GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000258515.1	NZ_AJLF01000001	NZ_AJLF01000001.1	Thermococcus zilligii AN1 TziAN1_1; whole genome shotgun sequence.	239303	239383	288746	291184	1058616	0.23	0.23	0.27	0.28	0.55	0.9478	0.0044	0.9956	1.9934	605	524	1129	240968	189063	244260	288600	962891	0.25	0.2	0.25	0.3	0.55	0.9017	0.2595	0.7787	1.9709	2349	559	485	1044	227280	177671	229073	271247	905271	0.25	0.2	0.25	0.3	0.55	0.9029	0.2637	0.7752	1.9735	1952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10	15	25	286	292	705	715	1998	0.14	0.15	0.35	0.36	0	0.71	0.8539	0.1328	0.8832	1.8615	2	2	34	36	84	90	244	0.14	0.15	0.34	0.37	0	0.71	0.8549	0.0631	0.9389	1.8639	6966	13646	2441	1609	3507	19141	3020	2900	3363	3648	1159	8039	1724	4149	995	7806	915	5826	8974	3700	8166	3288	14847	4193	4694	5682	1100	1499	2054	5120	7095	5227	8765	9871	1864	9585	4150	5105	8973	10947	5749	2711	5564	8940	1142	8220	7346	3044	325	774	1925	5745	1310	1301	11469	1899	125	1289	5014	488	521	181	738	184
GCF_000258515.1	NZ_AJLF01000002	NZ_AJLF01000002.1	Thermococcus zilligii AN1 TziAN1_2; whole genome shotgun sequence.	123873	127181	149272	147069	547395	0.23	0.23	0.27	0.27	0.54	0.947	0.0206	0.9796	1.995	273	318	591	122644	95844	121472	144142	484102	0.25	0.2	0.25	0.3	0.55	0.9022	0.2543	0.7831	1.9702	1123	254	294	548	115955	90573	114505	135975	457008	0.25	0.2	0.25	0.3	0.54	0.9033	0.2586	0.7796	1.9736	1016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	55	33	107	126	321	0.17	0.1	0.33	0.39	0	0.73	0.8603	0.3315	0.7246	1.8314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	12	17	192	195	480	480	1347	0.14	0.14	0.36	0.35	0	0.71	0.8594	0.1685	0.8582	1.8519	2	2	912	662	1280	1662	4516	0.2	0.15	0.28	0.37	0	0.65	0.9025	0.2807	0.7543	1.9184	3511	6940	1310	909	1806	9466	1638	1600	1620	1895	635	4033	903	1997	558	3984	507	2825	4491	1821	3901	1814	7186	2046	2403	2856	617	817	1085	2713	3540	2634	4290	5178	1061	4803	2102	2464	4507	5438	2807	1314	2772	4351	694	4259	3645	1577	215	402	945	2768	692	738	5741	1070	70	570	2613	300	316	104	374	95
GCF_000258515.1	NZ_AJLF01000003	NZ_AJLF01000003.1	Thermococcus zilligii AN1 TziAN1_3; whole genome shotgun sequence.	23739	24586	27297	28694	104316	0.23	0.24	0.26	0.28	0.54	0.9451	0.0425	0.9584	1.9958	68	49	117	23567	18903	22994	27245	92709	0.25	0.2	0.25	0.3	0.55	0.9027	0.2454	0.7907	1.9662	161	57	46	103	21353	17232	20889	24760	84234	0.26	0.2	0.24	0.3	0.54	0.9035	0.2518	0.786	1.97	145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	42	32	104	136	314	0.13	0.1	0.33	0.43	0	0.76	0.8603	0.2685	0.7633	1.7748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	0	4	47	46	106	109	308	0.15	0.15	0.34	0.35	0	0.7	0.8712	0.108	0.8992	1.8786	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	663	1239	250	171	346	1672	302	363	287	314	136	722	174	361	125	720	109	537	813	396	664	304	1225	456	411	511	121	166	287	454	592	455	788	950	188	872	369	465	789	1058	497	249	544	833	151	802	695	288	42	93	185	519	209	134	960	201	8	95	524	38	71	23	72	20
GCF_000258515.1	NZ_AJLF01000004	NZ_AJLF01000004.1	Thermococcus zilligii AN1 TziAN1_4; whole genome shotgun sequence.	10067	10349	12367	11754	44537	0.23	0.23	0.28	0.26	0.54	0.9349	0.0392	0.9616	1.9947	14	21	35	9613	7747	9933	11509	38802	0.24	0.2	0.25	0.3	0.55	0.9025	0.238	0.7955	1.9746	2	14	17	31	8974	7032	9194	10623	35823	0.25	0.2	0.25	0.3	0.55	0.9021	0.2402	0.7935	1.9744	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	243	524	90	104	113	763	152	111	118	193	55	275	54	177	41	357	33	222	384	129	264	138	547	170	209	270	43	67	72	215	255	243	332	374	87	404	153	177	406	409	243	107	188	377	36	325	268	134	12	26	67	192	46	70	416	83	4	46	244	28	25	6	21	4
GCF_000258515.1	NZ_AJLF01000005	NZ_AJLF01000005.1	Thermococcus zilligii AN1 TziAN1_5; whole genome shotgun sequence.	2498	2310	2396	2491	9695	0.26	0.24	0.25	0.26	0.5	0.9369	0.0585	0.9433	1.9993	7	4	11	2357	1767	2021	2330	8475	0.28	0.22	0.23	0.27	0.5	0.9081	0.241	0.7974	1.9792	8	7	4	11	2357	1767	2021	2330	8475	0.28	0.22	0.23	0.27	0.5	0.9081	0.241	0.7974	1.9792	8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	57	109	30	45	46	134	38	54	26	38	13	74	27	44	17	99	19	66	66	46	51	35	99	48	55	66	20	28	23	65	63	41	68	99	45	101	27	36	76	78	39	11	64	72	8	76	55	44	4	11	5	50	19	16	70	33	1	7	47	2	7	2	8	2