GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the whole sequence	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the whole sequence	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the whole sequence	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the whole sequence	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the whole sequence	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_001192795.1	NZ_DF968179	NZ_DF968179.1	Flexilinea flocculi strain TC1; whole genome shotgun sequence.	149569	154803	104746	112274	436	521828	0.29	0.3	0.2	0.22	0.42	0.9421	0.0519	0.9496	1.9787	229	170	399	127843	124895	88435	100685	441858	0.29	0.28	0.2	0.23	0.43	0.9027	0.1669	0.8512	1.9721	449	203	157	360	120105	116934	82885	94283	414207	0.29	0.28	0.2	0.23	0.43	0.9034	0.1662	0.8518	1.9724	356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9	5	14	220	226	273	319	1038	0.21	0.22	0.26	0.31	0.57	0.8865	0.1797	0.8395	1.969	1	0	1	408	284	330	473	1495	0.27	0.19	0.22	0.32	0	0.54	0.9197	0.3573	0.6969	1.9729	3543	1654	1641	1475	3518	1860	2590	6022	2012	1748	4468	6749	1927	1515	1334	1775	1679	1582	2279	4648	3845	2510	1156	5835	2721	1764	530	2987	3706	3649	4346	2294	2134	1316	2483	1649	556	841	1166	1822	1304	1194	5822	1934	732	3057	1093	1082	911	1888	1245	1838	2578	1323	313	1378	55	1012	2397	1258	2790	196	109	1231
GCF_001192795.1	NZ_DF968180	NZ_DF968180.1	Flexilinea flocculi strain TC1; whole genome shotgun sequence.	190502	197102	139471	146315	1483	674873	0.28	0.29	0.21	0.22	0.42	0.944	0.041	0.9599	1.982	300	257	557	162812	157051	117122	133023	570008	0.29	0.27	0.2	0.24	0.44	0.903	0.1679	0.8505	1.9763	918	278	237	515	150734	145101	107908	123117	526860	0.29	0.27	0.2	0.23	0.44	0.9032	0.1673	0.851	1.9764	610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	1	1	22	11	28	39	100	0.22	0.11	0.28	0.39	0	0.67	0.8549	0.4975	0.609	1.8749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	4	7	110	134	138	184	566	0.19	0.24	0.24	0.32	0.57	0.8829	0.2399	0.7881	1.9715	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4810	2352	2005	1689	4636	2402	3453	7236	2536	2276	5407	8476	2105	1919	1577	2397	1910	2176	2975	5593	5410	3319	1588	6975	3445	2356	610	3589	4408	4469	5834	2845	2908	1527	3045	2212	764	1039	1510	2674	1789	1807	7650	2916	1083	3809	1418	1231	1193	2468	1481	2511	2964	1589	440	1671	64	1336	3042	1613	3166	302	149	1471
GCF_001192795.1	NZ_DF968181	NZ_DF968181.1	Flexilinea flocculi strain TC1; whole genome shotgun sequence.	678063	684910	465667	483062	2227	2313929	0.29	0.3	0.2	0.21	0.41	0.9464	0.0234	0.977	1.9761	998	820	1818	580124	555814	388769	447261	1971968	0.3	0.28	0.19	0.23	0.42	0.9028	0.1669	0.8516	1.9699	2044	927	767	1694	546349	523764	365327	420339	1855779	0.3	0.28	0.19	0.23	0.42	0.9029	0.1661	0.8523	1.9698	1780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	0	2	156	127	125	164	572	0.27	0.24	0.21	0.27	0	0.49	0.8879	0.2113	0.8143	1.9829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	13	11	24	366	397	464	566	1793	0.2	0.22	0.26	0.32	0.57	0.8918	0.1777	0.8402	1.9669	3	2	5	2259	1443	1549	2342	7593	0.28	0.18	0.22	0.32	0	0.54	0.9062	0.3804	0.6814	1.9656	15537	7770	7675	7094	16000	8468	12072	27219	8069	7806	20672	30449	9092	6720	5972	7960	7486	6784	9998	20170	15377	11482	5115	25926	10854	7957	2663	13008	16387	16482	19293	10721	9301	6695	11533	7289	2487	3513	5030	8249	5879	4971	26396	9079	3219	14106	5137	4902	4133	8683	5359	8157	12576	6028	1873	6670	281	4249	9481	5348	12457	944	469	5821