GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_011074885.1	NC_054682	NC_054682.1	Brettanomyces bruxellensis chromosome 1; complete sequence.	81804	79830	50188	54561	266383	0.31	0.3	0.19	0.2	0.39	0.6033	0.054	0.9479	1.9663	50	44	94	38737	35444	24868	30201	129250	0.3	0.27	0.19	0.23	0.43	0.91	0.2051	0.8209	1.9666	48	42	90	37841	34610	24386	29622	126459	0.31	0.27	0.19	0.24	0.42	0.9044	0.2307	0.8032	1.9603	824	758	403	494	2479	0.32	0.32	0.16	0.2	0.36	0.8724	0.3121	0.7424	1.9098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	2	4	72	76	79	85	312	0.23	0.24	0.25	0.27	0.53	0.9001	0.1451	0.8676	1.9904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	988	1472	236	605	947	1269	707	1268	483	485	1180	1290	808	412	649	827	770	768	837	1182	259	832	400	1628	821	430	384	1101	776	996	705	1034	441	682	879	828	333	176	694	618	437	178	1420	513	355	1102	275	840	337	521	550	332	630	461	384	715	57	231	322	264	619	71	139	195
GCF_011074885.1	NC_054683	NC_054683.1	Brettanomyces bruxellensis chromosome 2; complete sequence.	136465	136016	95543	98610	466634	0.29	0.29	0.2	0.21	0.42	0.6029	0.0174	0.9828	1.9795	90	85	175	80141	68588	57342	68626	274697	0.3	0.25	0.2	0.25	0.45	0.9075	0.2421	0.7938	1.9662	87	84	171	78125	66161	56186	67187	267659	0.31	0.25	0.2	0.25	0.44	0.8992	0.2827	0.771	1.9531	1963	2350	1082	1355	6750	0.3	0.33	0.18	0.2	0.38	0.8534	0.4296	0.6745	1.8844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	1	4	53	77	74	84	288	0.18	0.27	0.26	0.29	0.55	0.8958	0.246	0.7875	1.9781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2061	3374	488	1177	2092	2942	1292	2045	1140	1049	2206	2657	1435	1055	1257	1961	1408	1931	1648	2093	818	1500	1201	3121	2103	919	718	2198	1247	1873	1558	1965	914	1203	1665	1950	900	528	1550	1345	1251	545	2708	1406	829	1894	837	1719	559	946	1437	892	1048	914	1104	1622	81	914	985	578	1389	126	322	505
GCF_011074885.1	NC_054684	NC_054684.1	Brettanomyces bruxellensis chromosome 3; complete sequence.	185400	185220	110035	112037	592692	0.31	0.31	0.19	0.19	0.37	0.6532	0.0095	0.9906	1.9542	112	108	220	106240	96299	60757	73011	336307	0.31	0.28	0.18	0.22	0.4	0.9077	0.2154	0.8143	1.9547	107	103	210	103936	93651	59354	71484	328425	0.32	0.28	0.18	0.22	0.4	0.9014	0.2455	0.7961	1.947	2132	2435	1202	1287	7056	0.33	0.31	0.17	0.19	0.36	0.8569	0.3172	0.7457	1.8992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	5	10	172	213	201	240	826	0.21	0.26	0.24	0.29	0.53	0.8961	0.2147	0.8119	1.982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2532	3992	706	1869	2277	2837	2037	3579	1279	1136	3729	4071	2347	926	1663	2069	2382	1503	1682	3231	669	2219	835	4832	1781	1049	1073	2834	2417	2165	1450	2793	1023	2096	2332	1685	649	445	1474	1195	1074	279	4108	939	695	2980	623	2281	910	1541	1214	620	2187	1331	1090	1950	97	423	610	716	2094	175	182	474
GCF_011074885.1	NC_054685	NC_054685.1	Brettanomyces bruxellensis chromosome 4; complete sequence.	251790	252186	164515	165764	834255	0.3	0.3	0.2	0.2	0.4	0.6026	0.0046	0.9954	1.9685	181	160	341	156460	137823	99850	118065	512198	0.31	0.27	0.19	0.23	0.42	0.9083	0.2081	0.8197	1.9637	176	157	333	153965	135293	98512	116527	504297	0.31	0.27	0.19	0.23	0.42	0.9032	0.2294	0.8073	1.9575	2373	2369	1209	1361	7312	0.32	0.32	0.17	0.19	0.36	0.8564	0.2553	0.7871	1.8992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	3	8	122	161	129	177	589	0.21	0.27	0.22	0.3	0.52	0.886	0.3242	0.726	1.9715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3728	6410	1039	2627	3807	5002	2940	4869	2153	1773	5173	5477	3422	1621	2471	3311	3376	2944	2891	4323	1270	3141	1716	6756	3488	1680	1465	4424	3100	3341	2642	4023	1762	2699	3374	3203	1486	751	2480	2278	1905	678	5789	1966	1207	4005	1114	3336	1183	2099	2261	1196	2619	1783	1732	2950	130	1016	1323	1113	2874	234	314	821
GCF_011074885.1	NC_054686	NC_054686.1	Brettanomyces bruxellensis chromosome 5; complete sequence.	360230	359077	236712	236274	1192293	0.3	0.3	0.2	0.2	0.4	0.6051	0.0025	0.9975	1.969	248	242	490	246910	216359	155148	182620	801037	0.31	0.27	0.19	0.23	0.42	0.9091	0.2082	0.8194	1.9631	246	240	486	243406	212563	153315	180488	789772	0.31	0.27	0.19	0.23	0.42	0.906	0.2302	0.8074	1.9557	3351	3680	1726	2002	10759	0.31	0.33	0.16	0.19	0.35	0.8526	0.3579	0.7182	1.89	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	1	3	40	52	59	64	215	0.19	0.24	0.27	0.3	0.57	0.8948	0.1712	0.8459	1.9786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5836	10504	1505	3976	5822	8197	4525	7662	3398	2715	7713	8764	5326	2550	3788	5570	5194	4309	4774	6724	1821	5095	2661	10572	5335	2849	2494	7044	4849	5229	4459	6061	2756	4644	5215	4861	2238	1198	4263	3569	2787	775	8735	2858	1923	6563	1558	5691	1828	3531	3369	1511	4042	3001	2876	4798	194	1318	1910	1601	4272	343	535	1145
GCF_011074885.1	NC_054687	NC_054687.1	Brettanomyces bruxellensis chromosome 6; complete sequence.	411636	409169	285952	284004	1390761	0.3	0.29	0.21	0.2	0.41	0.5819	0.0064	0.9936	1.9764	284	301	585	273064	231411	182082	216507	903064	0.31	0.26	0.2	0.24	0.43	0.9083	0.2333	0.8011	1.9633	280	296	576	269276	227339	179935	214143	890693	0.31	0.26	0.19	0.24	0.43	0.9031	0.2553	0.7884	1.9567	3651	3901	1976	2158	11686	0.31	0.32	0.18	0.2	0.38	0.8515	0.3641	0.7167	1.886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	5	9	137	171	171	206	685	0.2	0.25	0.25	0.3	0.55	0.8822	0.2145	0.8126	1.9788	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6507	12126	1638	4330	6685	9958	4916	7631	3883	3101	8072	9588	5375	3008	4221	6504	5271	5899	5243	6737	2442	5250	3443	11459	6486	3089	2511	7641	5067	6000	4978	6556	3119	4596	5620	6154	2827	1647	4867	4319	3584	1429	9724	3803	2416	6822	2251	5911	1901	3594	4235	2474	3816	3201	3162	5254	250	2287	2716	1869	4941	418	635	1398
GCF_011074885.1	NC_054688	NC_054688.1	Brettanomyces bruxellensis chromosome 7; complete sequence.	485252	483424	329126	327310	1625112	0.3	0.3	0.2	0.2	0.4	0.6029	0.0047	0.9954	1.9732	302	334	636	302446	260305	199221	239101	1001073	0.31	0.26	0.19	0.24	0.43	0.9085	0.2381	0.7966	1.9636	293	330	623	297024	254669	196328	235766	983787	0.31	0.26	0.19	0.24	0.43	0.9038	0.2602	0.7842	1.9563	5211	5349	2650	3028	16238	0.31	0.33	0.18	0.18	0.36	0.8518	0.3602	0.7162	1.8935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9	4	13	211	287	243	307	1048	0.2	0.28	0.23	0.29	0.52	0.8873	0.3013	0.7441	1.9709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7472	12944	1831	5046	7450	10793	5392	8491	4012	3448	8910	10666	5955	3377	4899	7016	5824	6395	5921	7761	2684	5977	3825	12584	7153	3357	2742	8507	5476	6825	5557	7655	3512	4997	6230	6445	3076	1724	5579	4660	4006	1480	10861	3932	2484	8001	2482	6893	2234	3847	4639	2660	4277	3520	3494	5735	249	2309	2893	1937	5137	425	684	1538
GCF_011074885.1	NC_054689	NC_054689.1	Brettanomyces bruxellensis chromosome 8; complete sequence.	880938	882029	583917	589525	2936409	0.3	0.3	0.2	0.2	0.4	0.6319	0.0054	0.9946	1.9707	649	591	1240	588469	503898	374074	442239	1908680	0.31	0.27	0.19	0.23	0.42	0.9083	0.2189	0.8106	1.9609	645	577	1222	579298	493923	368984	436821	1879026	0.31	0.26	0.19	0.23	0.42	0.9024	0.2416	0.7971	1.9548	8911	9647	4754	5012	28324	0.31	0.32	0.18	0.19	0.37	0.8504	0.3526	0.7281	1.8833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	14	18	260	328	336	406	1330	0.2	0.25	0.25	0.31	0.56	0.8912	0.2516	0.7855	1.973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14160	24306	3745	9159	13775	19330	10364	17564	8041	6157	18979	21212	12398	5931	9184	13177	12029	11018	10458	15327	4922	11353	6615	24830	13518	6166	5501	16326	10957	12135	9989	14226	6101	10499	12177	11780	5340	3298	9607	8661	7181	2549	21874	7050	4723	14743	4420	13066	4092	7795	8682	4877	9878	7111	6762	11023	460	4310	5190	3780	11256	902	1307	2914
GCF_011074885.1	NC_054690	NC_054690.1	Brettanomyces bruxellensis chromosome 9; complete sequence.	1167021	1159987	757214	761074	3845296	0.3	0.3	0.2	0.2	0.39	0.5424	0.0056	0.9945	1.9678	771	790	1561	755456	658040	471792	565597	2450885	0.31	0.27	0.19	0.23	0.42	0.9081	0.2198	0.8101	1.9608	755	775	1530	740696	643094	464007	556527	2404324	0.31	0.27	0.19	0.23	0.42	0.9018	0.2477	0.7937	1.9523	13935	13907	7005	8126	42973	0.32	0.32	0.17	0.19	0.36	0.8524	0.3176	0.7472	1.8918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	15	15	30	470	555	545	693	2263	0.21	0.25	0.24	0.31	0.55	0.8909	0.2371	0.7941	1.9764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18611	30291	4748	12338	17501	23897	14039	22872	9731	8481	24800	27373	15528	7550	11672	16113	15590	13444	13482	20847	5889	15185	8052	31898	16629	7807	7072	20813	14498	15598	12440	18391	7978	13442	15536	14363	6591	3855	11995	10688	8636	3192	28124	9002	5884	19582	5527	17013	5682	10147	10287	6087	13257	9083	8754	14015	763	5128	6406	5245	14568	1381	2055	3871