GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000187245.1	NC_027866	NC_027866.1	Ogataea parapolymorpha DL-1 chromosome I; whole genome shotgun sequence.	239295	240238	238248	237785	200	955766	0.25	0.25	0.25	0.25	0.5	0.9517	0.0029	0.9971	1.9999	301	307	608	214334	184995	205962	212981	818272	0.26	0.22	0.25	0.26	0.51	0.912	0.1888	0.8356	1.9829	287	298	585	210557	181353	202933	209439	804282	0.27	0.23	0.25	0.26	0.51	0.9088	0.2094	0.8238	1.9764	1066	997	954	877	3894	0.29	0.26	0.23	0.22	0.45	0.8592	0.2896	0.7621	1.9529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11	6	17	251	318	309	382	1260	0.2	0.25	0.24	0.3	0.55	0.8855	0.2495	0.7863	1.97	1	2	3	1555	1664	1111	1525	5855	0.27	0.26	0.21	0.26	0	0.47	0.9216	0.1651	0.8527	1.9878	5627	9465	904	2740	4030	11689	4242	5385	4100	3046	3799	6382	2253	4249	1958	7800	3999	7692	6376	5188	9451	2998	5189	4740	7272	4577	2098	5144	2957	4031	7061	3948	4698	2199	3332	10421	3568	2118	6020	6276	4385	2945	7386	5826	2051	4137	2011	4284	1529	2082	5750	3814	1316	2897	1545	3541	232	2337	3843	1702	3419	305	364	1343
GCF_000187245.1	NC_027865	NC_027865.1	Ogataea parapolymorpha DL-1 chromosome II; whole genome shotgun sequence.	255604	257421	239422	238516	0	990963	0.26	0.26	0.24	0.24	0.48	0.954	0.0054	0.9946	1.9991	272	309	581	227366	192495	202457	211012	833330	0.28	0.23	0.24	0.25	0.49	0.9137	0.1778	0.844	1.983	265	305	570	224720	190017	200336	208715	823788	0.28	0.23	0.24	0.25	0.49	0.9074	0.2044	0.8281	1.9746	1091	1057	786	785	3719	0.3	0.28	0.21	0.2	0.42	0.8456	0.3347	0.7357	1.9294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	1	5	71	93	85	115	364	0.2	0.26	0.23	0.32	0.55	0.8851	0.3033	0.7445	1.9669	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5675	9562	1012	3076	4170	11348	4452	6059	3956	3072	4590	7459	2655	4029	2095	7999	4160	7474	6203	5442	8843	3055	4917	5755	7260	4415	2209	5744	3265	4324	6994	4281	4546	2544	3575	10013	3422	2057	5961	5763	4184	2650	8451	5365	2028	4591	1965	4700	1619	2461	5397	3586	1699	3162	1712	3897	231	2074	3574	1616	4098	280	383	1410
GCF_000187245.1	NC_027864	NC_027864.1	Ogataea parapolymorpha DL-1 chromosome III; whole genome shotgun sequence.	324061	326096	312239	311066	0	1273462	0.25	0.26	0.25	0.24	0.49	0.9577	0.005	0.995	1.9997	382	385	767	292936	248410	270410	277363	1089119	0.27	0.23	0.25	0.26	0.5	0.9123	0.1811	0.8412	1.9833	378	377	755	288311	244073	266310	273266	1071960	0.27	0.23	0.24	0.26	0.5	0.9062	0.2068	0.8255	1.9752	1261	1271	1005	1052	4589	0.29	0.27	0.22	0.22	0.44	0.8472	0.3538	0.7195	1.9362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	7	7	109	138	122	165	534	0.21	0.26	0.23	0.31	0.54	0.8466	0.2573	0.779	1.9674	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7248	12978	1188	3935	5363	15141	5718	7487	5365	3950	5641	9090	3466	5441	2719	10125	5497	9733	8077	6881	11505	4025	6510	7170	9665	5763	2871	7327	4132	5251	9113	5514	5838	2997	4607	13307	4689	2976	7955	7809	5748	3791	10547	7021	2710	5527	2597	5937	2197	3186	7359	4755	2059	4129	2172	5230	302	2894	4980	2247	5057	382	520	1869
GCF_000187245.1	NC_027863	NC_027863.1	Ogataea parapolymorpha DL-1 chromosome IV; whole genome shotgun sequence.	336701	337422	307648	307857	4000	1293628	0.26	0.26	0.24	0.24	0.48	0.9579	0.0014	0.9986	1.9968	389	397	786	304051	264608	267345	275886	1111890	0.27	0.23	0.24	0.25	0.49	0.9138	0.1785	0.8435	1.9841	376	382	758	299700	260695	263780	271962	1096137	0.28	0.24	0.24	0.25	0.49	0.9094	0.2016	0.8301	1.9766	1150	1096	901	923	4070	0.29	0.28	0.21	0.22	0.43	0.8463	0.2874	0.7652	1.947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10	10	20	291	359	372	440	1462	0.2	0.25	0.25	0.3	0.55	0.8831	0.248	0.7871	1.9701	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7607	12307	1397	4330	5727	14173	5984	8036	5403	4445	6491	9825	4028	5102	3038	10072	5800	9279	8453	7672	10947	4350	6504	8085	8924	5767	3270	8078	4560	5836	8909	6292	5894	3614	5112	12280	4454	2759	7926	7043	5636	3351	11344	6396	2989	6147	2673	6213	2465	3425	6963	4443	2438	4434	2443	5404	386	2569	4557	2336	5801	405	693	2057
GCF_000187245.1	NC_027862	NC_027862.1	Ogataea parapolymorpha DL-1 chromosome V; whole genome shotgun sequence.	343410	344331	319941	322585	0	1330267	0.26	0.26	0.24	0.24	0.48	0.9577	0.0055	0.9946	1.9992	409	402	811	311408	262888	277769	286938	1139003	0.28	0.23	0.24	0.25	0.5	0.9135	0.1879	0.8354	1.9833	402	395	797	308577	260382	275311	284066	1128336	0.28	0.23	0.24	0.25	0.49	0.9081	0.2132	0.821	1.9743	1301	1158	962	924	4345	0.31	0.27	0.2	0.22	0.42	0.8298	0.3449	0.7233	1.9355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	3	8	112	158	135	187	592	0.19	0.27	0.23	0.31	0.54	0.8751	0.375	0.6935	1.957	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7872	13585	1402	4208	5707	15524	6024	7861	5698	3910	6559	9758	3997	5506	2951	10989	5797	9933	8678	7395	11819	4202	6771	7890	10116	6014	3195	8058	4346	5819	9343	6065	6038	3613	4907	13660	4849	2897	7918	7903	5807	3558	11291	6973	2692	6095	2732	6621	2277	3283	7719	4864	2382	4387	2470	5316	317	2716	4792	2336	5723	435	552	1958
GCF_000187245.1	NC_027861	NC_027861.1	Ogataea parapolymorpha DL-1 chromosome VI; whole genome shotgun sequence.	404566	403683	354357	352327	0	1514933	0.27	0.27	0.23	0.23	0.47	0.9578	0.004	0.996	1.9968	486	464	950	357782	309399	300836	310757	1278774	0.28	0.24	0.23	0.24	0.48	0.9133	0.1774	0.8441	1.9823	479	451	930	352155	304352	296080	306138	1258725	0.28	0.24	0.23	0.24	0.48	0.9077	0.2024	0.8288	1.9743	1352	1241	876	911	4380	0.31	0.28	0.2	0.21	0.41	0.8454	0.2994	0.7565	1.9315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	4	8	122	165	143	181	611	0.2	0.27	0.23	0.3	0.53	0.8893	0.292	0.7582	1.9687	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8728	14675	1663	5285	6734	16116	7630	9703	6338	4866	8014	12110	4753	5330	3495	11530	7103	10161	9906	8833	11251	5472	7236	10121	9786	6724	3714	9642	5790	7036	10085	7305	6528	4247	5701	13569	4922	3023	9269	7993	5900	3461	13450	6983	2905	7651	2848	7745	2604	4104	7224	4424	3078	5284	2788	6289	363	2481	4583	2406	7272	502	636	2166
GCF_000187245.1	NC_027860	NC_027860.1	Ogataea parapolymorpha DL-1 chromosome VII; whole genome shotgun sequence.	405862	406288	352284	351136	0	1515570	0.27	0.27	0.23	0.23	0.46	0.9578	0.0022	0.9978	1.9963	449	456	905	361205	310947	298211	309628	1279991	0.28	0.24	0.23	0.24	0.48	0.9135	0.1733	0.8474	1.9829	436	448	884	355413	305524	293690	305019	1259646	0.29	0.24	0.23	0.25	0.47	0.908	0.2083	0.8273	1.9712	1842	1796	1419	1406	6463	0.29	0.28	0.21	0.22	0.43	0.8397	0.3295	0.7367	1.934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9	6	15	224	289	272	337	1122	0.2	0.25	0.24	0.3	0.54	0.883	0.2577	0.7785	1.9728	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8571	14480	1732	5683	6702	16376	7379	9889	6271	4675	8340	12394	5129	5128	3539	11237	7491	9970	9359	8729	10688	5577	6899	10878	9864	6465	3740	10008	5778	6826	9955	7423	6437	4262	5945	13700	4720	3026	8568	7663	6106	3361	13829	6546	2872	7740	2857	7731	2644	4014	7330	4293	3343	5617	2851	6628	336	2540	4499	2547	7465	430	539	2222