GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000430485.1	NZ_KE387145	NZ_KE387145.1	Thermococcus sp. PK ThePKDRAFT_TPC.1; whole genome shotgun sequence.	59406	60749	48030	44746	1300	214231	0.28	0.28	0.22	0.21	0.01	0.43	0.9431	0.0466	0.9548	1.9843	100	129	229	59259	46493	36025	47694	189471	0.31	0.24	0.19	0.26	0.44	0.9016	0.311	0.741	1.9597	258	85	120	205	55497	43503	33551	44530	177081	0.32	0.25	0.18	0.25	0.44	0.9028	0.3182	0.7361	1.9613	222	0	0	NA	NA	NA	NA	NA	NA	NA	0	0	NA	1	0	1	69	47	90	119	325	0.21	0.14	0.28	0.37	0	0.64	0.8736	0.3284	0.7187	1.9218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	3	5	60	60	138	131	389	0.15	0.15	0.35	0.34	0	0.69	0.8703	0.1957	0.8267	1.8816	1	1	20	15	42	45	122	0.16	0.12	0.34	0.37	0	0.71	0.8617	0.1773	0.8417	1.8598	1364	2302	967	693	1516	2506	1126	1564	372	695	684	2813	492	406	454	1226	433	877	1178	1533	888	837	1397	1427	707	634	600	880	1052	1811	1043	1670	772	2175	818	1233	526	620	1206	1025	854	126	2375	744	148	1976	828	1399	154	368	164	601	754	516	1079	942	41	107	475	96	490	49	131	86
GCF_000430485.1	NZ_KE387146	NZ_KE387146.1	Thermococcus sp. PK ThePKDRAFT_TPC.2; whole genome shotgun sequence.	8630	9430	7118	7194	200	32572	0.26	0.29	0.22	0.22	0.01	0.44	0.9372	0.0496	0.9523	1.9861	17	20	37	8187	6605	5175	6946	26913	0.31	0.25	0.19	0.26	0.44	0.9012	0.3145	0.7364	1.9661	16	17	20	37	8187	6605	5175	6946	26913	0.31	0.25	0.19	0.26	0.44	0.9012	0.3145	0.7364	1.9661	16	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	202	415	124	82	192	410	164	221	63	103	81	393	83	53	53	181	54	168	169	266	148	102	229	226	90	105	85	107	151	262	156	279	110	312	112	179	90	116	202	156	132	25	347	146	47	301	152	216	34	59	28	95	108	80	177	121	5	25	71	15	53	12	20	8
GCF_000430485.1	NZ_KE387147	NZ_KE387147.1	Thermococcus sp. PK ThePKDRAFT_TPC.3; whole genome shotgun sequence.	4138	4238	3236	3142	200	14954	0.28	0.28	0.22	0.21	0.01	0.43	0.9333	0.0267	0.9737	1.9792	7	8	15	3469	2698	1992	2712	10871	0.32	0.25	0.18	0.25	0.43	0.9008	0.3198	0.732	1.9591	41	6	5	11	2272	1781	1351	1835	7239	0.32	0.25	0.18	0.25	0.43	0.9003	0.3325	0.7205	1.96	4	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	65	87	35	20	48	97	50	73	17	18	36	111	24	15	25	38	21	46	36	55	37	36	52	55	32	30	34	44	34	76	43	52	41	90	34	46	27	21	39	51	40	5	109	47	8	85	27	51	5	11	13	23	44	20	41	32	2	3	17	3	22	5	3	6
GCF_000430485.1	NZ_KE387148	NZ_KE387148.1	Thermococcus sp. PK ThePKDRAFT_TPC.4; whole genome shotgun sequence.	13785	15083	12080	11609	200	52757	0.26	0.29	0.23	0.22	0	0.45	0.9409	0.0648	0.9375	1.99	22	31	53	13467	10248	8831	11337	43883	0.3	0.24	0.2	0.26	0.47	0.9018	0.2817	0.7612	1.9639	54	20	27	47	12727	9675	8306	10686	41394	0.31	0.24	0.19	0.26	0.45	0.9034	0.3042	0.7444	1.9678	55	0	0	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	3	3	34	34	79	86	233	0.15	0.15	0.34	0.37	0	0.71	0.8718	0.1059	0.9014	1.8655	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	312	574	179	141	322	638	243	314	88	194	161	599	113	116	101	321	88	226	294	310	228	172	378	332	153	195	144	166	258	397	239	352	202	508	196	338	175	164	342	253	214	53	476	217	30	402	222	298	42	77	63	114	133	96	304	188	11	32	128	23	86	13	31	18
GCF_000430485.1	NZ_KE387149	NZ_KE387149.1	Thermococcus sp. PK ThePKDRAFT_TPC.5; whole genome shotgun sequence.	311161	309666	246422	247810	6500	1121559	0.28	0.28	0.22	0.22	0.01	0.44	0.9497	0.0052	0.9948	1.9875	610	587	1197	301392	232893	189295	247305	970885	0.31	0.24	0.19	0.26	0.45	0.9009	0.3098	0.7415	1.9616	2172	546	529	1075	279308	214984	174336	227715	896343	0.31	0.24	0.19	0.25	0.44	0.9019	0.3153	0.737	1.9629	1841	2	2	1	0	0	0	0	0	NA	0.2	0	0	0	1	1	50	37	98	128	313	0.16	0.12	0.31	0.41	0	0.72	0.875	0.2822	0.7528	1.839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8	8	16	192	186	443	450	1271	0.15	0.15	0.35	0.35	0	0.7	0.8546	0.171	0.8555	1.8646	3	3	952	694	1307	1685	4638	0.19	0.14	0.3	0.37	0	0.67	0.8883	0.245	0.7844	1.9023	6545	12814	4370	3164	6988	13572	5401	7382	2062	3437	3590	13407	2688	2441	2165	6693	2079	4968	6235	7455	4855	3950	7833	6676	3345	3543	3022	3658	5094	8359	5442	8081	4372	10809	4081	6430	3180	3195	6657	5289	4391	885	11786	4344	899	9347	4552	6595	889	1815	1047	2888	3704	2315	6377	4176	215	605	2492	494	2291	298	592	453
GCF_000430485.1	NZ_KE387150	NZ_KE387150.1	Thermococcus sp. PK ThePKDRAFT_TPC.6; whole genome shotgun sequence.	179482	174711	138088	138066	3700	634047	0.28	0.28	0.22	0.22	0.01	0.44	0.9462	0.0135	0.9866	1.9856	336	358	694	169896	132402	103589	138816	544703	0.31	0.24	0.19	0.26	0.45	0.9001	0.3109	0.7409	1.96	1622	307	310	617	158447	122859	95900	129020	506226	0.32	0.24	0.19	0.26	0.44	0.9017	0.3195	0.7342	1.9625	1445	2	2	1	0	0	0	0	0	NA	0.3333	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	15	19	212	239	525	550	1526	0.14	0.15	0.35	0.36	0	0.71	0.8576	0.1643	0.8569	1.8659	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3644	6831	2463	1733	4118	7512	3168	4237	1157	2068	2340	7743	1584	1247	1299	3605	1222	2758	3233	4348	2579	2353	3929	4225	1985	1934	1581	2193	3045	4843	2958	4484	2250	5927	2391	3361	1633	1832	3460	2905	2370	503	6862	2318	600	5660	2620	3955	548	1140	579	1535	2214	1400	3490	2466	128	358	1377	318	1332	150	352	287
GCF_000430485.1	NZ_KE387151	NZ_KE387151.1	Thermococcus sp. PK ThePKDRAFT_TPC.7; whole genome shotgun sequence.	30453	29782	21792	24026	400	106453	0.29	0.28	0.2	0.23	0	0.43	0.9436	0.0599	0.9425	1.9838	86	44	130	28941	22863	17238	23343	92385	0.31	0.25	0.19	0.25	0.44	0.9018	0.303	0.7467	1.9611	258	83	38	121	27570	21538	16301	22233	87642	0.31	0.25	0.18	0.25	0.44	0.9025	0.3191	0.7348	1.9621	218	0	0	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	2	3	34	38	81	89	242	0.14	0.16	0.33	0.37	0	0.7	0.8628	0.1277	0.8813	1.8739	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	702	1090	525	355	831	1094	607	797	153	384	355	1377	260	197	246	597	216	502	554	778	455	403	652	696	337	278	278	449	521	923	465	739	380	1107	440	583	297	308	570	459	410	63	1211	362	78	899	439	681	115	196	74	305	375	248	583	474	16	56	238	46	214	33	88	48