GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_900109425.1	NZ_FOIW01000003	NZ_FOIW01000003.1	Thermococcus thioreducens strain OGL-20P; whole genome shotgun sequence.	70192	64438	80566	79901	0	295097	0.24	0.22	0.27	0.27	0.54	0.9476	0.0469	0.9549	1.9939	210	138	348	67749	53830	69254	80585	271418	0.25	0.2	0.25	0.3	0.55	0.9016	0.2437	0.7921	1.9696	762	197	125	322	64962	51460	65729	76356	258507	0.25	0.2	0.25	0.3	0.54	0.903	0.2489	0.7882	1.9727	659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	0	1	42	36	102	134	314	0.13	0.11	0.32	0.43	0	0.75	0.8619	0.2125	0.8092	1.7977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	5	10	119	112	275	268	774	0.15	0.14	0.36	0.34	0.7	0.8536	0.2116	0.8245	1.8582	0	2	2	919	676	1277	1647	4519	0.2	0.15	0.28	0.37	0.65	0.901	0.2726	0.7604	1.9218	2063	3891	625	449	1150	5338	913	977	848	1229	404	1889	515	1192	305	2285	288	1722	2737	1011	2382	993	4024	1120	1371	1777	341	414	647	1733	2007	1472	2732	2986	629	2812	1117	1270	2624	2937	1669	879	1414	2490	314	2051	1666	942	140	231	590	1743	306	420	2810	627	51	459	1389	204	201	55	216	83
GCF_900109425.1	NZ_FOIW01000002	NZ_FOIW01000002.1	Thermococcus thioreducens strain OGL-20P; whole genome shotgun sequence.	182138	174872	204053	200628	500	762191	0.24	0.23	0.27	0.26	0.53	0.9487	0.0288	0.9717	1.9966	393	446	839	177673	143436	174225	202422	697756	0.26	0.21	0.24	0.29	0.54	0.9025	0.2481	0.7884	1.9704	1280	364	404	768	168504	135379	164372	191358	659613	0.26	0.21	0.24	0.29	0.53	0.9037	0.2528	0.7847	1.9739	1153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	57	33	101	131	322	0.18	0.1	0.31	0.41	0	0.72	0.846	0.396	0.675	1.8315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	13	13	26	294	311	725	741	2071	0.14	0.15	0.35	0.36	0.71	0.8634	0.1273	0.8853	1.8658	0	1	1	17	17	42	46	122	0.14	0.14	0.34	0.38	0.72	0.8617	0.0455	0.9565	1.8526	5348	10414	1677	1286	2823	13371	2246	2761	2144	2850	1131	5121	1378	2897	952	5714	823	3997	6647	3010	5848	2877	9595	3228	3377	4583	991	1175	1993	4497	5165	4127	6736	7767	1545	7123	2917	3297	6862	7190	3977	2105	3611	6213	826	5763	3926	2401	326	670	1332	3835	870	1132	7138	1511	103	1008	3702	573	455	166	499	246
GCF_900109425.1	NZ_FOIW01000001	NZ_FOIW01000001.1	Thermococcus thioreducens strain OGL-20P; whole genome shotgun sequence.	234602	235204	267927	271033	1061	1009827	0.23	0.23	0.27	0.27	0.53	0.9465	0.007	0.993	1.996	611	546	1157	236157	186937	229873	270973	923940	0.26	0.2	0.24	0.3	0.54	0.9028	0.2552	0.7828	1.9733	2229	577	515	1092	227269	180021	221722	261292	890304	0.26	0.2	0.24	0.3	0.54	0.9032	0.2562	0.7819	1.9742	1765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	3	10	121	123	275	287	806	0.15	0.15	0.34	0.35	0.7	0.8449	0.1591	0.8639	1.8765	1	0	1	17	17	42	46	122	0.14	0.14	0.34	0.38	0.72	0.8617	0.0455	0.9565	1.8526	7192	13815	2318	1715	4003	18726	2894	3601	3040	3744	1495	7251	1778	3874	1268	7560	1035	5722	8877	3950	8269	3438	13178	4142	4448	5916	1346	1500	2453	6075	6897	5637	8976	10276	2056	9640	3935	4479	8670	9752	5558	2793	5128	8158	1128	7658	5543	3274	455	899	1879	5680	1056	1502	9794	2062	167	1533	4784	769	673	218	707	409