GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000182925.2	NC_026501	NC_026501.1	Neurospora crassa OR74A linkage group I; whole genome shotgun sequence.	2506759	2508358	2392573	2380628	10575	9798893	0.26	0.26	0.24	0.24	0.49	0.9617	0.0028	0.9972	1.999	1269	1206	2475	1419168	1333365	1642300	1487845	0	5882678	0.24	0.23	0.28	0.25	0.53	0.9191	0.1388	0.8752	1.9895	6363	1177	1154	2331	864506	740777	1049298	972416	3626997	0.24	0.21	0.28	0.27	0.55	0.8832	0.2675	0.7821	1.9597	0	106259	119819	115818	93341	0	435237	0.25	0.28	0.26	0.21	0.47	0.8617	0.3757	0.7076	1.945	0	31	21	52	12277	12207	13284	12053	49821	0.25	0.25	0.27	0.23	0	0.5	0.8909	0.2675	0.7808	1.9694	1733	1892	2057	1616	7298	0.24	0.26	0.27	0.22	0	0.49	0.8673	0.3216	0.74	1.9647	42	28	70	1307	1576	1591	1778	6252	0.2	0.25	0.26	0.29	0.54	0.891	0.2065	0.8219	1.9752	4	2	6	145	144	170	173	632	0.23	0.23	0.27	0.27	0	0.54	0.8836	0.0446	0.9575	1.9927	23615	34961	7960	14440	19659	35838	22896	13547	23954	20044	11796	24358	18844	18704	12122	24354	17694	16823	21685	13737	21590	18241	26942	23350	26014	25797	9682	18962	9569	20895	24003	17976	22743	6941	17909	29305	18026	25048	15626	33422	23239	21825	14824	28255	14123	15067	15297	17319	8512	15573	21126	21434	5624	20704	20513	23500	3049	16482	23102	12563	25332	2921	9920	17804
GCF_000182925.2	NC_026502	NC_026502.1	Neurospora crassa OR74A linkage group II; whole genome shotgun sequence.	1155911	1159287	1080258	1077627	5600	4478683	0.26	0.26	0.24	0.24	0.48	0.9611	0.0027	0.9973	1.9984	554	546	1100	600893	555912	705037	635128	100	2497070	0.24	0.22	0.28	0.26	0.53	0.916	0.1487	0.8671	1.9877	895	507	514	1021	377606	320044	468694	430055	1596399	0.24	0.21	0.28	0.27	0.55	0.8803	0.2795	0.7746	1.9546	0	43590	48989	47096	38235	100	178010	0.25	0.28	0.26	0.21	0.47	0.8572	0.3991	0.6925	1.9392	0	9	5	14	3058	3097	3222	2921	12298	0.24	0.26	0.26	0.23	0	0.5	0.8922	0.1959	0.8329	1.9822	385	573	519	392	1869	0.2	0.31	0.28	0.21	0	0.49	0.8715	0.3902	0.6949	1.9519	17	19	36	609	797	773	904	3083	0.2	0.26	0.25	0.3	0.55	0.8923	0.2295	0.8017	1.976	15	7	22	578	543	683	678	2482	0.23	0.22	0.28	0.27	0	0.55	0.8984	0.0404	0.9611	1.9926	10193	15134	3375	5887	8429	16366	10038	5742	11194	8947	4824	11093	7886	8111	5195	11052	7519	7677	9321	5806	9323	8017	12699	10122	11815	12104	3991	8078	4014	8915	10724	7521	10378	2803	7391	13379	8216	11934	6890	15447	9697	9985	6288	12639	6210	6383	7305	7411	3755	6770	8868	9205	2286	8972	9046	10175	1283	7319	9907	5458	11715	1199	4225	7741
GCF_000182925.2	NC_026503	NC_026503.1	Neurospora crassa OR74A linkage group III; whole genome shotgun sequence.	1349722	1348536	1287825	1284219	4500	5274802	0.26	0.26	0.24	0.24	0.49	0.9617	0.0018	0.9982	1.9991	677	647	1324	738539	687403	863908	774425	0	3064275	0.24	0.22	0.28	0.25	0.53	0.9171	0.1511	0.8649	1.9881	837	635	614	1249	459693	390015	562622	517840	1930170	0.24	0.21	0.28	0.27	0.55	0.8813	0.2823	0.7723	1.9558	0	57904	63997	63156	50159	0	235216	0.25	0.28	0.26	0.21	0.47	0.8602	0.3826	0.7036	1.9424	0	12	11	23	5324	5280	5586	5222	21412	0.25	0.24	0.26	0.25	0	0.51	0.9008	0.2011	0.8282	1.9825	615	501	479	514	2109	0.28	0.26	0.24	0.22	0	0.46	0.8722	0.3215	0.7363	1.9603	23	15	38	675	852	837	1007	3371	0.2	0.25	0.25	0.3	0.55	0.8912	0.2354	0.7976	1.9726	4	5	9	237	224	283	285	1029	0.23	0.22	0.28	0.28	0	0.55	0.8993	0.0397	0.9616	1.9917	12228	19728	3985	7347	10232	20283	12474	6939	12902	10623	5937	13065	9471	9520	6269	13681	9230	9027	11533	7161	11042	9459	14978	12652	14725	14174	4982	9783	4980	10839	12939	9684	12584	3421	9106	16016	9951	13926	8424	18511	11798	11871	7799	14743	7480	8111	8301	8751	4675	8360	10567	11403	2669	11178	10751	12217	1642	8618	11694	6661	13670	1424	4960	9335
GCF_000182925.2	NC_026504	NC_026504.1	Neurospora crassa OR74A linkage group IV; whole genome shotgun sequence.	1545504	1542175	1455019	1453363	4700	6000761	0.26	0.26	0.24	0.24	0.48	0.9619	0.0016	0.9984	1.9989	808	778	1586	857040	806957	999348	910127	0	3573472	0.24	0.23	0.28	0.26	0.53	0.9175	0.1414	0.8733	1.9885	808	745	725	1470	541727	469682	661831	617497	2290737	0.24	0.21	0.28	0.27	0.55	0.8834	0.2681	0.7824	1.9597	0	66678	74319	72530	57748	0	271275	0.25	0.28	0.26	0.21	0.47	0.8607	0.3834	0.703	1.9431	0	8	11	19	3912	4161	4252	3912	16237	0.24	0.26	0.26	0.24	0	0.5	0.885	0.2389	0.8017	1.9762	609	731	682	519	2541	0.26	0.28	0.26	0.2	0	0.47	0.8626	0.3672	0.7091	1.9568	41	27	68	1230	1515	1557	1859	6161	0.2	0.25	0.25	0.3	0.55	0.8919	0.2647	0.7753	1.9702	4	10	14	360	344	425	423	1552	0.23	0.22	0.27	0.27	0	0.55	0.8991	0.0411	0.9605	1.993	14505	22044	5038	9136	12614	22712	14380	8258	15112	13372	6993	15202	11745	11857	7713	15343	10778	11056	13712	8741	13745	11639	17462	14362	15612	16546	5888	12588	6014	13048	15084	11428	14603	4174	11285	18691	11584	15762	10169	21538	14093	13784	9410	17832	9432	9475	10171	10820	5862	10155	13071	13330	3521	12672	13026	14812	1994	10395	14146	7840	15441	1816	6595	11247
GCF_000182925.2	NC_026505	NC_026505.1	Neurospora crassa OR74A linkage group V; whole genome shotgun sequence.	1644252	1644680	1571482	1571632	4200	6436246	0.26	0.26	0.24	0.24	0.49	0.9621	0.0002	0.9998	1.9993	843	849	1692	916004	853159	1057722	961267	0	3788152	0.24	0.23	0.28	0.26	0.53	0.9173	0.1436	0.8711	1.9885	1005	778	784	1562	547584	466786	667155	621248	2302773	0.24	0.21	0.28	0.27	0.55	0.8821	0.279	0.7743	1.9562	0	68263	76315	74942	59606	0	279126	0.25	0.28	0.26	0.21	0.47	0.8605	0.3822	0.7036	1.9435	0	15	18	33	7066	6885	7211	7088	28250	0.25	0.24	0.26	0.24	0	0.5	0.8979	0.2136	0.8184	1.9825	724	804	716	684	2928	0.25	0.27	0.24	0.24	0	0.48	0.8566	0.2963	0.7594	1.966	31	31	62	1081	1352	1300	1562	5295	0.2	0.25	0.25	0.3	0.54	0.8966	0.2183	0.8106	1.9763	8	9	17	2332	1993	1051	1091	6467	0.26	0.25	0.25	0.24	0	0.49	0.886	0.0517	0.9505	1.9527	14815	23124	5000	9107	12341	23323	14176	8121	15321	13426	7009	15118	11707	11713	7647	15659	10816	11119	13909	8645	13784	11381	17774	14328	16363	16499	6239	11952	5938	13004	15378	11159	14675	4343	11274	18632	11882	16275	10152	21286	14380	14007	9325	18095	8994	9246	10079	11086	5473	9745	13014	13590	3416	12798	13295	14628	2021	10733	14252	8051	15761	1817	6559	11628
GCF_000182925.2	NC_026506	NC_026506.1	Neurospora crassa OR74A linkage group VI; whole genome shotgun sequence.	1089034	1087835	1019099	1018616	3800	4218384	0.26	0.26	0.24	0.24	0.48	0.9613	0.0008	0.9992	1.9987	534	533	1067	564630	527548	663904	601573	0	2357655	0.24	0.23	0.28	0.26	0.54	0.9159	0.1506	0.8657	1.9872	1307	490	490	980	354468	306468	439085	406822	1506843	0.24	0.21	0.28	0.27	0.55	0.8829	0.2757	0.7779	1.9568	0	41447	45970	45413	36144	0	168974	0.25	0.28	0.26	0.21	0.47	0.8588	0.4065	0.6881	1.9381	0	11	8	19	5247	5257	5715	5323	21542	0.25	0.24	0.27	0.24	0	0.51	0.9008	0.2105	0.8183	1.9845	667	776	801	549	2793	0.25	0.27	0.27	0.21	0	0.48	0.8774	0.3554	0.7128	1.9589	28	27	55	901	1162	1182	1404	4649	0.19	0.25	0.26	0.31	0.56	0.889	0.2568	0.7813	1.9678	0	5	5	132	121	157	152	562	0.23	0.22	0.28	0.27	0	0.55	0.8916	0.0605	0.9424	1.9918	9680	14863	3131	5940	8001	15075	9138	5387	10861	8775	4623	9819	7647	7880	5003	10271	7063	7484	9099	5632	8905	7583	11856	9314	10385	11391	3917	8283	3779	8156	10212	7133	9736	2717	7129	12151	7587	11118	6643	14393	9322	9217	6221	11732	5929	5967	7042	7113	3735	6328	8665	9002	2260	8189	8952	9441	1289	6949	9302	5085	9802	1188	4073	7017
GCF_000182925.2	NC_026507	NC_026507.1	Neurospora crassa OR74A linkage group VII; whole genome shotgun sequence.	1110508	1111104	1013145	1016246	4300	4255303	0.26	0.26	0.24	0.24	0.48	0.961	0.0018	0.9982	1.998	560	577	1137	579532	540348	680323	620743	0	2420946	0.24	0.22	0.28	0.26	0.54	0.9158	0.1484	0.8674	1.9874	3142	510	525	1035	364113	315063	451175	419407	1549758	0.24	0.21	0.28	0.27	0.55	0.8834	0.2667	0.7815	1.9577	0	40101	45335	43136	34824	0	163396	0.25	0.28	0.26	0.21	0.47	0.8604	0.4021	0.6902	1.9402	0	6	10	16	3779	3951	3819	3872	15421	0.25	0.25	0.26	0.25	0	0.5	0.8973	0.2522	0.7882	1.9774	405	407	435	409	1656	0.25	0.25	0.27	0.23	0	0.5	0.8776	0.2361	0.7991	1.9769	33	37	70	1163	1461	1520	1778	5922	0.19	0.25	0.26	0.3	0.56	0.8916	0.2199	0.8094	1.9736	1	3	4	108	99	128	128	463	0.23	0.21	0.28	0.28	0	0.55	0.8987	0.0436	0.9583	1.9913	10049	14467	3251	5812	8198	15480	9303	5441	10424	9226	4680	10530	7237	7683	5009	10350	7247	7640	9302	5972	9424	7694	12032	9775	10856	11428	4108	8095	4125	8980	10386	7598	9908	2777	7230	13137	8275	11088	7056	14771	9280	9742	6273	12829	6392	6154	7318	6854	4047	7223	8389	9125	2224	8310	8267	9592	1302	7312	9464	5513	11074	1232	4231	7644
NA	NC_026614	NC_026614.1	Neurospora crassa OR74A mitochondrion; complete genome.	20524	20889	10749	12678	0	64840	0.32	0.32	0.17	0.2	0.36	0.9217	0.0912	0.9152	1.942	56	0	56	11392	11986	4711	5731	0	33820	0.3	0.34	0.16	0.2	0.36	0.8828	0.1993	0.8256	1.9186	40	28	0	28	9586	10281	3830	4593	28290	0.33	0.37	0.14	0.16	0.3	0.8751	0.2333	0.8031	1.8508	40	4977	4351	1772	2251	0	13351	0.37	0.33	0.13	0.17	0.3	0.8919	0.1845	0.8338	1.872	1324	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	28	0	28	579	670	356	469	2074	0.28	0.32	0.17	0.23	0.4	0.8818	0.2142	0.8138	1.9487	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	203	135	230	206	129	86	239	377	55	25	458	253	171	28	239	96	273	81	137	485	33	254	37	274	55	41	148	134	364	165	89	156	32	455	175	50	41	36	78	47	57	10	458	22	23	212	78	178	74	144	31	35	703	192	44	79	53	9	17	46	197	61	109	25