GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_017873335.1	NZ_JAGGKB010000001	NZ_JAGGKB010000001.1	Thermococcus stetteri strain DSM 5262 Ga0451167_01; whole genome shotgun sequence.	209417	205352	231366	229727	875862	0.24	0.23	0.26	0.26	0.53	0.9476	0.0134	0.9868	1.9979	458	462	920	198223	155215	187194	219390	760022	0.26	0.21	0.24	0.29	0.53	0.9024	0.2576	0.7814	1.9729	1301	411	412	823	183535	142985	172903	202643	702066	0.26	0.21	0.24	0.29	0.53	0.9037	0.2625	0.7775	1.9755	936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	3	4	118	92	236	301	747	0.17	0.18	0.29	0.36	0	0.65	0.8339	0.2653	0.7721	1.888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9	10	19	229	232	521	522	1504	0.15	0.15	0.35	0.35	0	0.69	0.8483	0.2002	0.8326	1.8734	1	3	4	951	684	1384	1750	4769	0.18	0.14	0.32	0.36	0	0.69	0.8807	0.1942	0.8283	1.8868	5442	12324	2016	1810	3092	14741	2741	2711	2247	3090	1031	5910	1533	3078	956	6304	998	4045	7274	2823	5324	2867	10834	3334	3711	4022	1493	1301	1809	4969	5591	4647	7069	7830	1642	7662	3128	2945	7306	7487	4425	1732	3815	6035	842	6369	3954	2642	336	624	1417	3895	839	1310	7868	2211	131	716	3865	373	561	175	517	233
GCF_017873335.1	NZ_JAGGKB010000002	NZ_JAGGKB010000002.1	Thermococcus stetteri strain DSM 5262 Ga0451167_02; whole genome shotgun sequence.	92387	94167	102711	105283	394548	0.23	0.24	0.26	0.27	0.53	0.9483	0.0219	0.9783	1.9978	268	175	443	85270	68336	82491	96227	332324	0.26	0.21	0.24	0.29	0.54	0.8999	0.2593	0.7801	1.9695	608	244	150	394	80265	63585	77378	90292	311520	0.26	0.21	0.24	0.29	0.53	0.9022	0.2661	0.7748	1.9742	436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	21	24	25	42	112	0.19	0.21	0.22	0.38	0	0.6	0.7712	0.3218	0.7345	1.936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9	10	19	206	224	530	553	1513	0.14	0.15	0.35	0.37	0	0.72	0.863	0.1301	0.8829	1.8563	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2648	5422	836	823	1353	6405	1351	1204	834	1348	471	2457	707	1348	420	2668	472	1758	3179	1199	2158	1415	4908	1430	1668	2014	565	546	815	2254	2519	1960	3178	3604	669	3369	1485	1296	3136	3531	1909	762	1493	2809	387	2990	1721	1058	142	292	602	1707	378	628	3572	922	49	293	1842	204	219	91	254	93
GCF_017873335.1	NZ_JAGGKB010000003	NZ_JAGGKB010000003.1	Thermococcus stetteri strain DSM 5262 Ga0451167_03; whole genome shotgun sequence.	64647	65996	72561	71337	274541	0.24	0.24	0.26	0.26	0.52	0.9481	0.0188	0.9813	1.9983	123	180	303	61018	47717	57167	67074	232976	0.26	0.21	0.24	0.29	0.53	0.9018	0.2506	0.7863	1.9757	476	105	164	269	55509	42690	51789	60927	210915	0.26	0.21	0.24	0.29	0.53	0.9021	0.2571	0.7814	1.9766	357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	20	12	10	18	60	0.33	0.2	0.17	0.3	0	0.47	0.8305	0.5357	0.5778	1.9446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	0	5	63	58	135	139	395	0.16	0.15	0.34	0.35	0	0.69	0.8634	0.0799	0.9251	1.8848	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1720	3842	611	535	903	4564	817	904	624	819	319	1797	444	888	257	1824	319	1160	2043	794	1444	932	3355	1041	1093	1175	380	350	529	1428	1763	1434	2106	2390	488	2322	1023	888	2100	2215	1286	611	1130	1770	311	1918	1193	840	108	182	427	1166	261	439	2360	654	35	230	1148	131	146	50	184	85
GCF_017873335.1	NZ_JAGGKB010000004	NZ_JAGGKB010000004.1	Thermococcus stetteri strain DSM 5262 Ga0451167_04; whole genome shotgun sequence.	37720	38486	41993	40527	158726	0.24	0.24	0.26	0.26	0.52	0.9452	0.0278	0.9726	1.9987	71	95	166	33044	26061	30809	36860	126774	0.26	0.21	0.24	0.29	0.53	0.9013	0.2686	0.7718	1.9725	244	63	83	146	30898	24060	28735	34393	118086	0.26	0.21	0.24	0.29	0.53	0.9023	0.2741	0.767	1.9739	173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	0	3	37	39	78	78	232	0.16	0.17	0.34	0.34	0	0.67	0.8879	0.0752	0.9283	1.9076	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	918	2034	346	293	551	2572	464	507	355	537	179	1031	231	522	123	1078	171	667	1260	513	867	413	1726	607	551	588	238	249	290	836	1000	766	1062	1259	266	1235	598	475	1207	1272	644	348	690	1057	144	1040	734	470	63	109	263	757	191	235	1274	330	25	136	660	58	100	31	90	56
GCF_017873335.1	NZ_JAGGKB010000005	NZ_JAGGKB010000005.1	Thermococcus stetteri strain DSM 5262 Ga0451167_05; whole genome shotgun sequence.	34445	36129	39793	38450	148817	0.23	0.24	0.27	0.26	0.53	0.9428	0.041	0.9598	1.9978	69	89	158	32504	25428	30171	36540	124643	0.26	0.21	0.24	0.29	0.53	0.9024	0.2641	0.7749	1.9751	532	57	80	137	28465	21878	26131	31784	108258	0.27	0.21	0.23	0.29	0.53	0.9021	0.2753	0.7663	1.9748	336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	13	11	32	31	87	0.15	0.13	0.37	0.36	0	0.72	0.8809	0.0992	0.9075	1.8482	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	818	1891	287	261	463	2439	440	377	372	368	167	1033	253	461	152	902	155	711	1124	469	796	381	1737	527	501	601	205	204	255	760	844	715	1008	1226	241	1109	518	488	1008	1034	666	299	614	910	151	963	683	429	61	94	254	624	162	181	1384	285	19	145	540	61	101	35	83	41
GCF_017873335.1	NZ_JAGGKB010000006	NZ_JAGGKB010000006.1	Thermococcus stetteri strain DSM 5262 Ga0451167_06; whole genome shotgun sequence.	24450	25446	27741	27447	105084	0.23	0.24	0.26	0.26	0.53	0.9424	0.0253	0.9751	1.998	47	64	111	22811	18150	21556	25584	88101	0.26	0.21	0.24	0.29	0.53	0.8994	0.2696	0.7721	1.9722	164	43	56	99	21342	16680	20003	23773	81798	0.26	0.21	0.24	0.29	0.53	0.9002	0.2711	0.7703	1.9729	79	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	11	9	18	19	57	0.19	0.16	0.32	0.33	0	0.65	0.8305	0.127	0.8828	1.932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	598	1437	251	202	383	1739	322	310	227	365	155	708	207	363	113	689	103	502	806	310	626	327	1297	407	398	452	171	166	230	597	636	556	831	865	199	875	384	329	817	834	515	194	426	691	97	756	471	328	45	70	164	446	123	169	915	275	20	72	490	42	60	21	58	31
GCF_017873335.1	NZ_JAGGKB010000007	NZ_JAGGKB010000007.1	Thermococcus stetteri strain DSM 5262 Ga0451167_07; whole genome shotgun sequence.	19388	19096	19390	19328	77202	0.25	0.25	0.25	0.25	0.5	0.9468	0.0092	0.9909	2	32	39	71	17532	13859	14410	17928	63729	0.28	0.22	0.22	0.28	0.5	0.9004	0.2864	0.7575	1.9669	233	31	32	63	16462	12799	13343	16640	59244	0.28	0.22	0.22	0.28	0.5	0.9005	0.29	0.7551	1.9662	190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	445	929	211	170	302	1171	286	308	165	268	184	598	181	260	105	524	112	376	545	307	401	215	701	386	236	325	147	154	243	462	408	442	473	618	192	576	245	218	560	525	329	131	477	457	69	560	346	279	27	83	117	290	142	139	633	204	6	58	231	41	77	13	44	21