Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_035222475.1 | NC_085892 | NC_085892.1 | Podospora pseudopauciseta strain CBS 411.78 chromosome 1; whole genome shotgun sequence. | 2186199 | 2184122 | 2337856 | 2333384 | 0 | 9041561 | 0.24 | 0.24 | 0.26 | 0.26 | 0 | 0.52 | 0.9607 | 0.0014 | 0.9986 | 1.9992 | 1478 | 1417 | 2895 | 1437954 | 1365980 | 1676412 | 1618412 | 0 | 6098758 | 0.24 | 0.22 | 0.28 | 0.26 | 0 | 0.54 | 0.9149 | 0.1574 | 0.8613 | 1.9847 | 21 | 1394 | 1393 | 2787 | 961497 | 846379 | 1151663 | 1129743 | 0 | 4089282 | 0.24 | 0.21 | 0.28 | 0.27 | 0 | 0.55 | 0.8816 | 0.2863 | 0.7699 | 1.955 | 0 | 94527 | 111266 | 104877 | 89082 | 0 | 399752 | 0.24 | 0.28 | 0.25 | 0.22 | 0 | 0.48 | 0.8454 | 0.4132 | 0.6873 | 1.9299 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 69 | 0 | 69 | 1439 | 1462 | 1657 | 1638 | 0 | 6196 | 0.23 | 0.24 | 0.27 | 0.27 | 0 | 0.53 | 0.8865 | 0.2336 | 0.7982 | 1.9775 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 26507 | 38373 | 7783 | 15477 | 21403 | 43767 | 25824 | 15883 | 25466 | 24581 | 12993 | 25340 | 21479 | 20009 | 13468 | 25985 | 19670 | 22149 | 23246 | 18374 | 26184 | 20745 | 31574 | 26457 | 30329 | 28905 | 8852 | 24546 | 11173 | 23342 | 26656 | 19331 | 24444 | 7557 | 20403 | 31637 | 20915 | 28523 | 16382 | 35997 | 24863 | 20812 | 17163 | 30055 | 16356 | 18474 | 26099 | 20551 | 10849 | 16318 | 22394 | 23208 | 5724 | 22569 | 25832 | 28559 | 3126 | 19200 | 23893 | 12436 | 26859 | 2684 | 12167 | 19080 |
GCF_035222475.1 | NC_085893 | NC_085893.1 | Podospora pseudopauciseta strain CBS 411.78 chromosome 3; whole genome shotgun sequence. | 1002838 | 1002835 | 1080102 | 1073400 | 0 | 4159175 | 0.24 | 0.24 | 0.26 | 0.26 | 0 | 0.52 | 0.9585 | 0.0031 | 0.9969 | 1.9991 | 683 | 659 | 1342 | 634500 | 599375 | 749646 | 729705 | 0 | 2713226 | 0.24 | 0.22 | 0.28 | 0.27 | 0 | 0.55 | 0.913 | 0.1674 | 0.8532 | 1.9825 | 0 | 634 | 650 | 1284 | 441243 | 387512 | 535065 | 530392 | 0 | 1894212 | 0.24 | 0.21 | 0.28 | 0.27 | 0 | 0.55 | 0.8805 | 0.2904 | 0.7673 | 1.9535 | 0 | 38745 | 46025 | 43875 | 36955 | 0 | 165600 | 0.24 | 0.28 | 0.26 | 0.22 | 0 | 0.48 | 0.8396 | 0.4428 | 0.6696 | 1.9199 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 46 | 0 | 46 | 914 | 942 | 1057 | 1047 | 0 | 3960 | 0.23 | 0.24 | 0.27 | 0.27 | 0 | 0.53 | 0.8872 | 0.2336 | 0.7978 | 1.9789 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 12116 | 17888 | 3405 | 6660 | 9327 | 21994 | 11719 | 7215 | 11961 | 11588 | 5858 | 11814 | 9303 | 9116 | 5837 | 12194 | 8542 | 10676 | 10351 | 8818 | 12100 | 9727 | 15021 | 12268 | 14179 | 13908 | 4068 | 11137 | 5133 | 10621 | 12605 | 8657 | 11796 | 3365 | 9044 | 15753 | 9833 | 13747 | 7824 | 17665 | 11012 | 9796 | 7753 | 14083 | 7501 | 8568 | 13401 | 8865 | 4830 | 7542 | 10055 | 10520 | 2605 | 10249 | 12248 | 12727 | 1395 | 8730 | 11172 | 5588 | 12015 | 1160 | 5252 | 8629 |
GCF_035222475.1 | NC_085894 | NC_085894.1 | Podospora pseudopauciseta strain CBS 411.78 chromosome 4; whole genome shotgun sequence. | 1029217 | 1031974 | 1020660 | 1023691 | 0 | 4105542 | 0.25 | 0.25 | 0.25 | 0.25 | 0 | 0.5 | 0.957 | 0.0028 | 0.9972 | 2 | 656 | 592 | 1248 | 575964 | 550657 | 679163 | 665549 | 0 | 2471333 | 0.24 | 0.22 | 0.28 | 0.27 | 0 | 0.54 | 0.9127 | 0.1615 | 0.8581 | 1.983 | 47 | 594 | 582 | 1176 | 397762 | 358160 | 482772 | 481677 | 0 | 1720371 | 0.24 | 0.21 | 0.27 | 0.27 | 0 | 0.55 | 0.883 | 0.2796 | 0.775 | 1.9546 | 0 | 38249 | 44140 | 41657 | 36959 | 0 | 161005 | 0.24 | 0.28 | 0.25 | 0.23 | 0 | 0.48 | 0.8438 | 0.4305 | 0.6758 | 1.9267 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 52 | 0 | 52 | 1085 | 1000 | 1210 | 1158 | 0 | 4453 | 0.24 | 0.22 | 0.27 | 0.26 | 0 | 0.53 | 0.8865 | 0.2433 | 0.7896 | 1.9773 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 11317 | 15403 | 3096 | 6374 | 8978 | 18219 | 10434 | 6509 | 10827 | 11329 | 5386 | 10224 | 8773 | 8352 | 5718 | 11130 | 7869 | 10101 | 9648 | 8076 | 11228 | 8617 | 13399 | 11054 | 12149 | 12760 | 3793 | 10710 | 4764 | 9610 | 11446 | 7818 | 10817 | 3193 | 8603 | 13577 | 8840 | 12119 | 7118 | 15595 | 10441 | 8784 | 7023 | 12876 | 7195 | 7870 | 12509 | 8147 | 4879 | 6889 | 9133 | 9814 | 2427 | 8904 | 10971 | 11319 | 1301 | 8144 | 9892 | 4960 | 10478 | 1127 | 5070 | 7509 |
GCF_035222475.1 | NC_085895 | NC_085895.1 | Podospora pseudopauciseta strain CBS 411.78 chromosome 6; whole genome shotgun sequence. | 1071931 | 1073262 | 1095346 | 1107441 | 0 | 4347980 | 0.25 | 0.25 | 0.25 | 0.25 | 0 | 0.51 | 0.961 | 0.0061 | 0.9939 | 1.9999 | 706 | 696 | 1402 | 635646 | 607880 | 738085 | 724139 | 0 | 2705750 | 0.24 | 0.22 | 0.27 | 0.27 | 0 | 0.54 | 0.9134 | 0.1595 | 0.8599 | 1.9838 | 20 | 651 | 685 | 1336 | 445588 | 401055 | 528943 | 529549 | 0 | 1905135 | 0.24 | 0.22 | 0.28 | 0.27 | 0 | 0.55 | 0.8853 | 0.2764 | 0.777 | 1.9578 | 0 | 40485 | 47041 | 44552 | 37925 | 0 | 170003 | 0.24 | 0.28 | 0.25 | 0.22 | 0 | 0.48 | 0.8427 | 0.4259 | 0.6795 | 1.9262 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 46 | 2 | 48 | 933 | 967 | 1050 | 1092 | 0 | 4042 | 0.23 | 0.24 | 0.26 | 0.27 | 0 | 0.53 | 0.8816 | 0.2498 | 0.7866 | 1.9712 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 12674 | 16800 | 3782 | 6993 | 9902 | 20423 | 11737 | 7519 | 11501 | 11798 | 6027 | 11875 | 9682 | 9177 | 6237 | 11824 | 8808 | 10538 | 10915 | 9046 | 12391 | 9805 | 14746 | 12445 | 13167 | 13319 | 4312 | 11939 | 5416 | 11176 | 12877 | 9179 | 11993 | 3618 | 9695 | 14887 | 9830 | 12882 | 7928 | 16556 | 11211 | 9662 | 7903 | 13898 | 8017 | 8825 | 13189 | 9269 | 5605 | 8125 | 9737 | 10687 | 2879 | 9721 | 12054 | 12565 | 1542 | 8640 | 10718 | 5724 | 12406 | 1306 | 6123 | 8847 |
GCF_035222475.1 | NW_026946662 | NW_026946662.1 | Podospora pseudopauciseta strain CBS 411.78 mitochondrion; complete sequence; whole genome shotgun sequence. | 38140 | 36484 | 14153 | 17605 | 0 | 106382 | 0.36 | 0.34 | 0.13 | 0.17 | 0 | 0.3 | 0.9212 | 0.1309 | 0.8803 | 1.8767 | 46 | 5 | 51 | 32843 | 30980 | 11791 | 15026 | 0 | 90640 | 0.31 | 0.34 | 0.15 | 0.19 | 0 | 0.35 | 0.8849 | 0.2171 | 0.8119 | 1.9028 | 1 | 16 | 5 | 21 | 6393 | 7098 | 2259 | 2904 | 0 | 18654 | 0.33 | 0.39 | 0.12 | 0.16 | 0 | 0.28 | 0.852 | 0.32 | 0.7411 | 1.8147 | 1 | 13639 | 12254 | 4708 | 5929 | 0 | 36530 | 0.37 | 0.34 | 0.13 | 0.16 | 0 | 0.29 | 0.8924 | 0.1743 | 0.8433 | 1.8612 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 27 | 0 | 27 | 562 | 647 | 345 | 453 | 0 | 2007 | 0.28 | 0.32 | 0.17 | 0.22 | 0 | 0.4 | 0.8856 | 0.2239 | 0.8062 | 1.9501 | 0 | 2 | 0 | 2 | 1970 | 1757 | 817 | 1123 | 0 | 5667 | 0.35 | 0.31 | 0.14 | 0.2 | 0 | 0.34 | 0.8983 | 0.2373 | 0.7945 | 1.9121 | 0 | 136 | 81 | 181 | 154 | 68 | 44 | 165 | 250 | 30 | 15 | 315 | 161 | 89 | 16 | 173 | 51 | 153 | 27 | 74 | 388 | 30 | 166 | 13 | 172 | 19 | 13 | 92 | 68 | 268 | 107 | 48 | 113 | 18 | 363 | 118 | 24 | 25 | 17 | 55 | 26 | 42 | 8 | 303 | 21 | 17 | 137 | 55 | 123 | 49 | 86 | 19 | 22 | 526 | 127 | 29 | 38 | 27 | 4 | 5 | 22 | 108 | 39 | 70 | 9 |