GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_001723175.1	NC_064650	NC_064650.1	Penicillium oxalicum strain HP7-1 chromosome I; whole genome shotgun sequence.	1436778	1431621	1500338	1501496	0	5870233	0.24	0.24	0.26	0.26	0.51	0.9632	0.0022	0.9978	1.9996	949	1005	1954	741010	723881	880425	818422	3163738	0.23	0.23	0.28	0.26	0.54	0.9152	0.1409	0.8747	1.9862	913	994	1907	649827	617167	784071	732257	2783322	0.24	0.23	0.27	0.26	0.54	0.8857	0.2346	0.8064	1.9678	90348	105740	95282	84952	376322	0.24	0.28	0.25	0.23	0.48	0.8669	0.3318	0.734	1.9555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23	11	34	493	626	679	797	2595	0.19	0.24	0.26	0.31	0.57	0.8916	0.2407	0.7923	1.9695	13	13	342	348	393	416	1499	0.23	0.23	0.26	0.28	0	0.54	0.8982	0.0721	0.9318	1.9931	18969	22639	5246	11820	16233	24726	17705	13671	17954	16793	12808	19407	16042	12849	10064	14489	16485	16027	18013	11896	19649	14408	20422	20317	18605	17349	6498	16422	8166	15377	19895	14621	18235	4605	12626	20723	13572	17189	10822	22294	15256	16948	13352	18585	11755	10491	10762	11872	8108	13096	17298	16367	4133	15120	10086	17171	1806	13068	16154	11452	19119	1884	9945	16677
GCF_001723175.1	NC_064651	NC_064651.1	Penicillium oxalicum strain HP7-1 chromosome II; whole genome shotgun sequence.	1134670	1133521	1190678	1193649	500	4653018	0.24	0.24	0.26	0.26	0.51	0.963	0.0018	0.9982	1.9995	798	750	1548	571492	562132	688071	633202	2454897	0.23	0.23	0.28	0.26	0.54	0.9147	0.1421	0.8732	1.9859	781	734	1515	498282	475792	609071	563655	2146800	0.24	0.23	0.28	0.26	0.54	0.8868	0.2342	0.8063	1.968	72626	85636	78264	68666	305192	0.24	0.28	0.25	0.23	0.48	0.8662	0.3327	0.7335	1.9559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	16	30	507	624	647	781	2559	0.2	0.24	0.25	0.31	0.56	0.8924	0.2212	0.8055	1.9711	3	3	77	80	89	100	346	0.22	0.23	0.26	0.29	0	0.55	0.9006	0.077	0.9268	1.9919	14363	16210	3931	9270	12453	18777	13274	10478	14249	12895	9795	15262	12342	10139	7705	10872	12601	12469	13668	9331	14993	11080	15853	16175	14271	13565	4957	12368	6569	11875	15050	11468	14266	3462	9750	16092	10389	13470	8587	17250	11753	13041	10436	14593	9157	7905	8396	8686	6169	10602	13369	12996	3127	11885	7357	13251	1311	10275	12765	8816	14950	1359	7400	13175
GCF_001723175.1	NC_064652	NC_064652.1	Penicillium oxalicum strain HP7-1 chromosome III; whole genome shotgun sequence.	1010627	1019416	1024798	1026880	500	4082221	0.25	0.25	0.25	0.25	0.5	0.96	0.0053	0.9947	1.9999	666	642	1308	468394	463193	552565	514537	1998689	0.24	0.23	0.27	0.26	0.53	0.914	0.1455	0.8714	1.9855	646	629	1275	406038	391559	488713	457104	1743414	0.24	0.23	0.27	0.26	0.53	0.8862	0.2323	0.8078	1.9686	61785	70930	63126	56575	252416	0.24	0.28	0.25	0.23	0.47	0.865	0.3337	0.7327	1.9541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	13	27	417	547	540	660	2164	0.19	0.25	0.25	0.31	0.56	0.8924	0.2576	0.7825	1.9648	6	6	154	157	186	198	695	0.22	0.23	0.27	0.28	0	0.55	0.8987	0.0719	0.9321	1.9902	11948	13447	3499	7649	10203	14840	10801	8807	11320	10817	7924	12340	9875	8162	6310	8826	10273	10223	11543	7572	12197	8774	12884	12938	11312	10957	4446	10448	5585	9718	12480	9254	11375	3131	7809	12523	8408	10569	6844	13827	9523	10125	8608	11753	7548	6760	7105	7272	5222	8542	10748	10267	2702	9517	6088	10715	1148	8359	10012	6886	11831	1241	6174	10112
GCF_001723175.1	NC_064653	NC_064653.1	Penicillium oxalicum strain HP7-1 chromosome IV; whole genome shotgun sequence.	995048	998139	1034283	1040711	500	4068681	0.24	0.25	0.25	0.26	0.51	0.9597	0.0046	0.9954	1.9996	653	696	1349	520054	508255	615403	572595	2216307	0.23	0.23	0.28	0.26	0.54	0.9146	0.1429	0.8732	1.986	645	685	1330	454871	430968	546250	510708	1942797	0.24	0.23	0.27	0.26	0.54	0.8873	0.2323	0.8082	1.9685	64884	76881	68765	61395	271925	0.24	0.29	0.25	0.22	0.47	0.8659	0.3341	0.7323	1.9553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8	11	19	299	406	388	492	1585	0.19	0.25	0.25	0.31	0.56	0.8975	0.2823	0.7597	1.9683	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	13490	15434	3733	8403	11306	17328	11897	9578	12673	11854	8909	13798	11377	9401	6979	10033	11135	11359	12526	8371	13705	9349	14401	14273	12854	12241	4462	11788	5669	10424	13813	10239	12817	3435	8992	14361	9440	12032	7404	15868	10875	11563	9578	12592	8451	7210	7374	8387	5906	9217	12199	11592	2801	10020	7138	11722	1333	9304	11232	7837	13123	1188	7112	11556
GCF_001723175.1	NC_064654	NC_064654.1	Penicillium oxalicum strain HP7-1 chromosome V; whole genome shotgun sequence.	944226	945835	965221	955902	0	3811184	0.25	0.25	0.25	0.25	0.5	0.9604	0.0057	0.9943	1.9999	612	578	1190	439718	438194	527216	488793	1893921	0.23	0.23	0.28	0.26	0.54	0.9139	0.1481	0.8687	1.9855	597	564	1161	378527	365457	461716	431133	1636833	0.23	0.23	0.27	0.26	0.54	0.8847	0.2441	0.7999	1.9661	60731	72111	64884	56915	254641	0.24	0.28	0.25	0.22	0.47	0.8667	0.3413	0.7277	1.9535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	13	14	27	408	574	552	682	2216	0.18	0.26	0.25	0.31	0.56	0.8881	0.2916	0.7548	1.9657	2	2	52	52	64	63	231	0.23	0.23	0.28	0.27	0	0.55	0.8958	0.0551	0.9479	1.9916	11100	12894	3035	6998	9502	14073	10332	8133	10630	10298	7327	11010	9322	7756	5783	8490	9587	9276	10805	6939	11670	8492	12038	11832	10956	10145	3848	10019	5002	9112	11974	8539	10660	2803	7365	11804	8087	10047	6306	13175	9080	10063	7536	10805	7130	6165	6464	6968	5039	7789	10169	9848	2485	8921	5887	9760	1098	7705	9649	6810	11089	1124	5909	9907
GCF_001723175.1	NC_064655	NC_064655.1	Penicillium oxalicum strain HP7-1 chromosome VI; whole genome shotgun sequence.	935391	934406	948499	952010	0	3770306	0.25	0.25	0.25	0.25	0.5	0.9619	0.0024	0.9976	2	611	571	1182	439666	439767	521583	487605	1888621	0.23	0.23	0.27	0.26	0.53	0.9146	0.1407	0.8748	1.9867	598	562	1160	384385	373930	464475	436327	1659117	0.23	0.23	0.27	0.26	0.54	0.8874	0.23	0.8095	1.9693	54894	65374	56643	50741	227652	0.24	0.29	0.25	0.22	0.47	0.865	0.3332	0.7334	1.9538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10	9	19	335	413	395	477	1620	0.21	0.25	0.24	0.3	0.54	0.8943	0.2121	0.8138	1.9805	3	3	78	77	99	93	347	0.22	0.22	0.29	0.27	0	0.55	0.8967	0.0921	0.9132	1.9892	11211	12372	3225	7147	9809	14378	10330	8353	10329	10470	7431	11736	9333	7679	5921	8319	9861	9770	11014	7325	11904	8299	12256	12571	10818	10192	4194	9912	5384	9261	11679	8950	10798	3024	7595	11953	8134	10008	6494	13140	8842	9961	7766	11222	7527	6515	6508	6833	5236	8083	10020	9770	2656	8746	5980	9973	1204	7819	9728	6739	11419	1202	5923	9856
GCF_001723175.1	NC_064656	NC_064656.1	Penicillium oxalicum strain HP7-1 chromosome VII; whole genome shotgun sequence.	644477	645406	652710	650315	500	2593408	0.25	0.25	0.25	0.25	0.5	0.9607	0.0026	0.9974	1.9999	445	403	848	302811	299023	359852	334110	1295796	0.23	0.23	0.28	0.26	0.53	0.9139	0.1463	0.8703	1.986	441	394	835	262269	251425	317296	296017	1127007	0.24	0.23	0.27	0.26	0.54	0.8838	0.2428	0.8006	1.9669	40305	47282	42272	37751	167610	0.24	0.28	0.25	0.23	0.47	0.8674	0.3331	0.7331	1.9545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	9	11	186	263	225	274	948	0.19	0.28	0.24	0.29	0.53	0.8953	0.276	0.7647	1.9767	2	2	51	53	59	68	231	0.22	0.23	0.26	0.29	0	0.55	0.9044	0.09	0.9151	1.9904	7620	8827	2143	5027	6505	9497	6928	5606	7297	7147	5072	7721	6515	5215	4060	5839	6719	6371	7391	4871	7726	5793	8198	8058	7314	7144	2758	6555	3458	6347	8085	5682	7376	1937	5184	7929	5428	6803	4598	9136	6015	6838	5207	7548	5216	4167	4509	4808	3531	5470	7018	6724	1725	5911	4117	7062	759	5361	6589	4578	7879	871	4321	6829
GCF_001723175.1	NC_064657	NC_064657.1	Penicillium oxalicum strain HP7-1 chromosome VIII; whole genome shotgun sequence.	451519	447269	448364	447568	500	1795220	0.25	0.25	0.25	0.25	0.5	0.9603	0.0056	0.9944	1.9998	276	263	539	194316	193015	231569	215148	834048	0.23	0.23	0.28	0.26	0.54	0.9131	0.144	0.8721	1.9858	261	261	522	168274	163090	205065	190534	726963	0.23	0.23	0.27	0.26	0.53	0.8841	0.2376	0.8046	1.9681	25224	29103	25692	23683	103702	0.24	0.28	0.24	0.23	0.47	0.8665	0.3305	0.7352	1.9549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	2	7	116	127	132	160	535	0.22	0.24	0.25	0.3	0.55	0.8953	0.156	0.8588	1.9853	10	10	702	695	680	771	2848	0.23	0.23	0.27	0.27	0	0.54	0.9007	0.0788	0.926	1.9913	5060	5376	1393	3208	4262	6042	4386	3755	4825	4716	3304	4757	4000	3469	2556	3809	4145	4230	4874	3201	5027	3807	5585	5255	4772	4868	1769	4209	2257	3983	5431	3677	4885	1279	3252	5243	3604	4546	3026	5881	4065	4083	3496	4956	3245	2681	3024	3059	2391	3468	4435	4336	1125	3763	2706	4472	547	3365	4164	2767	4784	536	2558	4122