GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000142805.1	NC_013077	NC_013077.1	Lachancea thermotolerans CBS 6340 chromosome A complete sequence.	181351	181231	162604	162532	0	687718	0.26	0.26	0.24	0.24	0.47	0.9564	0.0006	0.9994	1.9979	172	173	345	130155	113670	115101	115040	473966	0.27	0.23	0.25	0.25	0.5	0.9129	0.1754	0.8465	1.9806	0	164	166	330	129185	112525	113997	113916	469623	0.27	0.23	0.25	0.25	0.5	0.9111	0.1854	0.8404	1.9775	0	721	820	815	760	3116	0.24	0.27	0.27	0.21	0.49	0.8742	0.3426	0.7233	1.9441	1	0	1	29	26	19	24	98	0.3	0.27	0.19	0.24	0.44	0.8809	0.1708	0.8441	1.9837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	7	14	197	276	257	324	1054	0.19	0.26	0.24	0.31	0.55	0.8593	0.3448	0.7242	1.954	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3118	5711	1237	2408	2526	5376	3308	3268	2421	1797	2616	4976	2219	1618	1523	4316	3008	2772	3791	3057	3415	2372	2564	3643	3488	2310	1824	3155	1760	1732	3148	2852	2713	1689	2271	4937	1971	1639	3207	2959	2665	1612	4412	3192	1289	3226	1400	2396	830	1406	2274	2429	1463	2261	1497	2334	109	851	1180	1021	3087	138	154	590
GCF_000142805.1	NC_013078	NC_013078.1	Lachancea thermotolerans CBS 6340 chromosome B complete sequence.	235205	233362	212749	212390	0	893706	0.26	0.26	0.24	0.24	0.48	0.9571	0.0048	0.9952	1.9983	229	231	460	179854	157596	156552	160622	654624	0.27	0.24	0.24	0.25	0.5	0.9141	0.1717	0.8499	1.9807	195	218	217	435	178449	156149	155303	159247	649148	0.27	0.24	0.24	0.25	0.49	0.9127	0.181	0.8455	1.976	4	872	760	658	650	2940	0.29	0.28	0.22	0.21	0.43	0.8873	0.2755	0.774	1.9476	2	0	2	128	178	127	177	610	0.26	0.28	0.19	0.27	0.46	0.8822	0.3724	0.6886	1.9553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9	14	23	324	450	418	510	1702	0.19	0.26	0.24	0.3	0.55	0.8632	0.345	0.7271	1.949	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4595	7547	1617	3149	3634	7451	4395	4505	3301	2464	3762	6977	3077	2322	2189	6069	4002	3885	5271	4517	4748	3597	3264	4951	4775	3190	2463	4535	2383	2671	4511	3893	3417	2551	3017	6822	2571	2224	4388	4001	3735	2262	5958	4496	1781	4358	2121	3306	1159	1997	2943	3493	2077	3075	2035	3071	153	1147	1535	1532	4121	209	216	892
GCF_000142805.1	NC_013079	NC_013079.1	Lachancea thermotolerans CBS 6340 chromosome C complete sequence.	263215	263554	236259	236218	0	999246	0.26	0.26	0.24	0.24	0.47	0.9567	0.0007	0.9993	1.9979	278	248	526	197800	172038	172848	172708	715394	0.27	0.23	0.24	0.25	0.49	0.9136	0.1668	0.8532	1.9823	0	258	236	494	196499	170771	171616	171361	710247	0.28	0.23	0.24	0.25	0.49	0.9135	0.1679	0.8526	1.9823	0	727	579	616	633	2555	0.3	0.25	0.23	0.22	0.45	0.8844	0.2408	0.7938	1.9607	3	2	5	172	182	121	105	580	0.31	0.31	0.2	0.18	0.38	0.8669	0.1975	0.8254	1.9328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17	10	27	389	494	492	607	1982	0.2	0.25	0.25	0.31	0.56	0.8719	0.2948	0.7583	1.9585	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4825	8358	1846	3812	3897	8030	4594	4799	3624	2662	4261	7503	3561	2474	2420	6821	4476	4112	5680	4834	5100	3487	3710	5539	5300	3592	2660	4894	2612	2698	4720	4479	3783	2754	3358	7505	2927	2476	4788	4275	4197	2463	6585	5011	1988	4880	2156	3396	1260	2350	3325	3650	2383	3325	2289	3349	151	1248	1792	1541	4749	202	199	1005
GCF_000142805.1	NC_013080	NC_013080.1	Lachancea thermotolerans CBS 6340 chromosome D complete sequence.	400247	396974	359022	357294	0	1513537	0.26	0.26	0.24	0.24	0.47	0.9605	0.0065	0.9935	1.9979	432	370	802	316851	272531	271558	274667	1135607	0.27	0.24	0.24	0.25	0.49	0.9134	0.1687	0.8518	1.9798	0	405	358	763	314450	269875	269376	272322	1126023	0.28	0.23	0.24	0.25	0.49	0.9105	0.1831	0.8432	1.9759	0	1567	1669	1363	1416	6015	0.27	0.3	0.22	0.21	0.43	0.867	0.2327	0.8027	1.9416	12	1	13	451	527	350	361	1689	0.29	0.31	0.19	0.2	0.39	0.8706	0.2132	0.8183	1.943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	15	11	26	392	477	481	583	1933	0.2	0.25	0.25	0.3	0.55	0.8672	0.2915	0.7605	1.9594	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7393	13224	2978	5811	6213	12733	7610	7668	5579	4124	6741	12362	5601	3981	3846	10223	7352	6531	8482	7525	7754	5692	5889	9088	8243	5496	4334	7793	4131	4411	7371	6921	6032	4446	5515	11382	4670	3960	7211	6613	6558	3927	11158	7411	3034	7886	3501	5597	2069	3665	5189	5813	3865	5316	3756	5391	277	2054	2934	2564	7831	393	492	1707
GCF_000142805.1	NC_013081	NC_013081.1	Lachancea thermotolerans CBS 6340 chromosome E complete sequence.	400341	403628	358792	359013	0	1521774	0.26	0.27	0.24	0.24	0.47	0.9604	0.0044	0.9956	1.9977	373	382	755	311974	271487	267260	271236	1121957	0.27	0.24	0.24	0.25	0.49	0.9138	0.166	0.8537	1.9811	0	354	368	722	309648	268990	264970	268801	1112409	0.28	0.24	0.24	0.25	0.49	0.9094	0.1831	0.8435	1.9733	0	1770	1805	1638	1613	6826	0.27	0.28	0.24	0.21	0.45	0.8773	0.2582	0.7866	1.9508	1	2	3	111	106	74	89	380	0.3	0.28	0.2	0.23	0.43	0.8703	0.1743	0.8423	1.9767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18	12	30	414	552	559	714	2239	0.19	0.25	0.25	0.32	0.57	0.8594	0.336	0.7288	1.947	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7532	12881	2922	5545	6065	12434	7655	7748	5487	4244	6761	12133	5687	3931	3945	10360	7013	6263	8304	7881	7749	5446	5873	8996	8118	5148	4308	7936	4042	4455	7210	6887	5900	4580	5409	11257	4538	3888	7094	6744	6594	3977	10632	7313	3012	7691	3428	5673	2131	3642	4993	5582	4029	5276	3645	5084	294	2017	2897	2474	7436	396	495	1697
GCF_000142805.1	NC_013082	NC_013082.1	Lachancea thermotolerans CBS 6340 chromosome F complete sequence.	431377	428380	386832	386325	0	1632914	0.26	0.26	0.24	0.24	0.47	0.9606	0.0041	0.9959	1.998	442	448	890	337334	288090	287968	291352	1204744	0.27	0.24	0.24	0.25	0.49	0.9132	0.1721	0.8487	1.9813	0	421	417	838	334381	284960	285379	288389	1193109	0.28	0.23	0.24	0.25	0.49	0.9114	0.1841	0.8413	1.9779	0	1864	1801	1418	1661	6744	0.28	0.29	0.2	0.23	0.43	0.8648	0.2638	0.7807	1.9513	4	6	10	380	458	363	336	1537	0.26	0.3	0.23	0.21	0.44	0.8787	0.1922	0.8367	1.9504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17	25	42	620	797	753	915	3085	0.2	0.26	0.24	0.3	0.54	0.8716	0.3102	0.7511	1.9562	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8145	14166	3175	5986	6532	13737	7710	8249	5927	4220	7224	13112	5936	4227	4117	10986	7499	6918	9047	8204	8408	5871	6288	9464	8910	5687	4664	8055	4368	4654	7914	7310	6276	4824	5789	12247	4841	4313	7643	7226	7080	4119	11655	7802	3261	7952	3705	6044	2249	3783	5479	6086	4036	5613	3996	5753	319	2129	3073	2657	8156	444	544	1865
GCF_000142805.1	NC_013083	NC_013083.1	Lachancea thermotolerans CBS 6340 chromosome G complete sequence.	453001	452666	408625	405773	0	1720065	0.26	0.26	0.24	0.24	0.47	0.9604	0.0039	0.9961	1.998	460	414	874	357173	306314	306280	309463	1279230	0.27	0.23	0.24	0.25	0.49	0.9131	0.169	0.8512	1.9812	0	436	394	830	353148	302635	302630	305565	1263978	0.28	0.24	0.24	0.25	0.49	0.9119	0.1893	0.8398	1.9723	0	2149	1934	1977	2103	8163	0.28	0.26	0.23	0.23	0.46	0.8661	0.274	0.7728	1.9516	6	4	10	314	304	208	214	1040	0.3	0.3	0.2	0.2	0.4	0.8736	0.2261	0.8048	1.9512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17	15	32	463	615	576	725	2379	0.19	0.26	0.24	0.31	0.55	0.8745	0.3029	0.7501	1.9613	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8335	14846	3357	6229	6925	14246	8630	8886	6319	4507	7667	14349	6318	4280	4321	11544	8037	7167	9679	8545	8785	6639	6654	10504	9150	5890	4914	8670	4560	5067	8425	7801	6679	4832	6201	13477	5218	4453	8172	7508	7315	4548	12155	8303	3379	8545	3729	6555	2280	4084	5629	6596	4265	6102	4098	6103	244	2204	3277	2815	8588	398	440	1863
GCF_000142805.1	NC_013084	NC_013084.1	Lachancea thermotolerans CBS 6340 chromosome H complete sequence.	374798	376520	334863	334998	2723	1423902	0.26	0.26	0.24	0.24	0.47	0.9605	0.0025	0.9975	1.9966	349	383	732	283510	243935	239991	246708	1014144	0.27	0.23	0.24	0.25	0.49	0.9135	0.1666	0.8535	1.9807	0	328	350	678	276954	237161	234627	239860	988602	0.28	0.23	0.24	0.25	0.49	0.911	0.1796	0.8464	1.9763	0	1320	1328	1197	1271	5116	0.26	0.29	0.22	0.23	0.45	0.8616	0.2799	0.7674	1.9401	5	1	6	292	348	259	309	1208	0.26	0.31	0.2	0.22	0.42	0.8881	0.2107	0.8146	1.9526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	13	22	35	478	637	654	800	2569	0.19	0.25	0.25	0.31	0.56	0.8665	0.3274	0.7369	1.9502	3	10	13	4421	4438	3238	4453	16550	0.26	0.27	0.21	0.26	0	0.47	0.9178	0.1328	0.8798	1.9902	6361	12121	2660	4900	5342	11429	6538	6889	4860	3719	5938	10792	4734	3333	3386	9238	6084	5646	7637	6662	6805	5263	5113	7965	7138	4645	3784	6935	3675	4095	6546	6191	5190	3915	4751	10474	4149	3488	6279	5725	5832	3378	9759	6506	2815	6874	2960	5087	1958	3151	4411	4981	3383	4754	3177	4598	215	1733	2456	2287	6714	304	377	1411