GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the whole sequence	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the whole sequence	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the whole sequence	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the whole sequence	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the whole sequence	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_001563285.1	NZ_CP005188	NZ_CP005188.1	Sphingobium sp. MI1205 chromosome 1; complete sequence.	633334	629517	1047577	1040822	3351250	0.19	0.19	0.31	0.31	0.62	0.9389	0.0063	0.9938	1.9558	1584	1714	3298	561197	567324	928483	972090	3029094	0.19	0.19	0.3	0.32	0.63	0.8913	0.1456	0.8705	1.944	4559	1466	1620	3086	530515	536126	878769	920154	2865564	0.19	0.19	0.3	0.32	0.63	0.8913	0.1463	0.8701	1.9439	3954	NA	NA	NA	NA	NA	NA	NA	0	0	NA	1	1	2	98	69	144	172	483	0.18	0.15	0.32	0.35	0	0.67	0.8784	0.2317	0.8011	1.9072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	27	18	45	666	695	1037	1138	3536	0.19	0.2	0.29	0.32	0	0.62	0.883	0.134	0.8785	1.9524	3	0	3	1112	911	1018	1356	4397	0.23	0.2	0.27	0.3	0	0.57	0.9068	0.2016	0.819	1.9706	24130	23735	3859	3321	13037	24335	11752	8273	10689	13412	10758	27766	2925	18748	2700	13729	2296	25670	24873	8410	49160	10535	20195	24239	25069	22331	2426	10756	14713	8046	38037	11800	30145	3784	3953	32919	7340	17024	6068	44777	18194	34815	6253	50637	6285	8143	13802	1103	1339	12090	15482	52454	919	5651	3401	4424	414	17978	22492	8259	6254	570	2116	4376
GCF_001563285.1	NZ_CP005189	NZ_CP005189.1	Sphingobium sp. MI1205 chromosome 2; complete sequence.	106328	106789	175534	178503	567154	0.19	0.19	0.31	0.31	0.62	0.9321	0.0105	0.9895	1.955	302	217	519	91375	94242	153768	162018	501403	0.18	0.19	0.31	0.32	0.63	0.8907	0.1261	0.8869	1.9451	619	288	195	483	85361	87977	144358	152077	469773	0.18	0.19	0.31	0.32	0.63	0.8906	0.1245	0.888	1.9449	575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	3	4	57	56	95	97	305	0.19	0.18	0.31	0.32	0	0.63	0.8896	0.1194	0.8897	1.945	0	3	3	1112	911	1018	1356	4397	0.23	0.2	0.27	0.3	0	0.57	0.9068	0.2016	0.819	1.9706	4114	3236	521	481	1908	3597	1467	1276	1828	2248	1839	4775	453	3223	436	2294	323	4219	4392	1411	8723	1531	2751	3837	4132	3569	316	1877	2848	1328	6266	1765	4946	624	662	5605	1136	2886	1023	7424	2984	5630	872	8554	1165	1058	2444	145	235	2145	2600	9080	99	783	555	629	63	3224	3853	1199	1000	67	353	564
GCF_001563285.1	NZ_CP005190	NZ_CP005190.1	Sphingobium sp. MI1205 plasmid pMI1; complete sequence.	54043	54671	91793	91628	292135	0.18	0.19	0.31	0.31	0.63	0.934	0.0067	0.9934	1.9523	128	152	280	45026	44489	76572	78070	244157	0.19	0.18	0.31	0.32	0.63	0.8911	0.1159	0.8956	1.9419	297	122	144	266	42561	41994	72695	74158	231408	0.19	0.18	0.31	0.32	0.63	0.8908	0.1156	0.8958	1.9415	297	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1971	1867	238	229	1004	2339	822	621	943	1126	862	1872	216	1555	205	1195	213	1929	2108	562	3250	753	2159	1737	2019	1886	195	711	1176	687	2958	949	2641	300	328	2723	687	1376	558	4031	1459	2669	511	4062	579	577	1210	128	127	957	1382	4068	62	387	361	298	40	1585	1951	552	524	47	184	414
GCF_001563285.1	NZ_CP005191	NZ_CP005191.1	Sphingobium sp. MI1205 plasmid pMI2; complete sequence.	54231	53448	89479	90330	287488	0.19	0.19	0.31	0.31	0.63	0.9358	0.012	0.9881	1.9541	135	160	295	44463	43659	74923	74926	237971	0.19	0.18	0.31	0.31	0.63	0.8915	0.1356	0.8781	1.9448	383	128	152	280	41954	41190	70636	70830	224610	0.19	0.18	0.31	0.31	0.63	0.8911	0.1374	0.8768	1.9441	365	NA	NA	NA	NA	NA	NA	NA	0	0	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1763	1765	257	267	1111	2423	894	674	795	1116	688	1927	233	1539	222	1131	201	1711	1967	585	3014	819	2346	2014	1831	1683	221	748	1025	677	2818	1026	2322	248	351	2565	778	1164	665	3946	1399	3066	525	3344	553	642	943	166	126	911	1261	3771	55	443	383	366	34	1592	1804	639	562	33	220	501
GCF_001563285.1	NZ_CP005192	NZ_CP005192.1	Sphingobium sp. MI1205 plasmid pMI3; complete sequence.	17255	17239	26849	27031	88374	0.2	0.2	0.3	0.31	0.61	0.9293	0.0038	0.9962	1.965	52	45	97	15318	13965	22769	23431	75483	0.21	0.19	0.3	0.31	0.61	0.8938	0.1337	0.8797	1.9567	159	45	41	86	13424	12050	19716	20582	65772	0.21	0.18	0.3	0.31	0.61	0.8931	0.1385	0.8756	1.9555	86	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	495	681	80	84	393	791	277	254	195	349	249	642	67	442	51	361	63	525	543	183	810	202	519	626	575	428	84	268	329	176	788	299	529	80	113	729	235	320	210	1027	375	1029	247	932	144	219	259	38	34	233	389	1011	35	143	89	85	12	455	479	198	226	17	57	146
GCF_001563285.1	NZ_CP005193	NZ_CP005193.1	Sphingobium sp. MI1205 plasmid pMI4; complete sequence.	6149	6059	10531	10235	32974	0.19	0.18	0.32	0.31	0.63	0.9175	0.0216	0.9786	1.9507	27	14	41	5047	4532	8140	8807	26526	0.19	0.17	0.3	0.33	0.64	0.8857	0.1571	0.8589	1.9344	115	26	14	40	4867	4366	7887	8560	25680	0.19	0.17	0.3	0.34	0.64	0.8857	0.1597	0.8567	1.9334	115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	210	274	30	22	107	338	86	64	55	151	63	202	19	186	20	131	20	227	211	48	321	77	208	226	202	192	38	118	106	73	266	112	219	42	27	319	82	135	68	442	154	396	67	410	57	51	128	18	8	131	147	509	8	43	29	31	9	193	226	60	69	5	26	48