GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_014646795.1	NZ_BMNY01000001	NZ_BMNY01000001.1	Thermogymnomonas acidicola strain JCM 13583 sequence1; whole genome shotgun sequence.	255469	254299	320029	323573	384	1153754	0.22	0.22	0.28	0.28	0	0.56	0.9482	0.0078	0.9922	1.9901	654	525	1179	247893	201965	266051	322470	1038379	0.24	0.2	0.25	0.31	0.56	0.9006	0.2637	0.7747	1.9679	2395	565	461	1026	219814	178296	234492	285623	918225	0.24	0.19	0.25	0.31	0	0.56	0.9009	0.2697	0.7701	1.968	1990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	1	2	130	87	168	223	608	0.21	0.14	0.28	0.37	0	0.64	0.8885	0.337	0.7227	1.9159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18	15	33	467	506	708	805	2486	0.19	0.2	0.28	0.32	0	0.61	0.8842	0.1733	0.8466	1.9537	2	1	3	1083	871	1095	1463	4512	0.22	0.19	0.26	0.33	0	0.59	0.9052	0.1967	0.8238	1.9639	8965	11268	2538	1808	6279	16933	2877	1819	6226	2820	1168	4334	3511	4164	1336	8294	2289	12201	11279	1706	11584	4067	10221	4379	7036	4913	1220	649	1968	3212	6243	3636	7505	12383	3853	11003	4141	3864	9397	9221	5664	1359	1365	11869	2009	3917	6096	1211	370	938	3351	4996	353	2304	18402	2640	210	792	4150	541	295	102	714	117
GCF_014646795.1	NZ_BMNY01000002	NZ_BMNY01000002.1	Thermogymnomonas acidicola strain JCM 13583 sequence2; whole genome shotgun sequence.	72535	72081	91193	91379	391	327579	0.22	0.22	0.28	0.28	0	0.56	0.9479	0.0042	0.9959	1.9896	150	141	291	65923	57558	75969	88120	287570	0.23	0.2	0.26	0.31	0.57	0.9032	0.2289	0.8018	1.9651	470	129	124	253	58957	51115	67341	78349	255762	0.23	0.2	0.26	0.31	0	0.57	0.9034	0.2289	0.8016	1.9652	371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	3	3	37	44	66	73	220	0.17	0.2	0.3	0.33	0	0.63	0.8792	0.198	0.8286	1.9395	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2459	2337	676	485	1619	4152	801	567	1804	1076	464	1193	987	1231	382	2344	667	3326	3367	540	3295	1140	2969	1220	1920	1468	369	239	688	902	1761	949	2133	3034	1048	2961	1194	1112	2709	2726	1641	399	473	3501	491	1000	1694	398	83	328	1094	1528	167	625	4769	691	60	263	1217	162	113	27	164	52
GCF_014646795.1	NZ_BMNY01000003	NZ_BMNY01000003.1	Thermogymnomonas acidicola strain JCM 13583 sequence3; whole genome shotgun sequence.	48430	46491	60688	63270	0	218879	0.22	0.21	0.28	0.29	0	0.57	0.9415	0.0413	0.9596	1.987	142	82	224	45977	39626	52912	61914	200429	0.23	0.2	0.26	0.31	0.57	0.9007	0.2546	0.7825	1.9667	390	114	75	189	40885	34815	46743	54995	177438	0.23	0.2	0.26	0.31	0	0.57	0.9017	0.2629	0.7762	1.9674	215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6	2	8	100	116	181	211	608	0.16	0.19	0.3	0.35	0	0.65	0.8663	0.1742	0.8432	1.9282	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1735	2111	487	327	1234	3156	583	336	1263	489	199	735	691	821	220	1556	472	2422	2351	314	2375	790	2142	731	1394	950	242	102	385	559	1235	699	1594	2205	719	2088	817	760	1887	1898	1103	269	211	2388	340	687	1182	179	69	186	690	1042	52	426	3439	466	41	147	830	119	39	17	131	19
GCF_014646795.1	NZ_BMNY01000004	NZ_BMNY01000004.1	Thermogymnomonas acidicola strain JCM 13583 sequence4; whole genome shotgun sequence.	5323	4826	6384	6887	0	23420	0.23	0.21	0.27	0.29	0	0.57	0.9319	0.0869	0.9168	1.9858	18	9	27	5228	3760	5317	6833	21138	0.24	0.18	0.25	0.32	0.57	0.8966	0.2639	0.7766	1.9652	62	15	8	23	4130	3089	4283	5409	16911	0.25	0.19	0.25	0.32	0	0.57	0.8967	0.2711	0.7702	1.9672	23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	0	2	31	29	49	50	159	0.19	0.18	0.31	0.31	0	0.62	0.8808	0.0407	0.9613	1.9556	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	159	226	40	38	103	346	42	26	109	51	17	90	59	84	17	156	36	256	167	25	210	70	185	86	148	81	21	10	33	51	125	68	123	205	71	218	98	71	173	185	104	35	17	206	41	54	109	26	9	26	65	80	9	36	379	38	5	11	71	13	2	4	14	4
GCF_014646795.1	NZ_BMNY01000005	NZ_BMNY01000005.1	Thermogymnomonas acidicola strain JCM 13583 sequence5; whole genome shotgun sequence.	968	777	447	553	0	2745	0.35	0.28	0.16	0.2	0	0.36	0.9127	0.2155	0.8055	1.9377	2	0	2	731	529	304	413	1977	0.37	0.27	0.15	0.21	0.35	0.8905	0.3248	0.7226	1.9071	26	2	0	2	731	529	304	413	1977	0.37	0.27	0.15	0.21	0	0.35	0.8905	0.3248	0.7226	1.9071	26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	24	8	3	11	27	2	12	4	11	24	24	9	6	7	21	5	2	12	24	15	7	1	32	8	10	3	15	25	12	10	10	6	30	9	15	1	5	11	7	4	1	36	8	3	9	3	19	1	8	3	2	29	6	13	10	0	0	5	0	14	2	0	1
GCF_014646795.1	NZ_BMNY01000006	NZ_BMNY01000006.1	Thermogymnomonas acidicola strain JCM 13583 sequence6; whole genome shotgun sequence.	220	287	286	166	20	979	0.22	0.29	0.29	0.17	0.02	0.46	0.9175	0.3976	0.6735	1.9557	0	2	2	201	160	122	207	690	0.3	0.23	0.17	0.3	0.47	0.8966	0.3967	0.6841	1.9599	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0