GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_001748385.1	NZ_BCLI01000001	NZ_BCLI01000001.1	Vulcanisaeta thermophila strain CBA1501; whole genome shotgun sequence.	201343	202501	194167	193720	791731	0.25	0.26	0.25	0.24	0.49	0.9435	0.004	0.996	1.9997	448	395	843	188895	168784	150790	205299	713768	0.26	0.24	0.21	0.29	0.5	0.898	0.3024	0.7526	1.9665	1170	424	365	789	180621	161607	143479	195029	680736	0.27	0.24	0.21	0.29	0.49	0.8987	0.3051	0.7506	1.9687	1030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8	11	19	245	203	532	536	1516	0.16	0.14	0.35	0.35	0	0.7	0.8339	0.2503	0.7948	1.8554	2	2	925	622	1341	1687	4575	0.2	0.13	0.29	0.37	0	0.66	0.8929	0.3133	0.7316	1.9051	5949	7523	3529	1417	3803	11408	2773	5539	2834	2942	4516	2808	2540	2831	2919	4750	618	8478	5274	2395	4779	6815	4092	5936	2958	4192	4875	3121	2657	1798	2641	3472	2916	9290	3178	4564	2202	4448	7113	6578	2760	374	2228	5060	1128	6222	4066	1456	461	1211	1102	2904	3595	1247	12376	3857	139	199	1111	673	1477	337	313	145
GCF_001748385.1	NZ_BCLI01000002	NZ_BCLI01000002.1	Vulcanisaeta thermophila strain CBA1501; whole genome shotgun sequence.	378	236	344	379	1337	0.28	0.18	0.26	0.28	0.54	0.914	0.2797	0.766	1.9764	2	0	2	263	164	195	240	862	0.3	0.19	0.23	0.28	0.52	0.9089	0.3267	0.7247	1.9701	0	1	0	1	176	107	109	139	531	0.33	0.2	0.21	0.26	0.47	0.9095	0.3648	0.6961	1.9688	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	5	2	1	7	7	0	3	1	4	4	0	5	1	4	6	0	7	2	1	2	3	2	4	1	3	6	0	2	2	4	0	2	8	2	5	3	4	5	4	3	0	6	4	3	5	2	7	0	1	0	0	3	0	8	3	0	1	1	0	2	1	0	0
GCF_001748385.1	NZ_BCLI01000003	NZ_BCLI01000003.1	Vulcanisaeta thermophila strain CBA1501; whole genome shotgun sequence.	2880	2742	2397	2759	10778	0.27	0.25	0.22	0.26	0.48	0.9281	0.0948	0.9104	1.9967	6	5	11	2075	1781	1586	2198	7640	0.27	0.21	0.23	0.3	0.53	0.884	0.3433	0.7336	1.9292	0	6	3	9	2042	1761	1517	2126	7446	0.29	0.23	0.2	0.28	0.48	0.891	0.3657	0.7153	1.95	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	22	19	55	56	152	0.14	0.12	0.37	0.37	0	0.74	0.7879	0.1272	0.891	1.8157	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	73	114	37	28	28	136	42	68	27	21	42	28	17	31	42	48	7	93	49	21	41	95	46	64	47	46	50	42	34	21	20	44	20	99	44	59	18	47	63	66	20	2	30	52	15	72	26	13	3	15	17	29	30	20	127	40	3	0	16	4	24	5	1	0
GCF_001748385.1	NZ_BCLI01000004	NZ_BCLI01000004.1	Vulcanisaeta thermophila strain CBA1501; whole genome shotgun sequence.	159320	162597	157370	155471	634758	0.25	0.26	0.25	0.24	0.49	0.944	0.0162	0.9839	1.9998	334	357	691	149520	140867	121470	171057	582914	0.26	0.24	0.21	0.29	0.5	0.9001	0.2813	0.7667	1.9711	864	314	335	649	142910	134671	115750	163298	556629	0.26	0.24	0.2	0.29	0.5	0.9007	0.284	0.7647	1.9726	766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	6	13	164	149	352	363	1028	0.16	0.14	0.34	0.36	0	0.7	0.8408	0.3137	0.761	1.8382	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4988	6427	2561	1090	2816	9602	2342	4795	2376	2254	3726	2037	2078	2402	2398	3384	560	7185	4419	1995	4057	6095	3247	5112	2157	3233	3571	2656	2101	1333	2179	2831	2403	7153	2052	3790	1773	3734	5510	5660	2121	321	1584	4134	988	5444	3381	979	393	1142	973	2598	3250	1130	10681	2849	117	183	929	581	1014	296	236	137
GCF_001748385.1	NZ_BCLI01000005	NZ_BCLI01000005.1	Vulcanisaeta thermophila strain CBA1501; whole genome shotgun sequence.	64435	68475	63397	61574	257881	0.25	0.27	0.25	0.24	0.48	0.9407	0.045	0.9561	1.9989	121	169	290	63460	55840	50156	65794	235250	0.27	0.24	0.21	0.29	0.49	0.8967	0.3148	0.7452	1.9641	409	113	158	271	61475	53811	48365	63593	227244	0.27	0.24	0.21	0.28	0.49	0.8979	0.3135	0.7451	1.967	346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	3	4	48	41	114	119	322	0.15	0.13	0.35	0.37	0	0.72	0.8364	0.1714	0.852	1.8438	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2081	2711	1198	466	1248	3578	841	1839	953	928	1440	996	853	1006	901	1663	211	2678	1734	840	1658	2225	1429	1972	850	1400	1869	1063	861	659	1000	1071	943	3060	1148	1515	818	1426	2434	2155	913	136	879	1670	343	1989	1276	565	147	459	363	933	1187	458	3926	1326	57	65	359	265	438	107	106	60
GCF_001748385.1	NZ_BCLI01000006	NZ_BCLI01000006.1	Vulcanisaeta thermophila strain CBA1501; whole genome shotgun sequence.	25008	24104	24761	23005	96878	0.26	0.25	0.26	0.24	0.49	0.9407	0.0552	0.9465	1.9993	46	53	99	21657	19681	17639	23606	82583	0.26	0.24	0.21	0.29	0.5	0.8941	0.3204	0.7418	1.9589	156	42	48	90	20154	18152	16231	21648	76185	0.27	0.24	0.21	0.28	0.49	0.896	0.3189	0.742	1.9649	137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	2	3	33	29	93	91	246	0.13	0.12	0.38	0.37	0	0.75	0.8146	0.4219	0.6636	1.7775	1	1	25	9	42	45	121	0.21	0.07	0.35	0.37	0	0.72	0.8333	0.5051	0.6467	1.8095	615	771	386	140	394	1234	318	592	346	318	506	326	260	318	404	610	76	929	567	290	526	837	440	654	296	518	595	402	274	198	329	390	316	871	382	521	256	510	839	675	324	37	304	509	133	729	449	161	64	143	131	324	358	145	1388	432	17	26	117	107	185	50	23	10
GCF_001748385.1	NZ_BCLI01000007	NZ_BCLI01000007.1	Vulcanisaeta thermophila strain CBA1501; whole genome shotgun sequence.	21056	19964	19302	20720	81042	0.26	0.25	0.24	0.26	0.49	0.9407	0.0621	0.9399	1.9992	46	40	86	19499	17670	15872	21281	74322	0.26	0.24	0.21	0.29	0.5	0.8997	0.31	0.7476	1.9655	73	45	35	80	19014	17232	15493	20678	72417	0.26	0.24	0.2	0.29	0.49	0.9014	0.3066	0.7486	1.9709	73	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	2	3	36	34	81	81	232	0.15	0.15	0.35	0.36	0	0.7	0.827	0.1415	0.8768	1.8632	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	640	795	368	134	398	1194	224	576	324	293	475	258	271	313	318	536	61	989	593	231	547	684	447	688	289	457	594	401	260	167	313	361	300	964	322	487	244	498	813	733	301	51	226	543	128	602	431	131	51	103	127	313	375	106	1295	368	14	23	120	49	137	35	31	19
GCF_001748385.1	NZ_BCLI01000008	NZ_BCLI01000008.1	Vulcanisaeta thermophila strain CBA1501; whole genome shotgun sequence.	6383	5900	5851	6805	24939	0.26	0.24	0.23	0.27	0.51	0.9324	0.1147	0.8921	1.9972	21	10	31	5963	5493	4999	6980	23435	0.26	0.24	0.21	0.3	0.51	0.8943	0.276	0.7709	1.9753	8	21	9	30	5762	5296	4793	6673	22524	0.26	0.24	0.21	0.3	0.51	0.8944	0.2783	0.7691	1.9754	8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	214	273	99	40	95	455	79	189	126	74	130	69	88	87	92	144	14	310	169	71	187	216	145	181	90	149	182	125	56	38	89	102	89	295	86	153	65	162	219	228	106	14	39	154	45	212	129	33	12	34	42	85	126	47	500	107	7	4	48	20	42	13	10	4
GCF_001748385.1	NZ_BCLI01000009	NZ_BCLI01000009.1	Vulcanisaeta thermophila strain CBA1501; whole genome shotgun sequence.	8714	8498	8711	9090	35013	0.25	0.24	0.25	0.26	0.51	0.9346	0.0338	0.9668	1.9996	14	20	34	7817	7291	7122	8730	30960	0.25	0.24	0.21	0.3	0.51	0.8988	0.2966	0.7574	1.9704	58	14	17	31	7340	6868	6790	8321	29319	0.25	0.24	0.21	0.31	0.51	0.8983	0.3076	0.7488	1.9698	20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	204	258	133	90	142	502	123	194	128	160	172	92	118	164	156	231	33	395	270	105	207	313	180	205	133	230	196	134	113	68	83	128	137	296	168	176	88	220	426	330	147	17	60	220	52	271	142	50	14	44	50	93	126	54	529	203	8	9	70	34	53	16	7	3
GCF_001748385.1	NZ_BCLI01000010	NZ_BCLI01000010.1	Vulcanisaeta thermophila strain CBA1501; whole genome shotgun sequence.	23064	22403	21145	21625	88237	0.26	0.25	0.24	0.25	0.48	0.9415	0.0258	0.9746	1.9992	46	44	90	20995	19287	16869	22662	79813	0.26	0.24	0.21	0.29	0.5	0.899	0.289	0.7646	1.9653	39	43	44	87	20679	19012	16570	22315	78576	0.27	0.24	0.2	0.29	0.49	0.9004	0.2942	0.761	1.9678	39	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	0	2	24	22	58	62	166	0.14	0.13	0.35	0.37	0	0.72	0.8332	0.1313	0.8788	1.8418	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	718	891	406	178	381	1342	348	622	324	331	531	288	269	361	353	527	71	940	629	300	508	807	483	666	370	446	543	372	319	207	307	440	332	1058	325	555	229	523	851	756	302	34	233	498	92	763	445	156	50	128	132	353	471	172	1411	474	17	22	181	74	188	37	33	19