GBRAP

Genome-Based Retrieval and Analysis Parser


Bird : Lonchura_striata_domestica
Assembly Assembly Locus_ID Locus_ID Version Version Definition Sequence description bp_chromo_A Total number of 'A' nucleotides in the whole sequence bp_chromo_T Total number of 'T' nucleotides in the whole sequence bp_chromo_C Total number of 'C' nucleotides in the whole sequence bp_chromo_G Total number of 'G' nucleotides in the whole sequence bp_chromo_N Total number of 'N' nucleotides in the whole sequence bp_chromo_tot Total number of nucleotides in the whole sequence fr_chromo_A Frequency of 'A' nucleotides in the whole sequence fr_chromo_T Frequency of 'T' nucleotides in the whole sequence fr_chromo_C Frequency of 'C' nucleotides in the whole sequence fr_chromo_G Frequency of 'G' nucleotides in the whole sequence fr_chromo_N Frequency of 'N' nucleotides in the whole sequence GC_chromo Percentage of ā€˜G’ + ā€˜C’ nucleotides in the whole sequence topo_entropy_chromo Topological entropy of the whole sequence chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee shannon_chromo Shannon entropy of the whole sequence n_gene_pos Number of genes in the positive strand n_gene_neg Number of genes in the negative strand n_gene_tot Total number of genes in the chromosome bp_gene_A Number of 'A' bases in total genes bp_gene_T Number of 'T' bases in total genes bp_gene_C Number of 'C' bases in total genes bp_gene_G Number of 'G' bases in total genes bp_gene_N Number of 'N' bases in total genes bp_gene_tot Total number of bases in total genes fr_gene_A Frequency of 'A' bases among total gene bases fr_gene_T Frequency of 'T' bases among total gene bases fr_gene_C Frequency of 'C' bases among total gene bases fr_gene_G Frequency of 'G' bases among total gene bases fr_gene_N Frequency of 'N' bases among total gene bases GC_gene Percentage of 'G' and 'C' bases in total genes topo_entropy_gene Topological entropy calculated from total gene sequences chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes shannon_gene Shannon entropy score for total genes bp_gene_overlap_tot Number of bases overlapping between genes on two strands n_cds_pos Number of CDS in the positive strand n_cds_neg Number of CDS in the negative strand n_cds_tot Total number of CDS in the chromosome bp_cds_A Number of 'A' bases in total CDS (coding sequences) bp_cds_T Number of 'T' bases in total CDS bp_cds_C Number of 'C' bases in total CDS bp_cds_G Number of 'G' bases in total CDS bp_cds_N Number of 'N' bases in total CDS bp_cds_tot Total bases in total CDS fr_cds_A Frequency of 'A' bases among total CDS bases fr_cds_T Frequency of 'T' bases among total CDS bases fr_cds_C Frequency of 'C' bases among total CDS bases fr_cds_G Frequency of 'G' bases among total CDS bases fr_cds_N Frequency of 'N' bases among total CDS bases GC_cds Percentage of 'G' and 'C' bases in total CDS topo_entropy_cds Topological entropy calculated from total CDS sequences chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS shannon_cds Shannon entropy score for total CDS bp_cds_overlap_tot Number of bases overlapping between CDS on two strands bp_cds_intron_A Number of 'A' bases in total introns between CDS bp_cds_intron_T Number of 'T' bases in total introns between CDS bp_cds_intron_C Number of 'C' bases in total introns between CDS bp_cds_intron_G Number of 'G' bases in total introns between CDS bp_cds_intron_N Number of 'N' bases in total introns between CDS bp_cds_intron_tot Total bases in total introns between CDS fr_cds_intron_A Frequency of 'A' bases in total introns between CDS fr_cds_intron_T Frequency of 'T' bases in total introns between CDS fr_cds_intron_C Frequency of 'C' bases in total introns between CDS fr_cds_intron_G Frequency of 'G' bases in total introns between CDS fr_cds_intron_N Frequency of 'N' bases in total introns between CDS GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS shannon_cds_intron Shannon entropy score for total introns between CDS bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands n_ncRNA_pos Number of ncRNA in the positive strand n_ncRNA_neg Number of ncRNA in the negative strand n_ncRNA_tot Total number of ncRNA in the chromosome bp_ncRNA_A Number of 'A' bases in total ncRNA bp_ncRNA_T bp_ncRNA_T bp_ncRNA_C Number of 'C' bases in total ncRNA bp_ncRNA_G Number of 'G' bases in total ncRNA bp_ncRNA_N Number of 'N' bases in total ncRNA bp_ncRNA_tot Total bases in total ncRNA fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA shannon_ncRNA Shannon entropy score for total ncRNA bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands bp_nc_intron_A Number of 'A' bases in total introns between ncRNA bp_nc_intron_T Number of 'T' bases in total introns between ncRNA bp_nc_intron_C Number of 'C' bases in total introns between ncRNA bp_nc_intron_G Number of 'G' bases in total introns between ncRNA bp_nc_intron_N Number of 'N' bases in total introns between ncRNA bp_nc_intron_tot Total bases in total introns between ncRNA fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA shannon_nc_intron Shannon entropy score for total introns between ncRNA bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands n_tRNA_pos Number of tRNA in the positive strand n_tRNA_neg Number of tRNA in the negative strand n_tRNA_tot Total number of tRNA in the chromosome bp_tRNA_A Number of 'A' bases in total tRNA bp_tRNA_T Number of 'T' bases in total tRNA bp_tRNA_C Number of 'C' bases in total tRNA bp_tRNA_G Number of 'G' bases in total tRNA bp_tRNA_N Number of 'N' bases in total tRNA bp_tRNA_tot Total bases in total tRNA fr_tRNA_A Frequency of 'A' bases among total tRNA bases fr_tRNA_T Frequency of 'T' bases among total tRNA bases fr_tRNA_C Frequency of 'C' bases among total tRNA bases fr_tRNA_G Frequency of 'G' bases among total tRNA bases fr_tRNA_N Frequency of 'N' bases among total tRNA bases GC_tRNA Percentage of 'G' and 'C' bases in total tRNA topo_entropy_tRNA Topological entropy calculated from total tRNA sequences chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA shannon_tRNA Shannon entropy score for total tRNA bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands n_rRNA_pos Number of rRNA in the positive strand n_rRNA_neg Number of rRNA in the negative strand n_rRNA_tot Total number of rRNA in the chromosome bp_rRNA_A Number of 'A' bases in total rRNA bp_rRNA_T Number of 'T' bases in total rRNA bp_rRNA_C Number of 'C' bases in total rRNA bp_rRNA_G Number of 'G' bases in total rRNA bp_rRNA_N Number of 'N' bases in total rRNA bp_rRNA_tot Total bases in total rRNA fr_rRNA_A Frequency of 'A' bases among total rRNA bases fr_rRNA_T Frequency of 'T' bases among total rRNA bases fr_rRNA_C Frequency of 'C' bases among total rRNA bases fr_rRNA_G Frequency of 'G' bases among total rRNA bases fr_rRNA_N Frequency of 'N' bases among total rRNA bases GC_rRNA Percentage of 'G' and 'C' bases in total rRNA topo_entropy_rRNA Topological entropy calculated from total rRNA sequences chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA shannon_rRNA Shannon entropy score for total rRNA bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands ATG ATG AAG AAG GTA GTA ACT ACT GCA GCA GAG GAG GCT GCT ATT ATT TCC TCC TGG TGG AAT AAT GAA GAA TCA TCA ACG ACG AGT AGT AAC AAC TCT TCT GTG GTG TTC TTC TTT TTT CTG CTG GGT GGT CTC CTC GAT GAT CAG CAG ACC ACC CTA CTA TTG TTG TAT TAT GGA GGA ATC ATC CTT CTT GTC GTC ATA ATA ACA ACA GAC GAC CAC CAC CCC CCC TAC TAC GCC GCC AGC AGC CGC CGC AAA AAA GGC GGC TGC TGC GTT GTT GGG GGG AGA AGA TGT TGT CAT CAT TCG TCG GCG GCG TTA TTA CCT CCT AGG AGG CCA CCA TAG TAG CGG CGG CCG CCG CGT CGT CAA CAA TAA TAA TGA TGA CGA CGA
GCF_005870125.1NC_042565NC_042565.1Lonchura striata domestica isolate Mets1 chromosome 1; lonStrDom2; whole genome shotgun sequence.3453696534587432222822552230719511684701148823170.30.30.190.190.010.390.94540.00130.99871.9608724690141416998786185817011101082912044391383452590191590.270.290.20.220.010.430.920.10970.89831.9619620755454410985720444728664887405189271220525890.290.240.230.2500.480.86250.31160.74931.93970120409671343324176233278429673296901418241090.280.320.190.2100.40.89350.1830.84061.936201561222787912877524528185597102654410.290.260.210.2300.450.85480.30590.75721.92796147156715100449148519354182979548616750.290.310.190.20.010.390.90030.12950.88541.943809716210272305394011810.180.230.260.3300.590.89180.26480.77221.95730000000000NANANANANANANANANANA01644819333541898621396417971126721053011057139321113118063120654288923411026107671448111746114792225661861157611701216339832603011857696013385106601069074327124142091049110199103067897123301422448271988310635117067973905915365944892843278514265621150911245139403458533052632855128994671106213231
GCF_005870125.1NC_042566NC_042566.1Lonchura striata domestica isolate Mets1 chromosome 1A; lonStrDom2; whole genome shotgun sequence.21424884214579581417587114213787995809722683090.30.30.20.20.010.390.94620.00210.99791.96265505261076117400521290953778570198616913476680416002010.270.290.210.220.020.430.91830.11480.89431.953528014494218704303323528673730253945331215507690.280.230.230.2500.480.86160.31650.74641.938608536316954394855896766162283371283302035060.270.320.190.210.010.40.89110.18480.84021.9311095851807202470839494285264702449380.280.250.230.2400.470.85910.31150.75431.93305680255808683755883801993170519363850.270.30.20.210.010.420.89350.15760.86471.9345014561799812303610.170.220.270.3400.610.8830.24270.78761.95090000000000NANANANANANANANANANA0122831474140727461107341447599047929838298798469142338802317867858650811911046908484721696946549004926316034754444028302519510553826978215719524010486840977717810617396861047640901421382668528606368561146966537046241640584781877181651036922674275406122939742316375112553
GCF_005870125.1NC_042567NC_042567.1Lonchura striata domestica isolate Mets1 chromosome 2; lonStrDom2; whole genome shotgun sequence.4587963845909443293887222935728316752661522103520.30.30.190.190.010.390.94620.00090.99911.9591800851165122413558246358591427235615726610682835777312180.270.30.20.220.010.420.91830.11530.8941.94981637962266312856795485558525681496120844224156750.290.240.220.2500.470.86140.31570.74711.9364116123724180102931005516911153801520996558639830.280.330.180.20.010.390.89230.18080.84331.923501531442978826588513616976539113038670.280.260.220.2400.460.85570.30380.75861.93310144101914908099135579441643181148213600.280.310.20.20.010.40.89780.14070.87851.93770102333508549596785024380.210.230.240.3200.560.87120.22950.80341.97130000000000NANANANANANANANANANA01941723086674811734162982207014930130551289814731137032241813826478911051135631238416615136951421925307761812955141002488611282683213274857916313124881240288409024165181259311695115899459146981653360532373812954129219930104671780610807106433959669182391296213042154363818703566053464150595659117613893
GCF_005870125.1NC_042568NC_042568.1Lonchura striata domestica isolate Mets1 chromosome 3; lonStrDom2; whole genome shotgun sequence.3394145833834595221561552206558012330021132307900.30.30.20.190.010.390.94650.00360.99641.962709722143116952854187119521095012912127393621702593640300.270.290.20.220.010.430.9190.11740.8921.95681370256657211386220525133265251795658554822264600.290.240.220.2500.480.86180.31020.75071.93950125528461410876078552428789090434412437403500.270.320.190.210.010.390.89120.18970.83571.928301261302566417161698458864809202198470.290.250.220.2400.470.85480.3120.75261.9254842129333713432958376768665442658443674360.280.310.20.20.010.40.90080.14080.8791.94070751217319123828808900.190.220.270.3200.590.87720.20110.82371.96480000000000NANANANANANANANANANA017538209206111105471501920261140111161311725143891211220778125544221101421195511717153551248812708239566880123051366923000101426562127047635152091122611834793480161484611709109301067184621366615214561321699120991238191829391166649876100483414601874451260511807143403552607559163239141075200113393544
GCF_005870125.1NC_042569NC_042569.1Lonchura striata domestica isolate Mets1 chromosome 4; lonStrDom2; whole genome shotgun sequence.21440149217166111388393814059291875353719753420.30.30.190.20.010.390.94580.01270.98741.9602489450939103457641143101167209927465452320502362837210.270.290.20.220.010.420.91840.11620.89251.952618154371375746386439316875337395360396014011050.280.230.230.2600.480.86160.31140.74971.935807351129829758447249115301652265823259410990.270.320.190.210.010.40.88960.19610.83131.92710116691854808346371342773545101641820.290.260.220.2400.460.85710.30460.75661.93830829798860351510626533594897027433390.290.310.190.200.40.9010.13540.8811.94590000000000NANANANANANANANANANA0000000000NANANANANANANANANANA01040112870376465989517126268767691076728967745412605779732146256755570751014278017797150904243784682951454867623751765245239517710769835037489694037630696873565249899297263734133037859793454346396102646409618323424067451778847617908122174271418921128686312671302455
GCF_005870125.1NC_042570NC_042570.1Lonchura striata domestica isolate Mets1 chromosome 4A; lonStrDom2; whole genome shotgun sequence.5532430552133643599504340383261711200158100.280.280.220.220.010.430.94410.00330.99681.98252041984022871562320831222707462514385105325109703300.240.270.230.250.010.490.91460.12520.88471.971557502165167332138012111712147533151717175489910.260.210.250.2700.530.85770.31880.74561.9347017290521979068136866015300296359166704000.240.290.220.2400.460.88310.2140.81671.94320362763166601718713297144310615750.260.240.230.2600.490.8530.28910.76591.942803773934049432502222696522268313248930.260.280.210.230.020.440.89410.17570.84761.938301122739414901560.180.240.260.3200.580.86080.36830.70341.94980000000000NANANANANANANANANANA040054996934222438615671346819543575367921283904283015782091301124914372317622037023166335362793627231121081239112183900319921182146117732263314308040162176453445051932385939283398163332563552207019291093202311113370355741145412189203583326897512560994
GCF_005870125.1NC_042571NC_042571.1Lonchura striata domestica isolate Mets1 chromosome 5; lonStrDom2; whole genome shotgun sequence.18051955182807621244935012609143610455620016650.290.290.20.20.010.40.94440.01270.98741.97025725371109102891751140067070263037785439215190367167770.260.280.220.230.010.450.91770.11860.89061.962830167465433898456560371469417323441246016865980.280.230.240.2600.50.86020.32080.7441.937607076799804076247311915307527154438253107170.260.310.20.2200.420.88810.20260.82611.9356084891734734146249338623515401626060.290.250.220.2300.460.85890.29320.76381.93366102977310468526365866457392193433808840.290.310.190.20.010.390.90050.13930.87891.941602468010111615004470.180.230.260.3400.60.88820.26650.76681.95820000000000NANANANANANANANANANA0128141545041607684116971696711033767896101099283451508790243567730889148616122319512830519556500510275102721825984204643847150661169288988100621650821077695198704964664201138711870493515019940696516066804312017721172412771476246569762962711431221554724861260910111317480922856
GCF_005870125.1NC_042572NC_042572.1Lonchura striata domestica isolate Mets1 chromosome 6; lonStrDom2; whole genome shotgun sequence.103474341029207174394427370394315730357650710.290.290.210.210.010.410.9450.00730.99271.97562853035886187232687651243681954866841130600224293800.260.280.220.240.010.450.91950.11510.89311.964823324226050225267320477923395924507419364860.280.220.240.2600.50.86150.31250.74911.93880448530150927553097177348715793439162558290.260.310.20.2200.430.88910.19860.82871.9410393574143871381611000117341509380.290.250.220.2400.460.85620.34520.73331.91630401129419184271382285972767113853380.280.30.210.210.010.420.90230.12360.8891.957501122333455301540.150.210.290.3400.640.88980.26930.77191.92980000000000NANANANANANANANANANA070448597221643026720879261184175517064364535791951162175399850804542697051714535106062789560752569797481725704681283464414971443934852778619051064892547535366515680326708335550856533296451566663971399915462829257156435467671312602942272414145569182246061608
GCF_005870125.1NC_042573NC_042573.1Lonchura striata domestica isolate Mets1 chromosome 7; lonStrDom2; whole genome shotgun sequence.111554441118382678103717801546591815385430020.290.290.20.20.020.410.9450.00180.99821.96882892895786391300706134944144504891331264332230227620.260.280.210.230.010.450.91940.11730.89171.960274142292464752762512272722478552642342710156390.280.230.230.2600.490.86020.31430.74871.939704636437523891931272503497602218060167182680.270.320.20.220.010.410.88910.19370.83291.93230492978227102261715702165590775880.280.250.230.2400.470.85930.28860.76861.9317027319527785217937318331835839173210.280.30.20.20.010.410.90.15580.86641.943707714184239270356010490.180.230.260.3400.60.89490.27060.76931.95410000000000NANANANANANANANANANA0793295372599482875559261664249895612678449078550581022354701525252447417545952471113535845777583710597505325405445314671995201485735953278694753365149547838786689738026408967569959133805483874774382444517012730299160945800733914612844283515545870207251271587
GCF_005870125.1NC_042574NC_042574.1Lonchura striata domestica isolate Mets1 chromosome 8; lonStrDom2; whole genome shotgun sequence.8912561880779164888326422474349766309814240.290.280.210.210.010.420.94510.01110.9891.97592883186065191749576078237756924173006178718190799470.260.280.220.230.010.450.91840.11880.89041.963516703219257476235100190430226238237229178890140.270.220.240.2600.510.860.31440.74761.936603590597408421625906172885004151969133024030.260.310.20.220.010.430.88660.20510.82371.9377061551162933628032214182191801007040.280.260.220.2400.460.85870.28270.76991.941983439638454065278970291029530914690110.280.310.20.20.010.40.89760.16020.86211.940202133752607702260.170.230.260.3400.60.85780.28980.74981.94980000000000NANANANANANANANANANA065277884201139666414811860443829508562234056713147882331389844144330656147584157101082891534245899838479421334112242463214466404632122518586848384675551632446361693226247330541554793127468664563668369016022862234454485493633710693009298914295276158243331694
GCF_005870125.1NC_042575NC_042575.1Lonchura striata domestica isolate Mets1 chromosome 9; lonStrDom2; whole genome shotgun sequence.7183066728221254631835535023495545259590290.280.280.210.210.020.420.9450.01340.98671.97592582435013864336429956929387633238882189611145311610.250.280.220.240.010.460.91660.12230.88761.96590210209419183848152723185596191199287133940.270.220.240.2700.510.86040.31050.75031.94050264212430009371952215216872013250798965030.250.30.210.230.010.440.88610.20260.82571.94120383371176271763913231136500621470.270.260.230.2400.470.86240.26630.78311.9389019987121537114024714909227527073330.280.310.20.2100.410.8990.1390.87971.950702023337344101450.230.260.230.2800.520.86790.17910.83951.98880000000000NANANANANANANANANANA0528962301505313149977146471629564285475931455544383519492778384534665378417734318811229845053887782139591571334918175012397530342797178144844167395044402825557753772264528944334478234538204721288630151359226316314470424150667972525233010393918109732721250
GCF_005870125.1NC_042576NC_042576.1Lonchura striata domestica isolate Mets1 chromosome 10; lonStrDom2; whole genome shotgun sequence.5789857585767244442074489099657796212386310.270.280.210.210.030.420.94570.01080.98921.96982442384823493484387459226627762941194397272133693180.240.270.220.240.030.460.91420.1250.88571.940411833210182392201949161693197184207959467688310.270.220.250.2700.510.85950.31790.74581.93320241449827633021799322201901233044193265750.250.30.210.230.010.440.88230.21440.81761.92520304272178781780614924150910656990.270.250.240.2500.480.85610.29260.76471.93153312820323481221534228132577710917440.280.30.20.210.010.420.90490.13270.88221.9601017811013015318705800.190.220.260.3200.590.89630.24030.78871.96220000000000NANANANANANANANANANA0549469631639336854678068497831984598528833526468414720573286412338645812407233439317222744004284838141381662356819465263408231772777196447184536404147582868570059722621621048914578255939685185319932291529283519184505448153288802840271911574512129636311494
GCF_005870125.1NC_042577NC_042577.1Lonchura striata domestica isolate Mets1 chromosome 11; lonStrDom2; whole genome shotgun sequence.5941402591387244880334463641356736211636840.280.280.210.210.020.420.94570.0050.9951.9765216228444287793231868432229625244370891624108297320.240.260.230.250.010.480.91310.11770.89121.9612448717217935115189712558116781317065806159490.250.210.260.2700.530.85840.29720.75951.9357019360462199614146702016290667412273058680.230.280.230.250.010.480.87880.22460.80981.93160363874216312134317264182020784400.280.240.230.2500.480.85730.30310.75941.93491223824924748915376915892236898021180.270.30.210.2200.420.89950.15020.86651.95370551012916920124407430.170.230.270.3300.60.88230.23530.79231.9590000000000NANANANANANANANANANA043555357118226344276652341372273389740552264419530741905234832562811490833932506763418273852300368563533127526401360408933092516233313963747378235934588233752735135243138784430395219143597384324912408136524411233379339364419597260127171045315180427341053
GCF_005870125.1NC_042578NC_042578.1Lonchura striata domestica isolate Mets1 chromosome 12; lonStrDom2; whole genome shotgun sequence.5806334580736945420154537996265345209590590.280.280.220.220.010.430.94520.00050.99951.98212091883973469092389868626888702996414117454131705160.240.270.230.250.010.480.91460.11990.88911.9671692616916032916222913265617099617631716421990.260.210.250.2700.530.85870.31570.7471.9366024814082838207186866420949609240193756400.240.290.220.2400.470.88190.21690.81561.94280382563124671222710802113970468930.250.230.240.2700.510.84670.31420.75221.9289015128616133911701912493991165636990.260.290.220.230.010.440.890.14970.86981.95030101171919280830.20.230.230.3400.570.8870.2470.78671.97130000000000NANANANANANANANANANA046115797122027064684677242382462387944172558457133341852245535072875531035812677797018523916330271273824139027711605434638012593263114043985396636594426263552505131226143624413417819463750405925382508127421191349374638654629682244823881014321293128971237
GCF_005870125.1NC_042579NC_042579.1Lonchura striata domestica isolate Mets1 chromosome 13; lonStrDom2; whole genome shotgun sequence.4995381499494641184874107163413685186296620.270.270.220.220.020.440.94470.00140.99861.98061921953872656219296596221697252394549159168103456230.230.260.230.250.020.490.91530.11680.89191.9575454163175338140715112700154334159716175674820.260.20.260.2800.530.8570.33590.73431.93130192285421919411537723171167612687574910690.230.280.220.250.010.470.88240.21720.81571.9351027174496829570813390930364780.270.240.240.2600.490.85330.29950.75921.94020613022457515020016147368457492230.250.280.210.230.020.440.89440.17290.85021.93880000000000NANANANANANANANANANA0000000000NANANANANANANANANANA0388950149952215395864893750187136303829202838902960175920643159266447443083211070971686363629446377320911062318118338593146216222171151346038533059432722294734482921983671401735941562342336922047198613392322104133533759410351424272342982281566125061141
GCF_005870125.1NC_042580NC_042580.1Lonchura striata domestica isolate Mets1 chromosome 14; lonStrDom2; whole genome shotgun sequence.4456409453616137464963788303238668167660370.270.270.220.230.010.450.94050.01440.98571.98632192314502788813311996223302762563243135011109373050.240.260.240.260.010.490.91320.1190.89011.96414261191194385178257147714193451196822607163040.260.210.260.2700.530.85950.30340.75441.93630209301124108011691685188948311689382018730.240.290.220.240.010.470.87940.22020.81311.9348020264673587479646670470283500.250.240.240.2700.510.85950.26840.78031.939301385831393421013659912053354837450.250.290.220.230.010.450.88440.17130.85481.9439022448678610603070.160.220.280.3400.630.87610.26280.77671.93770000000000NANANANANANANANANANA0466062791236282348787495491725734543511025445214361820092615390533505510420130879232209048123450826440201531289415734997397729802708145841834260396352322761590056832669495349404673232940484742293128331505261714924373427250577172895289112003787113334901360
GCF_005870125.1NC_042581NC_042581.1Lonchura striata domestica isolate Mets1 chromosome 15; lonStrDom2; whole genome shotgun sequence.3766529372962333004173273453252840143228620.260.260.230.230.020.460.94230.0090.9911.986920420140521984382492888190028621062386649687643460.240.260.240.260.010.490.91390.11930.88981.9703017617935516202912967917629918220796502230.260.210.260.2800.540.85680.31840.74561.9332016201011888480136037015213325931764496000.240.290.220.250.010.470.87980.22380.811.9415025164110923108179934101790418530.250.230.240.2700.510.86370.24690.7991.937904768351526398414186514751823900.250.280.220.230.010.460.89330.18240.84461.9465014565839411903610.180.230.260.3300.590.88320.24580.78521.96090000000000NANANANANANANANANANA044615850119624794716719844232258420045462345478231041837237732602810501434252537838319524189323676563650135626401374469436082617246212703753378136135004231652705375250644504508401219753864417823902555134124661221399941014820607294126881142343085629561456
GCF_005870125.1NC_042582NC_042582.1Lonchura striata domestica isolate Mets1 chromosome 17; lonStrDom2; whole genome shotgun sequence.2906078290423827491092758293234970115526880.250.250.240.240.020.480.94020.0020.9981.9879188150338178274820105191701326186328811162874695090.230.250.250.260.010.510.91250.11510.89381.971213754152126278122123972821385281418551634999510.250.20.270.2900.550.85610.32160.74391.93210133863215577611260474139631210319456563730.230.280.230.260.010.490.88040.22050.81241.9472029225159655012560456827222700.260.20.260.2900.540.84640.36390.7171.91280510224904045651448684801910610.240.250.250.2600.520.87980.17460.85171.949701123236334501460.210.250.220.3100.530.82050.24050.79261.98220000000000NANANANANANANANANANA033374404721191438385503354415093228340015723449243815651810260322463888254017146583174833582551621130088981851924374327261934197980129662967286138721843427841561801317535563193141633093088186218301008179377835103332376133421532109845256450222651062
GCF_005870125.1NC_042583NC_042583.1Lonchura striata domestica isolate Mets1 chromosome 18; lonStrDom2; whole genome shotgun sequence.3010221306447527208542765732293537118548190.250.260.230.230.020.460.94290.01710.9831.9839198160358168743018881001539096168679112320469246210.230.250.250.270.010.510.91080.12110.88861.9617016614030613770110980215648516156355655560.250.20.260.2800.550.85640.32260.74171.9326012682701465233110223812228859169951503250.230.270.240.260.010.490.87470.23260.80451.9348018153346254431488150060189430.240.220.250.2900.540.84910.28170.7721.9308014657151361281614708199575160.220.260.230.2900.510.85570.30530.76321.9083090913015016121206530.20.230.250.3200.570.88750.25520.77841.96090000000000NANANANANANANANANANA03723537590319994023665940071779355139791730401126911655185229852365462532241999789916273764262867023295104521221098393331522087225598132583646329943592161513346352383354042023654145035813399198720851221223189335013636406448226422242947277366924401248
GCF_005870125.1NC_042584NC_042584.1Lonchura striata domestica isolate Mets1 chromosome 19; lonStrDom2; whole genome shotgun sequence.2889524294656826173432660272229439113431460.250.260.230.230.020.470.94030.01790.98231.9866187159346191592321807351733813191266411136778545020.230.260.240.260.010.50.91120.11870.89031.96881587167140307127804103424147740151029375300340.250.20.260.2800.540.85650.31540.74731.93460151852417682371336887149065810715762214630.230.280.230.250.010.480.87940.230.80531.9426017193667127094577868040263880.250.230.240.2800.510.85070.30410.76161.922803274933405253872581515351188910.250.280.210.220.030.430.8790.22830.81181.90470101111620240710.150.230.280.3400.620.8870.27610.76041.94510000000000NANANANANANANANANANA034944575841190937885953371516123385379516653551253215701787262621804380287017947503159336972437609931079981943965382129681993202093330963217315840771869482045412159321138033615144033183318200120341205211882633383438402341323772289936276958025021069
GCF_005870125.1NC_042585NC_042585.1Lonchura striata domestica isolate Mets1 chromosome 20; lonStrDom2; whole genome shotgun sequence.3940780398303234651503483354279413151517290.260.260.230.230.020.460.94310.0080.99211.986418020338319919192220420176531919361869009480039380.230.260.240.260.010.50.91430.11850.89071.97272315517432913511810733514852615092635419080.260.210.260.2800.540.85720.32160.74351.9354013932891597911118751413222146301955639470.230.280.230.250.010.480.88220.21820.81431.9503015254078517502665872020292130.270.230.230.2600.490.85450.33050.74141.93720107935112832932729456048334134320.240.280.230.230.010.470.88650.19050.83891.951602021835434801440.120.240.30.3300.630.86390.37750.70481.91820000000000NANANANANANANANANANA03799492898821144052577636341777357138181886365828521593206327662334423428721975698615383594248559703227108621201041378829952103207411153386325931604113200144744649190534803777362314893220375620332046121520419313441371042735192254219085928386942568995
GCF_005870125.1NC_042586NC_042586.1Lonchura striata domestica isolate Mets1 chromosome 21; lonStrDom2; whole genome shotgun sequence.198651119914891883042187926858950583298150.240.240.230.230.070.450.94050.00230.99771.9563141139280127372214318171215758133151032444455772510.230.250.240.250.040.490.90890.12340.88711.9511161162329162175775114834115684103979240.240.20.270.2900.560.8550.31060.75161.92740912637105402183479892879825951539897690.230.270.230.250.020.480.87360.24550.79591.92021153669076751644865650266710.250.220.250.2800.530.85340.33630.73581.928103712140234307603319173081486140.240.260.220.250.020.470.87260.2220.8141.92350101121521260740.160.20.280.3500.640.8870.21750.80381.93820000000000NANANANANANANANANANA025063261616140428874311285211412721292711512311181714781344195716403250217813075545120526481684449024716671348633291420921391149059820652396235533861419399633661855208431382823980254824071489137897419905642540260030372872045208185718684271779933
GCF_005870125.1NC_042587NC_042587.1Lonchura striata domestica isolate Mets1 chromosome 22; lonStrDom2; whole genome shotgun sequence.111752611390711214408122196193623456292000.20.20.220.220.170.430.93670.01260.98751.88521028819055741562705063517467702242708429237450.180.20.250.260.110.510.89050.14720.86791.863611407888016852592427507823777661852513250.220.180.30.300.60.84610.32750.7411.9046041513348272844923648686434735621813170.180.230.250.270.060.530.84760.30930.7531.843074112066183124062253085560.240.20.290.2800.570.83860.34760.73631.912502736300430633301456125600.210.250.270.260.010.530.87120.26730.78121.93470101101721230710.140.240.30.3200.620.8870.30470.75061.93870000000000NANANANANANANANANANA012561941269679175829941753511178518285401161962111066912818622059127462535468231665920273017893525842911680141066691522711621680150627469092802230716729542544182050820751251787780842161821116441806180211317951839570939146897615
GCF_005870125.1NC_042588NC_042588.1Lonchura striata domestica isolate Mets1 chromosome 23; lonStrDom2; whole genome shotgun sequence.168690016816511801851178607947461574310960.230.230.240.240.060.480.93820.0060.99411.960713212625883973894652190888199076620413338900390.210.230.250.280.020.530.9040.13250.87961.95221403115108223806786214010489110528033529920.240.180.280.300.580.85060.34420.72951.9139055105064442257968163876513814625520640.20.260.250.270.020.520.86640.26470.78251.9199016153139853992407442430162940.220.210.290.2800.560.85190.33080.73591.92830153141649216749165771565666970.220.250.260.2700.530.88110.1960.82911.96430000000000NANANANANANANANANANA0000000000NANANANANANANANANANA020853109451107924624386226880827182520826200916491372106817991297280619649334603104323571502426423065601060449261920439821310428180323312039346613313684321016661909310023167492669199511071058110318213902113242228412002021216760514952331325744
GCF_005870125.1NC_042589NC_042589.1Lonchura striata domestica isolate Mets1 chromosome 24; lonStrDom2; whole genome shotgun sequence.186402718548771838371183714731538677098080.240.240.240.240.040.480.93990.00280.99721.97684108192101650711390321036945111846312736344383100.210.230.250.270.030.520.90630.12020.89011.95011015739516864706525128815185295272906910.230.190.290.2900.580.85470.3230.7431.9259070556980686570111376005611973530933380.210.260.250.270.020.520.87150.25060.79171.926909101947965094421144350185360.260.230.240.2800.520.85830.30680.7611.93890121831304610486120041216489350.240.290.20.250.020.450.87410.29180.77721.91540000000000NANANANANANANANANANA0000000000NANANANANANANANANANA016742122339109523583067207561822082345640144316651246952139512082332148873238218542042101732552070472842362208915719091140313177916651722283210242816270014431226241521546252119168891995977115132772007206424511661631157857312322031300773
GCF_005870125.1NC_042590NC_042590.1Lonchura striata domestica isolate Mets1 chromosome 25; lonStrDom2; whole genome shotgun sequence.66051865546587194085985760213836499180.180.180.240.240.160.470.92620.01080.98921.87613615829438759643627555445857792636081723170720.160.190.290.290.070.580.87350.18050.84321.873617691261312576364652955109576108775793350310.20.160.320.3200.640.84210.3380.73371.8845024182328755631917733457230251914856470.170.210.280.290.060.570.8220.40020.69371.82180715221622149426402515082710.20.170.310.3300.630.82210.35920.72751.87020130161612618107204151819694830.160.220.30.320.010.620.8480.36470.71751.88101123027395001460.210.180.270.3400.610.88390.28210.75591.94990000000000NANANANANANANANANANA0159322692247842134407623064902917251544113321272166170413701104276516795734591104420971095364124283815882542384173169112941691303213019424181118241233266265397738022948485336114029638491282259916920722482237096292029957741066981071918
GCF_005870125.1NC_042591NC_042591.1Lonchura striata domestica isolate Mets1 chromosome 26; lonStrDom2; whole genome shotgun sequence.161630616059051780606177027537595871490500.230.220.250.250.050.50.93780.00610.99391.96714713928695484410645761066270114182618425144117670.210.230.250.270.030.530.90350.12730.88391.953701311222538882373461122474121502454063050.230.190.290.300.580.85450.32250.74361.9236067178677164271895477748914017630800470.20.250.260.270.020.530.86720.25990.78661.9219010162669997060654767350273410.250.220.260.2700.530.85980.27410.77541.94760209502105420082207512415852520.230.250.250.260.010.510.87210.2720.7781.942202134250567002180.190.230.260.3200.580.90060.19490.82571.97220000000000NANANANANANANANANANA02561338645012992736498528259183130296380519471791161512692213147036212504102060221187287615494714279154811714582693261010671626350203326982372401415824326372020211724340629048223181211613671296117419393602583283331112172361224677315632461688888
GCF_005870125.1NC_042592NC_042592.1Lonchura striata domestica isolate Mets1 chromosome 27; lonStrDom2; whole genome shotgun sequence.128307212648761434194143553190974663274190.20.20.230.230.140.450.93840.00760.99241.902145176321839801921214955863101044051353642408540.190.210.260.270.070.530.8930.14910.8671.891414341301572879205473961131010129801234268490.230.180.290.300.590.84890.3350.73521.9077062720371052467804272628848873432307910.180.230.260.280.040.540.85120.29860.75941.8579057121206122616971840059690.210.170.30.3300.620.83450.33390.74671.8846079778293823288971170345690.190.220.280.30.010.580.84340.31720.75071.90040281014716618122807220.20.230.250.3200.570.88920.17440.84291.97780000000000NANANANANANANANANANA02481347144812872820533129409663265290195221621752158612422249151235562431104757981347301915184705297658710665373001260811001733444201429732409465817144733403126471821414930598223376212313401210131725433592420291229461982802282477916982611563994
GCF_005870125.1NC_042593NC_042593.1Lonchura striata domestica isolate Mets1 chromosome 28; lonStrDom2; whole genome shotgun sequence.136717213503221556861153591261089664211630.210.210.240.240.10.480.94050.0130.98711.9375146162308819756929066941523101479127039939755350.190.210.260.280.060.540.89680.13480.87811.910401301422729479074746134070133845604375110.230.180.290.300.590.85050.33250.73711.9106055101265342361267766672822771527115550.190.240.260.280.030.540.85620.28650.76831.886709152441394122402041570164380.230.230.260.2800.540.85220.3480.72461.92690128601456713743144654228598630.210.270.240.260.020.50.86350.33580.74751.901202245668769202920.190.230.260.3100.580.88060.2080.81851.97060000000000NANANANANANANANANANA02474344148513633081529731978633044323989622221897198613502198152635602168943596612573022174048083016725105349131872377122116934162153290925894504157449303949249118414180293282335082265128514601396265138529933047314718029152824958183324716801172
GCF_005870125.1NC_042594NC_042594.1Lonchura striata domestica isolate Mets1 chromosome 29; lonStrDom2; whole genome shotgun sequence.54887055319774199874756679024533818760.160.160.220.220.230.440.92630.00770.99241.81451128920132644536511447339049158039660120531300.170.180.270.280.10.550.87850.17190.8511.83816401037617952071416518719086883512678460.20.160.310.3200.630.84350.34580.72781.8882021164125282229091830591735434614156440.160.20.290.290.060.580.82590.390.70011.8093041014100694714491333047350.20.170.320.3100.620.82240.41460.69281.8486029023464492547997192232820.140.190.290.30.070.590.82290.38450.70941.74440011151921270820.180.230.260.3300.590.89870.24260.78361.96810000000000NANANANANANANANANANA01283197720365116873525185038418441818381961948137954214197722285155147040258571787785279321152694941941899160453010911781023195816533175107736482524211881230051812419277211016256641014217499143416591667622225234165989393793738
GCF_005870125.1NC_042595NC_042595.1Lonchura striata domestica isolate Mets1 chromosome Z; lonStrDom2; whole genome shotgun sequence.221497532213876314098309141025221099978735893250.30.30.190.190.010.380.94560.00040.99961.9562417428845100572361106207263606827005147359648348447850.280.30.20.220.010.420.92030.11530.89331.9547749073313566873733053093322985753259642913072050.290.240.220.2500.470.86330.30520.75321.94107333224820053645524455040379219547253461310.280.330.180.200.390.8930.18070.84231.9285078611393765336404260292714101272270.290.260.220.2300.450.85750.29040.76731.936103594943645432348042350464465612385430.280.30.20.20.020.40.89730.14260.87471.92860101141819210720.190.250.260.2900.560.90990.1750.84131.98510000000000NANANANANANANANANANA0107811203939176678899911259811072546405841676721241279762202648070597211902272597700136064093683381741319658223825751849758881661470064732505793486642626155015241737685482797128046382725555435225105596338623017412941450169826585841823443058302017438344333271631992
NANC_029475NC_029475.1Lonchura striata mitochondrion; complete genome.53293901527923040168130.320.230.310.1400.450.92510.5470.58421.93212893747513741464423850155210.30.270.240.1900.430.87930.45170.65761.9239268192302195224481137078390.280.260.30.1500.460.87490.6620.54081.884310000000NANANANANANANANANANA0000000000NANANANANANANANANANA0000000NANANANANANANANANANA014822481438310327015560.310.280.20.2100.410.8780.34030.72141.9412202844534667528025730.320.210.260.2100.470.91340.33720.71521.97130240672365112550726145469278320141303425166712378237172383147464388103445554531053165739163028271075391418015226156234