Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_011074865.1 | NC_052374 | NC_052374.1 | Brettanomyces nanus chromosome 1; complete sequence. | 1242485 | 1238852 | 884672 | 893422 | 0 | 4259431 | 0.29 | 0.29 | 0.21 | 0.21 | 0 | 0.42 | 0.9573 | 0.0064 | 0.9936 | 1.9802 | 978 | 983 | 1961 | 952269 | 902275 | 642636 | 733562 | 0 | 3230742 | 0.3 | 0.28 | 0.2 | 0.23 | 0 | 0.43 | 0.9129 | 0.1927 | 0.8325 | 1.9717 | 0 | 958 | 969 | 1927 | 916805 | 864267 | 616862 | 709418 | 0 | 3107352 | 0.3 | 0.28 | 0.19 | 0.24 | 0 | 0.42 | 0.898 | 0.2842 | 0.7824 | 1.9367 | 0 | 33395 | 35903 | 24299 | 22145 | 0 | 115742 | 0.3 | 0.31 | 0.2 | 0.2 | 0 | 0.39 | 0.8577 | 0.3274 | 0.7412 | 1.9224 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 17 | 14 | 31 | 491 | 596 | 560 | 695 | 0 | 2342 | 0.21 | 0.25 | 0.24 | 0.3 | 0 | 0.54 | 0.8935 | 0.2483 | 0.7861 | 1.9777 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 23961 | 38402 | 8358 | 20180 | 15564 | 30664 | 22295 | 29088 | 14347 | 12122 | 26870 | 34198 | 16344 | 9129 | 15428 | 20558 | 25836 | 17610 | 19757 | 24432 | 8418 | 22203 | 11570 | 39641 | 21976 | 12528 | 11336 | 29722 | 19060 | 18931 | 18979 | 23550 | 12088 | 14537 | 14963 | 19165 | 7787 | 6344 | 15664 | 15367 | 10240 | 3162 | 30429 | 9702 | 7498 | 23330 | 5233 | 24117 | 8621 | 14559 | 11319 | 5269 | 16032 | 17039 | 10469 | 14484 | 2385 | 4523 | 6501 | 7820 | 18827 | 3185 | 5143 | 6605 |
GCF_011074865.1 | NC_052375 | NC_052375.1 | Brettanomyces nanus chromosome 2; complete sequence. | 412869 | 417567 | 299080 | 298024 | 0 | 1427540 | 0.29 | 0.29 | 0.21 | 0.21 | 0 | 0.42 | 0.9539 | 0.0074 | 0.9926 | 1.9806 | 349 | 332 | 681 | 308376 | 290284 | 205429 | 239134 | 0 | 1043223 | 0.3 | 0.27 | 0.19 | 0.23 | 0 | 0.43 | 0.9099 | 0.2133 | 0.8174 | 1.9683 | 0 | 337 | 324 | 661 | 297154 | 278530 | 197156 | 231083 | 0 | 1003923 | 0.31 | 0.27 | 0.18 | 0.24 | 0 | 0.42 | 0.8903 | 0.3146 | 0.7628 | 1.9259 | 0 | 10450 | 10830 | 7611 | 7171 | 0 | 36062 | 0.3 | 0.29 | 0.19 | 0.21 | 0 | 0.4 | 0.8473 | 0.3863 | 0.704 | 1.9125 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 11 | 8 | 19 | 300 | 387 | 360 | 436 | 0 | 1483 | 0.2 | 0.26 | 0.24 | 0.29 | 0 | 0.54 | 0.8838 | 0.2596 | 0.7796 | 1.9741 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 7665 | 13062 | 2685 | 6434 | 5046 | 10372 | 6939 | 9233 | 4508 | 3935 | 8615 | 11531 | 4971 | 2938 | 4965 | 6575 | 8016 | 5852 | 6408 | 7846 | 2596 | 6974 | 3781 | 13088 | 7049 | 4215 | 3805 | 9828 | 6540 | 6624 | 6284 | 7441 | 3874 | 4508 | 4678 | 6409 | 2378 | 2087 | 5040 | 4887 | 3118 | 958 | 9772 | 2907 | 2304 | 7697 | 1651 | 7560 | 2956 | 4573 | 3762 | 1655 | 5231 | 5350 | 3162 | 4705 | 721 | 1467 | 2118 | 2630 | 5865 | 943 | 1461 | 2286 |
GCF_011074865.1 | NC_052376 | NC_052376.1 | Brettanomyces nanus chromosome 3; complete sequence. | 326796 | 327976 | 235198 | 237078 | 0 | 1127048 | 0.29 | 0.29 | 0.21 | 0.21 | 0 | 0.42 | 0.954 | 0.0058 | 0.9942 | 1.981 | 291 | 268 | 559 | 253628 | 238710 | 170324 | 197829 | 0 | 860491 | 0.3 | 0.27 | 0.2 | 0.23 | 0 | 0.43 | 0.9103 | 0.2132 | 0.8168 | 1.9697 | 0 | 285 | 263 | 548 | 246293 | 231178 | 165126 | 192918 | 0 | 835515 | 0.3 | 0.27 | 0.18 | 0.24 | 0 | 0.42 | 0.8975 | 0.3048 | 0.7675 | 1.9337 | 0 | 7182 | 7320 | 4998 | 4665 | 0 | 24165 | 0.3 | 0.31 | 0.2 | 0.19 | 0 | 0.39 | 0.8448 | 0.3814 | 0.7052 | 1.9092 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 6 | 5 | 11 | 153 | 212 | 200 | 246 | 0 | 811 | 0.19 | 0.26 | 0.25 | 0.3 | 0 | 0.55 | 0.8887 | 0.2881 | 0.7561 | 1.972 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 6420 | 10575 | 2409 | 5545 | 4264 | 8378 | 6010 | 7580 | 3852 | 3311 | 7171 | 9319 | 4157 | 2591 | 4100 | 5348 | 6815 | 4577 | 5307 | 6364 | 2345 | 6114 | 2954 | 10644 | 6021 | 3487 | 3117 | 8177 | 5290 | 5483 | 5099 | 6025 | 3209 | 3680 | 3937 | 5030 | 1900 | 1764 | 4069 | 4288 | 2610 | 777 | 7973 | 2588 | 1834 | 6728 | 1364 | 6666 | 2314 | 3762 | 3106 | 1340 | 4199 | 4642 | 2751 | 3967 | 657 | 1213 | 1794 | 2151 | 5193 | 871 | 1388 | 1800 |
GCF_011074865.1 | NC_052377 | NC_052377.1 | Brettanomyces nanus chromosome 4; complete sequence. | 969145 | 965940 | 682451 | 685697 | 0 | 3303233 | 0.29 | 0.29 | 0.21 | 0.21 | 0 | 0.41 | 0.9535 | 0.004 | 0.996 | 1.9786 | 788 | 814 | 1602 | 744654 | 705460 | 493675 | 570562 | 0 | 2514351 | 0.3 | 0.28 | 0.2 | 0.23 | 0 | 0.43 | 0.9124 | 0.1903 | 0.8341 | 1.971 | 0 | 774 | 797 | 1571 | 722451 | 681301 | 477818 | 555339 | 0 | 2436909 | 0.3 | 0.28 | 0.18 | 0.23 | 0 | 0.42 | 0.8956 | 0.2974 | 0.7769 | 1.9265 | 0 | 21713 | 23578 | 15301 | 14528 | 0 | 75120 | 0.3 | 0.31 | 0.2 | 0.2 | 0 | 0.39 | 0.856 | 0.3519 | 0.7253 | 1.9139 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 14 | 17 | 31 | 490 | 581 | 556 | 695 | 0 | 2322 | 0.21 | 0.25 | 0.24 | 0.3 | 0 | 0.54 | 0.892 | 0.2321 | 0.7975 | 1.9797 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 19041 | 29897 | 6773 | 15765 | 11934 | 23737 | 17420 | 23291 | 11015 | 9754 | 21579 | 26948 | 13074 | 6818 | 11955 | 15706 | 20028 | 13662 | 15627 | 19419 | 6650 | 17326 | 8755 | 31361 | 16703 | 10021 | 9340 | 23512 | 15504 | 15089 | 15006 | 17837 | 9296 | 11835 | 11534 | 15052 | 5794 | 4955 | 12247 | 11726 | 7726 | 2453 | 24129 | 7679 | 5781 | 18428 | 4000 | 19328 | 6803 | 11392 | 8917 | 4097 | 12817 | 12761 | 8351 | 11335 | 1930 | 3508 | 5036 | 6014 | 14809 | 2549 | 4077 | 5138 |
GCF_011074865.1 | NW_024066106 | NW_024066106.1 | Brettanomyces nanus strain CBS 1945 mitochondrion; complete genome. | 30975 | 26128 | 4597 | 7906 | 0 | 69606 | 0.45 | 0.38 | 0.07 | 0.11 | 0 | 0.18 | 0.8459 | 0.3495 | 0.7125 | 1.6658 | 20 | 0 | 20 | 468 | 552 | 193 | 279 | 0 | 1492 | 0.31 | 0.37 | 0.13 | 0.19 | 0 | 0.32 | 0.857 | 0.2892 | 0.7589 | 1.8781 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 20 | 0 | 20 | 468 | 552 | 193 | 279 | 0 | 1492 | 0.31 | 0.37 | 0.13 | 0.19 | 0 | 0.32 | 0.857 | 0.2892 | 0.7589 | 1.8781 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |