256 | 512 | 361 | 361 | 56 | 996 | 305 | 67 | 775 | 416 | 530 | 57 | 150 | 67 | 259 | 292 | 189 | 462 | 291 | 18 | 41 | 159 | 28 | 159 | 28 | 49 | 40 |
GCF_020386975.1 | NZ_JABFNK010000001 | NZ_JABFNK010000001.1 | Thermococcus bergensis strain T7324 unitig_58; whole genome shotgun sequence. | 83086 | 80080 | 62995 | 64637 | 0 | 290798 | 0.29 | 0.28 | 0.22 | 0.22 | 0 | 0.44 | 0.945 | 0.0313 | 0.9692 | 1.989 | 168 | 177 | 345 | 81632 | 61386 | 49451 | 65413 | 0 | 257882 | 0.31 | 0.24 | 0.19 | 0.26 | 0 | 0.44 | 0.8994 | 0.3229 | 0.7316 | 1.9615 | 791 | 154 | 167 | 321 | 76705 | 57359 | 46172 | 61333 | 0 | 241569 | 0.32 | 0.24 | 0.19 | 0.25 | 0 | 0.44 | 0.8995 | 0.3422 | 0.7178 | 1.9606 | 708 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 4 | 1 | 5 | 59 | 59 | 133 | 136 | 0 | 387 | 0.15 | 0.15 | 0.35 | 0.35 | 0 | 0.7 | 0.8478 | 0.1782 | 0.8487 | 1.8703 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 1610 | 3549 | 1180 | 959 | 1854 | 3619 | 1415 | 1953 | 544 | 920 | 937 | 3901 | 744 | 602 | 627 | 1875 | 551 | 1307 | 1605 | 2001 | 1411 | 1113 | 2076 | 1778 | 936 | 876 | 816 | 1011 | 1315 | 2134 | 1515 | 2134 | 1031 | 2667 | 1107 | 1693 | 842 | 856 | 1756 | 1379 | 1240 | 227 | 3521 | 1024 | 273 | 2541 | 1227 | 1877 | 286 | 469 | 226 | 733 | 1012 | 592 | 1808 | 1095 | 102 | 207 | 619 | 165 | 602 | 89 | 218 | 161 |
GCF_020386975.1 | NZ_JABFNK010000005 | NZ_JABFNK010000005.1 | Thermococcus bergensis strain T7324 unitig_62; whole genome shotgun sequence. | 344191 | 351578 | 272484 | 278763 | 0 | 1247016 | 0.28 | 0.28 | 0.22 | 0.22 | 0 | 0.44 | 0.9494 | 0.022 | 0.9782 | 1.9902 | 712 | 662 | 1374 | 347015 | 270666 | 217220 | 285845 | 0 | 1120746 | 0.31 | 0.24 | 0.19 | 0.26 | 0 | 0.45 | 0.9017 | 0.3016 | 0.7472 | 1.9636 | 2358 | 668 | 608 | 1276 | 327022 | 254235 | 204022 | 268945 | 0 | 1054224 | 0.31 | 0.24 | 0.19 | 0.25 | 0 | 0.44 | 0.9018 | 0.3186 | 0.735 | 1.9635 | 1891 | 16 | 0 | 0 | 0 | 0 | 16 | 1 | 0 | 0 | 0 | 0 | 0 | NA | 0.2105 | 0 | 0 | 0 | 1 | 1 | 2 | 119 | 83 | 188 | 247 | 0 | 637 | 0.19 | 0.13 | 0.3 | 0.39 | 0 | 0.68 | 0.8743 | 0.3105 | 0.7321 | 1.879 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 10 | 12 | 22 | 264 | 265 | 608 | 622 | 0 | 1759 | 0.15 | 0.15 | 0.35 | 0.35 | 0 | 0.7 | 0.8614 | 0.1678 | 0.856 | 1.8703 | 0 | 0 | 2 | 2 | 40 | 30 | 84 | 90 | 0 | 244 | 0.16 | 0.12 | 0.34 | 0.37 | 0 | 0.71 | 0.8617 | 0.1773 | 0.8417 | 1.8598 | 0 | 7745 | 14398 | 5259 | 3816 | 8382 | 15510 | 6428 | 8691 | 2361 | 4324 | 4149 | 16078 | 3133 | 2701 | 2746 | 7711 | 2670 | 5818 | 7299 | 8977 | 5828 | 4789 | 8774 | 7766 | 4169 | 4126 | 3370 | 4535 | 5976 | 9909 | 6304 | 9215 | 5001 | 12549 | 4873 | 7549 | 3907 | 3875 | 7729 | 5975 | 5105 | 1080 | 13826 | 4914 | 1145 | 11177 | 5512 | 7907 | 1238 | 2088 | 1131 | 3321 | 4259 | 2804 | 7448 | 4953 | 317 | 784 | 3037 | 590 | 2544 | 325 | 895 | 563 |
GCF_020386975.1 | NZ_JABFNK010000004 | NZ_JABFNK010000004.1 | Thermococcus bergensis strain T7324 unitig_63; whole genome shotgun sequence. | 26835 | 25431 | 18405 | 19125 | 0 | 89796 | 0.3 | 0.28 | 0.2 | 0.21 | 0 | 0.42 | 0.9384 | 0.046 | 0.955 | 1.9801 | 66 | 39 | 105 | 23818 | 20568 | 14089 | 18615 | 0 | 77090 | 0.31 | 0.26 | 0.18 | 0.24 | 0 | 0.43 | 0.8996 | 0.2827 | 0.7636 | 1.9566 | 185 | 61 | 37 | 98 | 22493 | 19427 | 13194 | 17432 | 0 | 72546 | 0.31 | 0.26 | 0.18 | 0.24 | 0 | 0.42 | 0.8992 | 0.3192 | 0.7376 | 1.9545 | 157 | 2 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | NA | 0.1429 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 0 | 2 | 23 | 21 | 57 | 55 | 0 | 156 | 0.15 | 0.13 | 0.37 | 0.35 | 0 | 0.72 | 0.8549 | 0.1043 | 0.9034 | 1.8533 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 509 | 875 | 364 | 314 | 490 | 823 | 411 | 648 | 182 | 315 | 398 | 985 | 259 | 166 | 292 | 550 | 242 | 406 | 510 | 801 | 397 | 347 | 512 | 570 | 222 | 248 | 292 | 462 | 498 | 614 | 490 | 591 | 289 | 822 | 332 | 380 | 226 | 239 | 515 | 359 | 303 | 66 | 1065 | 282 | 66 | 830 | 387 | 520 | 96 | 179 | 89 | 181 | 432 | 193 | 525 | 312 | 36 | 60 | 177 | 44 | 197 | 30 | 85 | 76 |
GCF_020386975.1 | NZ_JABFNK010000003 | NZ_JABFNK010000003.1 | Thermococcus bergensis strain T7324 unitig_66; whole genome shotgun sequence. | 102768 | 99442 | 83814 | 78509 | 0 | 364533 | 0.28 | 0.27 | 0.23 | 0.22 | 0 | 0.45 | 0.9486 | 0.0491 | 0.9522 | 1.9909 | 178 | 222 | 400 | 102634 | 79086 | 64437 | 84871 | 0 | 331028 | 0.31 | 0.24 | 0.2 | 0.26 | 0 | 0.45 | 0.9008 | 0.3131 | 0.7386 | 1.9591 | 781 | 169 | 194 | 363 | 96909 | 74673 | 60153 | 79068 | 0 | 310803 | 0.31 | 0.24 | 0.19 | 0.25 | 0 | 0.44 | 0.9022 | 0.3274 | 0.728 | 1.9616 | 730 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 12 | 14 | 154 | 174 | 381 | 402 | 0 | 1111 | 0.14 | 0.16 | 0.34 | 0.36 | 0 | 0.7 | 0.8575 | 0.1575 | 0.8612 | 1.8677 | 0 | 0 | 2 | 2 | 934 | 676 | 1267 | 1638 | 0 | 4515 | 0.2 | 0.15 | 0.28 | 0.36 | 0 | 0.65 | 0.9019 | 0.2804 | 0.7546 | 1.9234 | 0 | 2336 | 4220 | 1569 | 1148 | 2663 | 4401 | 1972 | 2495 | 628 | 1202 | 1269 | 4432 | 961 | 815 | 810 | 2307 | 697 | 1674 | 2119 | 2602 | 1671 | 1542 | 2492 | 2418 | 1236 | 1185 | 987 | 1314 | 1698 | 3090 | 1881 | 2674 | 1440 | 3726 | 1562 | 2198 | 1155 | 1087 | 2253 | 1779 | 1534 | 294 | 3980 | 1447 | 318 | 3487 | 1462 | 2478 | 352 | 612 | 304 | 983 | 1293 | 799 | 2201 | 1648 | 86 | 191 | 891 | 163 | 860 | 70 | 278 | 154 |