Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GCF_000027005.1 | NC_012963 | NC_012963.1 | Komagataella phaffii GS115 chromosome 1; complete sequence. | 824299 | 823970 | 575655 | 574550 | 14 | 2798488 | 0.29 | 0.29 | 0.21 | 0.21 | 0 | 0.41 | 0.7735 | 0.0012 | 0.9988 | 1.977 | 780 | 758 | 1538 | 699479 | 617303 | 453072 | 479832 | 2 | 2249688 | 0.31 | 0.27 | 0.2 | 0.22 | 0 | 0.42 | 0.9111 | 0.1731 | 0.8475 | 1.9695 | 40 | 780 | 758 | 1538 | 693818 | 611194 | 449553 | 476297 | 2 | 2230864 | 0.31 | 0.27 | 0.2 | 0.22 | 0 | 0.42 | 0.9065 | 0.2016 | 0.83 | 1.9619 | 40 | 5661 | 6109 | 3519 | 3535 | 0 | 18824 | 0.31 | 0.32 | 0.18 | 0.19 | 0 | 0.37 | 0.8455 | 0.3389 | 0.7315 | 1.9074 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 14100 | 24405 | 7975 | 15252 | 10799 | 19637 | 15897 | 21667 | 11635 | 8227 | 20883 | 29535 | 14089 | 5302 | 10699 | 18235 | 17262 | 9588 | 14018 | 19035 | 11462 | 12915 | 6396 | 26242 | 12498 | 9939 | 9268 | 21817 | 12496 | 13740 | 13967 | 12798 | 9661 | 11181 | 11731 | 16138 | 6046 | 5933 | 11898 | 9745 | 7110 | 1775 | 26782 | 5810 | 3713 | 17257 | 4732 | 15843 | 5716 | 9763 | 6223 | 3182 | 13621 | 10852 | 6396 | 12821 | 1047 | 1866 | 3607 | 4702 | 19236 | 1348 | 1774 | 4215 |
GCF_000027005.1 | NC_012964 | NC_012964.1 | Komagataella phaffii GS115 chromosome 2; complete sequence. | 703253 | 709200 | 490718 | 490988 | 3 | 2394162 | 0.29 | 0.3 | 0.2 | 0.21 | 0 | 0.41 | 0.8575 | 0.0045 | 0.9955 | 1.9765 | 667 | 666 | 1333 | 599441 | 532790 | 387970 | 413607 | 2 | 1933810 | 0.31 | 0.27 | 0.2 | 0.22 | 0 | 0.42 | 0.9115 | 0.1654 | 0.8534 | 1.9707 | 0 | 667 | 666 | 1333 | 595391 | 528568 | 385447 | 411111 | 2 | 1920519 | 0.31 | 0.27 | 0.2 | 0.22 | 0 | 0.42 | 0.9059 | 0.1907 | 0.8379 | 1.9632 | 0 | 4050 | 4222 | 2523 | 2496 | 0 | 13291 | 0.31 | 0.31 | 0.19 | 0.19 | 0 | 0.37 | 0.8471 | 0.3219 | 0.7456 | 1.9096 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 12100 | 20841 | 6888 | 12754 | 9769 | 17174 | 13555 | 18681 | 9691 | 7095 | 18296 | 24731 | 11939 | 4608 | 9041 | 15661 | 14378 | 8338 | 12029 | 16984 | 10131 | 11332 | 5711 | 22603 | 10704 | 8412 | 8117 | 18918 | 11097 | 11766 | 11999 | 11277 | 8133 | 9990 | 10244 | 13827 | 5216 | 5114 | 10359 | 8158 | 6219 | 1585 | 22856 | 5169 | 3207 | 14909 | 4089 | 13487 | 5073 | 8538 | 5447 | 2781 | 11556 | 9491 | 5721 | 10557 | 848 | 1677 | 2955 | 3915 | 16351 | 1005 | 1239 | 3751 |
GCF_000027005.1 | NC_012965 | NC_012965.1 | Komagataella phaffii GS115 chromosome 3; complete sequence. | 658475 | 663370 | 461572 | 461150 | 861 | 2245428 | 0.29 | 0.3 | 0.21 | 0.21 | 0 | 0.41 | 0.9536 | 0.0042 | 0.9959 | 1.9769 | 597 | 601 | 1198 | 535798 | 472282 | 349202 | 367854 | 413 | 1725549 | 0.31 | 0.27 | 0.2 | 0.22 | 0 | 0.42 | 0.9122 | 0.1636 | 0.8545 | 1.9709 | 4 | 597 | 601 | 1198 | 531061 | 467188 | 346214 | 364879 | 412 | 1709754 | 0.31 | 0.27 | 0.2 | 0.22 | 0 | 0.42 | 0.9067 | 0.1863 | 0.8394 | 1.9648 | 4 | 4737 | 5094 | 2988 | 2975 | 1 | 15795 | 0.31 | 0.33 | 0.18 | 0.19 | 0 | 0.37 | 0.8451 | 0.3159 | 0.745 | 1.9098 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 10592 | 18747 | 6140 | 11635 | 8446 | 15219 | 12163 | 16565 | 8655 | 6042 | 15946 | 22586 | 10905 | 4163 | 8163 | 14086 | 12850 | 7425 | 10664 | 14788 | 8725 | 10174 | 5101 | 20295 | 9352 | 7692 | 7177 | 16457 | 9816 | 10630 | 10595 | 9927 | 7375 | 8696 | 9209 | 12508 | 4841 | 4713 | 9041 | 7314 | 5410 | 1397 | 20473 | 4618 | 2722 | 12999 | 3556 | 11881 | 4271 | 7654 | 4901 | 2416 | 10114 | 8754 | 4954 | 9908 | 765 | 1466 | 2791 | 3749 | 14177 | 986 | 1100 | 3212 |
GCF_000027005.1 | NC_012966 | NC_012966.1 | Komagataella phaffii GS115 chromosome 4; complete sequence. | 521965 | 520284 | 368327 | 367620 | 99 | 1778295 | 0.29 | 0.29 | 0.21 | 0.21 | 0 | 0.41 | 0.8565 | 0.0026 | 0.9974 | 1.9785 | 499 | 472 | 971 | 422081 | 369823 | 276740 | 293299 | 1 | 1361944 | 0.31 | 0.27 | 0.2 | 0.22 | 0 | 0.42 | 0.9114 | 0.1733 | 0.8472 | 1.9709 | 0 | 499 | 472 | 971 | 419218 | 366795 | 274982 | 291447 | 0 | 1352442 | 0.31 | 0.27 | 0.2 | 0.22 | 0 | 0.42 | 0.905 | 0.1969 | 0.8322 | 1.9645 | 0 | 2863 | 3028 | 1758 | 1852 | 1 | 9502 | 0.3 | 0.31 | 0.19 | 0.19 | 0 | 0.38 | 0.8556 | 0.2817 | 0.7693 | 1.9283 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 8546 | 15241 | 4903 | 9228 | 6816 | 12414 | 9752 | 12914 | 6995 | 4786 | 12566 | 17992 | 8439 | 3342 | 6300 | 11091 | 10255 | 6019 | 8546 | 11096 | 7168 | 8359 | 4049 | 15987 | 7580 | 6287 | 5700 | 13345 | 7493 | 8305 | 8511 | 7634 | 5901 | 6501 | 7189 | 10279 | 3737 | 3672 | 7285 | 6181 | 4270 | 1026 | 15917 | 3558 | 2028 | 10280 | 2814 | 9542 | 3275 | 5832 | 3816 | 1928 | 7941 | 6807 | 3789 | 7689 | 495 | 1151 | 2077 | 2993 | 11332 | 603 | 561 | 2638 |