GBRAP

Genome-Based Retrieval and Analysis Parser


ARCHAEA : Thermococcus_sp._9N3
Assembly Assembly Locus_ID Locus_ID Version Version Definition Sequence description bp_chromo_A Total number of 'A' nucleotides in the whole sequence bp_chromo_T Total number of 'T' nucleotides in the whole sequence bp_chromo_C Total number of 'C' nucleotides in the whole sequence bp_chromo_G Total number of 'G' nucleotides in the whole sequence bp_chromo_N Total number of 'N' nucleotides in the whole sequence bp_chromo_tot Total number of nucleotides in the whole sequence fr_chromo_A Frequency of 'A' nucleotides in the whole sequence fr_chromo_T Frequency of 'T' nucleotides in the whole sequence fr_chromo_C Frequency of 'C' nucleotides in the whole sequence fr_chromo_G Frequency of 'G' nucleotides in the whole sequence fr_chromo_N Frequency of 'N' nucleotides in the whole sequence GC_chromo Percentage of ā€˜G’ + ā€˜C’ nucleotides in the whole sequence topo_entropy_chromo Topological entropy of the whole sequence chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee shannon_chromo Shannon entropy of the whole sequence n_gene_pos Number of genes in the positive strand n_gene_neg Number of genes in the negative strand n_gene_tot Total number of genes in the chromosome bp_gene_A Number of 'A' bases in total genes bp_gene_T Number of 'T' bases in total genes bp_gene_C Number of 'C' bases in total genes bp_gene_G Number of 'G' bases in total genes bp_gene_N Number of 'N' bases in total genes bp_gene_tot Total number of bases in total genes fr_gene_A Frequency of 'A' bases among total gene bases fr_gene_T Frequency of 'T' bases among total gene bases fr_gene_C Frequency of 'C' bases among total gene bases fr_gene_G Frequency of 'G' bases among total gene bases fr_gene_N Frequency of 'N' bases among total gene bases GC_gene Percentage of 'G' and 'C' bases in total genes topo_entropy_gene Topological entropy calculated from total gene sequences chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes shannon_gene Shannon entropy score for total genes bp_gene_overlap_tot Number of bases overlapping between genes on two strands n_cds_pos Number of CDS in the positive strand n_cds_neg Number of CDS in the negative strand n_cds_tot Total number of CDS in the chromosome bp_cds_A Number of 'A' bases in total CDS (coding sequences) bp_cds_T Number of 'T' bases in total CDS bp_cds_C Number of 'C' bases in total CDS bp_cds_G Number of 'G' bases in total CDS bp_cds_N Number of 'N' bases in total CDS bp_cds_tot Total bases in total CDS fr_cds_A Frequency of 'A' bases among total CDS bases fr_cds_T Frequency of 'T' bases among total CDS bases fr_cds_C Frequency of 'C' bases among total CDS bases fr_cds_G Frequency of 'G' bases among total CDS bases fr_cds_N Frequency of 'N' bases among total CDS bases GC_cds Percentage of 'G' and 'C' bases in total CDS topo_entropy_cds Topological entropy calculated from total CDS sequences chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS shannon_cds Shannon entropy score for total CDS bp_cds_overlap_tot Number of bases overlapping between CDS on two strands bp_cds_intron_A Number of 'A' bases in total introns between CDS bp_cds_intron_T Number of 'T' bases in total introns between CDS bp_cds_intron_C Number of 'C' bases in total introns between CDS bp_cds_intron_G Number of 'G' bases in total introns between CDS bp_cds_intron_N Number of 'N' bases in total introns between CDS bp_cds_intron_tot Total bases in total introns between CDS fr_cds_intron_A Frequency of 'A' bases in total introns between CDS fr_cds_intron_T Frequency of 'T' bases in total introns between CDS fr_cds_intron_C Frequency of 'C' bases in total introns between CDS fr_cds_intron_G Frequency of 'G' bases in total introns between CDS fr_cds_intron_N Frequency of 'N' bases in total introns between CDS GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS shannon_cds_intron Shannon entropy score for total introns between CDS bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands n_ncRNA_pos Number of ncRNA in the positive strand n_ncRNA_neg Number of ncRNA in the negative strand n_ncRNA_tot Total number of ncRNA in the chromosome bp_ncRNA_A Number of 'A' bases in total ncRNA bp_ncRNA_T bp_ncRNA_T bp_ncRNA_C Number of 'C' bases in total ncRNA bp_ncRNA_G Number of 'G' bases in total ncRNA bp_ncRNA_N Number of 'N' bases in total ncRNA bp_ncRNA_tot Total bases in total ncRNA fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA shannon_ncRNA Shannon entropy score for total ncRNA bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands bp_nc_intron_A Number of 'A' bases in total introns between ncRNA bp_nc_intron_T Number of 'T' bases in total introns between ncRNA bp_nc_intron_C Number of 'C' bases in total introns between ncRNA bp_nc_intron_G Number of 'G' bases in total introns between ncRNA bp_nc_intron_N Number of 'N' bases in total introns between ncRNA bp_nc_intron_tot Total bases in total introns between ncRNA fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA shannon_nc_intron Shannon entropy score for total introns between ncRNA bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands n_tRNA_pos Number of tRNA in the positive strand n_tRNA_neg Number of tRNA in the negative strand n_tRNA_tot Total number of tRNA in the chromosome bp_tRNA_A Number of 'A' bases in total tRNA bp_tRNA_T Number of 'T' bases in total tRNA bp_tRNA_C Number of 'C' bases in total tRNA bp_tRNA_G Number of 'G' bases in total tRNA bp_tRNA_N Number of 'N' bases in total tRNA bp_tRNA_tot Total bases in total tRNA fr_tRNA_A Frequency of 'A' bases among total tRNA bases fr_tRNA_T Frequency of 'T' bases among total tRNA bases fr_tRNA_C Frequency of 'C' bases among total tRNA bases fr_tRNA_G Frequency of 'G' bases among total tRNA bases fr_tRNA_N Frequency of 'N' bases among total tRNA bases GC_tRNA Percentage of 'G' and 'C' bases in total tRNA topo_entropy_tRNA Topological entropy calculated from total tRNA sequences chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA shannon_tRNA Shannon entropy score for total tRNA bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands n_rRNA_pos Number of rRNA in the positive strand n_rRNA_neg Number of rRNA in the negative strand n_rRNA_tot Total number of rRNA in the chromosome bp_rRNA_A Number of 'A' bases in total rRNA bp_rRNA_T Number of 'T' bases in total rRNA bp_rRNA_C Number of 'C' bases in total rRNA bp_rRNA_G Number of 'G' bases in total rRNA bp_rRNA_N Number of 'N' bases in total rRNA bp_rRNA_tot Total bases in total rRNA fr_rRNA_A Frequency of 'A' bases among total rRNA bases fr_rRNA_T Frequency of 'T' bases among total rRNA bases fr_rRNA_C Frequency of 'C' bases among total rRNA bases fr_rRNA_G Frequency of 'G' bases among total rRNA bases fr_rRNA_N Frequency of 'N' bases among total rRNA bases GC_rRNA Percentage of 'G' and 'C' bases in total rRNA topo_entropy_rRNA Topological entropy calculated from total rRNA sequences chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA shannon_rRNA Shannon entropy score for total rRNA bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands ATG ATG AAG AAG GTA GTA ACT ACT GCA GCA GAG GAG GCT GCT ATT ATT TCC TCC TGG TGG AAT AAT GAA GAA TCA TCA ACG ACG AGT AGT AAC AAC TCT TCT GTG GTG TTC TTC TTT TTT CTG CTG GGT GGT CTC CTC GAT GAT CAG CAG ACC ACC CTA CTA TTG TTG TAT TAT GGA GGA ATC ATC CTT CTT GTC GTC ATA ATA ACA ACA GAC GAC CAC CAC CCC CCC TAC TAC GCC GCC AGC AGC CGC CGC AAA AAA GGC GGC TGC TGC GTT GTT GGG GGG AGA AGA TGT TGT CAT CAT TCG TCG GCG GCG TTA TTA CCT CCT AGG AGG CCA CCA TAG TAG CGG CGG CCG CCG CGT CGT CAA CAA TAA TAA TGA TGA CGA CGA
GCF_012027685.1NZ_SNUV01000009NZ_SNUV01000009.1Thermococcus sp. 9N3 NODE_10_length_515_cov_0.716495; whole genome shotgun sequence.177167799205150.340.320.150.1800.330.89870.10510.90111.9152101167162758604900.340.330.150.1800.330.90.08350.92111.91220000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA00000000000000000000000000000000000000000000000000000000000000000
GCF_012027685.1NZ_SNUV01000010NZ_SNUV01000010.1Thermococcus sp. 9N3 NODE_11_length_486_cov_0.055710; whole genome shotgun sequence.8813314811704860.180.270.30.2400.550.90120.32060.72611.9750111338811714804860.270.180.240.300.550.90120.32060.72611.9750000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA00000000000000000000000000000000000000000000000000000000000000000
GCF_012027685.1NZ_SNUV01000011NZ_SNUV01000011.1Thermococcus sp. 9N3 NODE_12_length_471_cov_0.441860; whole genome shotgun sequence.1471258511404710.310.270.180.2400.420.88860.22660.7981.9734000000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA00000000000000000000000000000000000000000000000000000000000000000
GCF_012027685.1NZ_SNUV01000012NZ_SNUV01000012.1Thermococcus sp. 9N3 NODE_13_length_460_cov_0.567568; whole genome shotgun sequence.9910912412804600.220.240.270.2800.550.90480.06390.93851.99250111039212811504380.240.210.290.2600.550.89370.10990.89581.989200111039212811504380.240.210.290.2600.550.89370.10990.89581.98920000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA0552284310232120603103311211710053344010148301400430013001202100000
GCF_012027685.1NZ_SNUV01000013NZ_SNUV01000013.1Thermococcus sp. 9N3 NODE_14_length_444_cov_0.129338; whole genome shotgun sequence.116939813704440.260.210.220.3100.530.91410.2760.75851.9828101116939813704440.260.210.220.3100.530.91410.2760.75851.98280000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA00000000000000000000000000000000000000000000000000000000000000000
GCF_012027685.1NZ_SNUV01000014NZ_SNUV01000014.1Thermococcus sp. 9N3 NODE_15_length_402_cov_0.527273; whole genome shotgun sequence.841541105404020.210.380.270.1300.410.91750.63560.51821.9029022144785210303770.370.210.150.2700.410.87530.56670.57231.909700114832253301380.350.230.180.2400.420.90990.33790.71211.9590000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA01201021100142100000110020001110212011021001102110010001200003000
GCF_012027685.1NZ_SNUV01000015NZ_SNUV01000015.1Thermococcus sp. 9N3 NODE_16_length_402_cov_0.243636; whole genome shotgun sequence.90141888304020.220.350.220.2100.430.90120.250.79071.9632000000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA00000000000000000000000000000000000000000000000000000000000000000
GCF_012027685.1NZ_SNUV01000016NZ_SNUV01000016.1Thermococcus sp. 9N3 NODE_17_length_393_cov_0.537594; whole genome shotgun sequence.958810210803930.240.220.260.2700.530.90480.06680.93541.9958011889510810203930.220.240.270.2600.530.90360.06680.93541.99580000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA00000000000000000000000000000000000000000000000000000000000000000
GCF_012027685.1NZ_SNUV01000017NZ_SNUV01000017.1Thermococcus sp. 9N3 NODE_18_length_390_cov_0.273764; whole genome shotgun sequence.92114968803900.240.290.250.2300.470.9060.15030.86181.99270117956626602630.30.210.240.2500.490.90720.20160.82411.98830000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA00000000000000000000000000000000000000000000000000000000000000000
GCF_012027685.1NZ_SNUV01000018NZ_SNUV01000018.1Thermococcus sp. 9N3 NODE_19_length_389_cov_0.412214; whole genome shotgun sequence.102839610803890.260.210.250.2800.520.90950.16150.85131.9933000000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA00000000000000000000000000000000000000000000000000000000000000000
GCF_012027685.1NZ_SNUV01000001NZ_SNUV01000001.1Thermococcus sp. 9N3 NODE_1_length_1229293_cov_36.069676; whole genome shotgun sequence.273705277834341481336273012292930.220.230.280.2700.550.94440.01520.98491.99236457031348271182217534291213327247011071760.240.20.260.300.560.89780.24440.79111.969724155826421224251687200926269961303735010263090.250.20.260.300.560.89840.24860.78791.9721830000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0111930346355841864024060.150.150.350.3600.710.85590.14550.87221.86440000000000NANANANANANANANANANA0765517970203315833344229773036526029094493109973731822551610159618952532911353310775653940188593233516070381470183717147053787157891190492231649123654810545210923114826818421045301013612541025349073175493630285480791200135511322212715215926579624542218854418
GCF_012027685.1NZ_SNUV01000019NZ_SNUV01000019.1Thermococcus sp. 9N3 NODE_20_length_255_cov_17.328125; whole genome shotgun sequence.7248548102550.280.190.210.3200.530.90990.40.66671.96851017248548102550.280.190.210.3200.530.90990.40.66671.96850000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA00000000000000000000000000000000000000000000000000000000000000000
GCF_012027685.1NZ_SNUV01000002NZ_SNUV01000002.1Thermococcus sp. 9N3 NODE_2_length_487359_cov_46.173306; whole genome shotgun sequence.11312311120513110713192404873590.230.230.270.2700.540.94520.01170.98841.99542432805231076689051211393112695504390660.240.210.260.2900.550.89960.22660.80531.9704819219252471994128341510476911673804043340.250.210.250.2900.550.90010.22950.80321.973584000000NANANANANANANANANANA0022976321226406360.150.10.330.4200.750.8540.31030.7391.79380000000NANANANANANANANANANA0381113212930029208530.150.150.350.3400.70.85710.22240.81621.86740011101327220720.140.180.380.3100.680.87470.23250.7921.89470297366748777251335844612732204141918376232726819216749039025062026455814522897172170651446199527016668288402800291324164455385170246791726211944444377249314771928396656043311892134025731511272937644608416783669631238829027994308168
GCF_012027685.1NZ_SNUV01000003NZ_SNUV01000003.1Thermococcus sp. 9N3 NODE_3_length_183354_cov_36.445775; whole genome shotgun sequence.4025940724509695140201833540.220.220.280.2800.560.93870.010.99011.9901118872053975831987438805000501656300.240.190.260.300.560.89980.23340.80011.9692325103821853601229113396614501301497990.240.20.260.300.560.90020.23450.79881.9721267000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA03033533859002430.140.140.350.3700.720.86780.05830.94381.8541030380658011571477040200.180.140.310.3700.670.88640.20190.82211.898701168264028921846634824937234636051211054252806136127113475516844381118528285043367396219425821010111111872176213361911865721774156818281000640586156819114817224956776452123818617217362772222491293922913477
GCF_012027685.1NZ_SNUV01000004NZ_SNUV01000004.1Thermococcus sp. 9N3 NODE_4_length_53609_cov_38.030870; whole genome shotgun sequence.122001158015087147420536090.230.220.280.2700.560.93340.03760.96321.990537286511386902612134142750468210.240.20.260.300.560.89680.24580.78941.968720032255710363819411016128770424500.240.20.250.300.560.8980.25250.78471.9727181000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA01122321575401550.150.140.370.3500.720.85140.11950.89171.857100111188918623206250.190.140.30.3700.670.89370.25010.7781.90560298756835413697612220311017425329792494338245238444115369141801131177239669162252328249467367515391941954564602991781814444143022616373014436446465099811772532519153117
GCF_012027685.1NZ_SNUV01000005NZ_SNUV01000005.1Thermococcus sp. 9N3 NODE_5_length_14876_cov_330.180555; whole genome shotgun sequence.41664361333930100148760.280.290.220.200.430.92720.07470.92841.98345111636992952223029580118390.330.240.190.2400.430.89490.28530.76131.960477310133093244718922543099750.330.240.190.2500.440.89510.30250.74931.959577000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA063136464448183439723486413124343153414054872743767842225862605860754276377528296257481515144692626710291627654685442224517474618
GCF_012027685.1NZ_SNUV01000006NZ_SNUV01000006.1Thermococcus sp. 9N3 NODE_6_length_12598_cov_13.891669; whole genome shotgun sequence.27852873357033700125980.220.230.280.2700.550.92750.04440.95671.99211021227752630347032820121570.230.210.280.2800.560.90890.160.85891.9793491102216223327592575097830.230.220.280.2800.550.90880.15580.86191.98233000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA0699718334113634466553235127551613436737838706316450629010194155607083772790347114611958252883813239201154953431761821254911162
GCF_012027685.1NZ_SNUV01000007NZ_SNUV01000007.1Thermococcus sp. 9N3 NODE_8_length_572_cov_128.997753; whole genome shotgun sequence.11616118011505720.20.280.310.200.520.89370.38280.67971.971801116111611518005720.280.20.20.3100.520.89750.38280.67971.97180000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA00000000000000000000000000000000000000000000000000000000000000000
GCF_012027685.1NZ_SNUV01000008NZ_SNUV01000008.1Thermococcus sp. 9N3 NODE_9_length_518_cov_0.854220; whole genome shotgun sequence.1721657610505180.330.320.150.200.350.89120.1810.84161.9268000000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000000NANANANANANANANANANA00000000000000000000000000000000000000000000000000000000000000000