GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_020623625.1	NC_060200	NC_060200.1	Saccharomycodes ludwigii strain NBRC 1722 chromosome I; whole genome shotgun sequence.	1062886	1070691	472222	469314	0	3075113	0.35	0.35	0.15	0.15	0	0.31	0.9334	0.0067	0.9933	1.8887	644	677	1321	742171	638525	329382	376814	2086892	0.35	0.3	0.16	0.19	0.34	0.8933	0.2123	0.816	1.9081	604	638	1242	729428	624964	323103	369939	2047434	0.36	0.3	0.16	0.18	0.34	0.892	0.2207	0.8106	1.9028	8943	9752	3968	4051	26714	0.34	0.37	0.15	0.14	0.29	0.8426	0.2891	0.7696	1.8135	7	8	15	845	1057	467	496	2865	0.31	0.37	0.16	0.16	0.32	0.8621	0.2073	0.8185	1.8866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	29	28	57	862	1122	1006	1269	4259	0.21	0.26	0.23	0.3	0.53	0.8801	0.2974	0.7601	1.9638	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12475	15119	6610	19147	8458	9074	14810	27446	7364	6231	41857	31899	11687	3167	14982	15931	16630	4395	6598	22992	2406	17085	1134	30995	5496	9002	7667	19445	18378	6448	7817	4656	4545	13701	12785	8861	3644	3285	6973	6542	6094	709	38815	5193	2265	20096	3931	13932	6653	10043	3486	2005	27850	7303	4578	13135	518	523	2360	3372	19121	967	637	1121
GCF_020623625.1	NC_060201	NC_060201.1	Saccharomycodes ludwigii strain NBRC 1722 chromosome II; whole genome shotgun sequence.	776842	769995	353007	348819	100000	2348663	0.33	0.33	0.15	0.15	0.04	0.3	0.9348	0.0104	0.9897	1.875	473	446	919	549753	470161	245336	282699	1547949	0.35	0.3	0.16	0.18	0.34	0.8943	0.2115	0.8162	1.9086	442	414	856	529157	448050	231909	266332	1475448	0.36	0.3	0.15	0.18	0.34	0.8927	0.2156	0.8133	1.9039	7297	7726	4174	3808	23005	0.35	0.36	0.14	0.15	0.29	0.8438	0.297	0.7578	1.8296	4	1	5	238	294	113	145	790	0.31	0.37	0.15	0.17	0.32	0.8627	0.2484	0.7873	1.8918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17	16	33	527	667	578	722	2494	0.21	0.27	0.23	0.29	0.52	0.8623	0.3604	0.7187	1.9508	8	14	22	11827	12744	8238	11235	44044	0.26	0.26	0.21	0.26	0	0.47	0.9233	0.153	0.864	1.9868	8892	10874	5120	13548	6022	6852	10162	19906	5262	4394	29800	23328	8475	2305	11088	11836	11728	3249	4824	16349	1760	11644	800	22455	3911	6418	5603	13782	13484	4884	5756	3373	3148	10115	9385	6438	2560	2436	4829	4459	4546	535	28181	3697	1786	13992	2861	10247	4978	7157	2593	1436	20084	5339	3335	9494	319	405	1629	2349	13711	644	405	822
GCF_020623625.1	NC_060202	NC_060202.1	Saccharomycodes ludwigii strain NBRC 1722 chromosome III; whole genome shotgun sequence.	641801	641993	282607	282002	0	1848403	0.35	0.35	0.15	0.15	0	0.31	0.9338	0.0012	0.9988	1.8879	396	415	811	448690	384763	195734	227258	1256445	0.35	0.3	0.16	0.19	0.35	0.8922	0.2177	0.8121	1.907	370	393	763	442384	377679	192774	223505	1236342	0.36	0.3	0.15	0.18	0.34	0.8912	0.2223	0.8099	1.9029	4598	5137	1617	2071	13423	0.35	0.37	0.12	0.16	0.28	0.8079	0.4214	0.6975	1.7498	1	3	4	309	406	151	171	1037	0.3	0.39	0.15	0.17	0.31	0.8602	0.2012	0.8212	1.8856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	24	16	40	557	740	734	938	2969	0.19	0.25	0.25	0.31	0.56	0.88	0.2907	0.7573	1.9626	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7443	8987	4082	11503	5241	5836	8681	16789	4377	3534	25193	19450	6798	1858	9039	9998	9621	2752	4148	14260	1372	10208	632	19322	3171	5423	4515	11575	11374	3863	4896	2822	2713	8608	7802	5276	2127	1940	4123	3644	3973	438	23452	3175	1356	11990	2480	8564	4070	6001	2104	1128	16570	4548	2741	7684	253	321	1299	1983	11362	561	381	667
GCF_020623625.1	NC_060203	NC_060203.1	Saccharomycodes ludwigii strain NBRC 1722 chromosome IV; whole genome shotgun sequence.	580580	579349	257888	259111	0	1676928	0.35	0.35	0.15	0.15	0	0.31	0.9343	0.0034	0.9966	1.8912	389	353	742	415308	352947	182213	209143	1159611	0.35	0.3	0.16	0.19	0.34	0.893	0.2147	0.8142	1.907	365	336	701	408888	346485	178324	205742	1139439	0.36	0.31	0.15	0.18	0.34	0.8937	0.2136	0.8154	1.9052	3692	3723	1583	1585	10583	0.36	0.33	0.15	0.16	0.31	0.8617	0.3296	0.7354	1.8404	7	4	11	517	572	256	241	1586	0.33	0.36	0.16	0.15	0.31	0.8416	0.2005	0.8249	1.8719	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16	12	28	405	558	489	633	2085	0.2	0.27	0.23	0.3	0.54	0.881	0.3451	0.7216	1.9542	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6947	8321	3949	10429	4725	5186	7619	15411	3920	3458	23091	17720	6202	1800	8339	9557	8706	2471	3779	12769	1421	9392	650	17304	2912	4921	4353	10968	10014	3583	4339	2517	2496	8189	7264	4978	2092	1932	3807	3400	3536	386	21876	2835	1349	11019	2263	7891	3910	5684	1887	1048	15503	4173	2560	7267	376	322	1237	1795	10477	526	356	596
GCF_020623625.1	NC_060204	NC_060204.1	Saccharomycodes ludwigii strain NBRC 1722 chromosome V; whole genome shotgun sequence.	491731	491975	218811	218118	0	1420635	0.35	0.35	0.15	0.15	0	0.31	0.9341	0.0018	0.9982	1.8903	318	294	612	344800	293866	152602	173680	964948	0.35	0.3	0.16	0.19	0.35	0.8936	0.2142	0.8142	1.9087	298	268	566	338451	286790	149209	169803	944253	0.36	0.3	0.16	0.18	0.34	0.8929	0.2145	0.8143	1.9061	4930	5578	2351	2598	15457	0.33	0.38	0.14	0.15	0.29	0.8635	0.2399	0.7975	1.8421	4	3	7	224	258	115	110	707	0.32	0.36	0.16	0.15	0.32	0.8524	0.2656	0.7747	1.8732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	15	22	37	562	725	639	801	2727	0.21	0.27	0.23	0.29	0.52	0.8734	0.3219	0.7338	1.9619	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5624	6865	3113	8693	3853	4348	6581	12746	3481	2794	19219	14958	5102	1454	7182	8076	7531	2109	3226	10700	1153	7562	532	14176	2370	4269	3514	8835	8510	2909	3693	2233	2099	6671	6056	4270	1753	1688	3321	2944	2935	316	18141	2404	1049	8953	1952	6466	2992	4506	1677	913	12635	3337	2074	5659	157	237	1045	1460	8574	336	222	491
GCF_020623625.1	NC_060205	NC_060205.1	Saccharomycodes ludwigii strain NBRC 1722 chromosome VI; whole genome shotgun sequence.	451177	452779	204387	203410	0	1311753	0.34	0.35	0.16	0.16	0	0.31	0.9342	0.0042	0.9958	1.8942	258	299	557	324887	280854	144730	167656	918127	0.35	0.3	0.16	0.19	0.34	0.8939	0.2133	0.8148	1.9094	246	280	526	320994	276398	142897	165570	905859	0.36	0.3	0.15	0.18	0.34	0.8928	0.2198	0.8103	1.9017	2446	2961	986	990	7383	0.34	0.4	0.13	0.13	0.26	0.8366	0.3155	0.7387	1.7944	0	2	2	72	84	37	44	237	0.3	0.35	0.16	0.19	0.34	0.8858	0.1608	0.8573	1.9202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10	13	23	368	439	403	512	1722	0.21	0.25	0.23	0.3	0.53	0.876	0.2707	0.7753	1.9701	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5527	6670	3113	9106	3841	4244	6431	12044	3193	2958	17450	14190	4674	1365	6459	7211	6912	2113	3123	10304	1014	7902	464	13968	2256	4549	3300	8775	8141	2847	3705	2001	2090	6174	6047	4010	1596	1432	3356	2769	2825	288	16824	2191	939	9136	1760	6182	2924	4325	1449	889	12139	3175	2022	5716	160	249	969	1441	7982	373	231	430
GCF_020623625.1	NC_060206	NC_060206.1	Saccharomycodes ludwigii strain NBRC 1722 chromosome VII; whole genome shotgun sequence.	274086	271002	123952	123421	0	792461	0.35	0.34	0.16	0.16	0	0.31	0.9285	0.0078	0.9922	1.8956	197	172	369	191869	162748	85764	98369	538750	0.35	0.3	0.16	0.19	0.35	0.8935	0.2238	0.8078	1.9094	182	161	343	188290	158677	84246	96436	527649	0.36	0.3	0.16	0.18	0.34	0.8914	0.2305	0.8043	1.9048	2858	3039	921	1168	7986	0.35	0.38	0.13	0.14	0.27	0.8399	0.3131	0.758	1.7711	1	1	2	72	65	36	39	212	0.34	0.3	0.17	0.18	0.36	0.8987	0.2395	0.7954	1.9141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	9	23	313	463	421	527	1724	0.18	0.27	0.24	0.31	0.55	0.878	0.3454	0.7177	1.9568	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3109	3970	1748	4957	2219	2515	3568	6863	1897	1665	10272	8378	2861	731	3774	4368	3983	1317	1904	5942	687	4132	320	7908	1455	2561	1962	5191	4713	1781	2116	1330	1184	3591	3441	2484	902	907	1932	1588	1657	181	10095	1395	658	5053	1173	3534	1753	2446	877	497	6550	1878	1170	3355	85	159	578	805	5017	253	166	308