GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_020906515.1	NC_085849	NC_085849.1	Vanrija pseudolonga chromosome 1; complete sequence.	898456	899071	1466235	1469507	4733269	0.19	0.19	0.31	0.31	0.62	0.9479	0.0015	0.9985	1.9579	889	867	1756	677139	634722	1187586	1025820	3525267	0.19	0.18	0.34	0.29	0.63	0.8987	0.1636	0.8544	1.9354	30	863	839	1702	503742	460203	911596	776591	2652132	0.2	0.18	0.33	0.29	0	0.62	0.8638	0.2845	0.7705	1.9176	88927	91855	138973	142040	461795	0.2	0.2	0.29	0.31	0	0.6	0.822	0.3648	0.7135	1.9172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18	25	43	627	771	799	983	3180	0.2	0.24	0.25	0.31	0	0.56	0.8434	0.3011	0.753	1.9498	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11648	20069	4338	8844	16854	26075	17230	5295	15906	13712	3010	8089	12423	20433	6117	13907	10134	14943	13975	5422	17920	10335	28339	7972	18592	19072	4374	8504	2996	10980	15233	9152	21534	1626	10759	27728	16833	23601	11087	32824	18048	31541	3087	28897	11922	7478	10406	8659	6778	9128	25911	29668	1816	14956	13457	18109	1164	16443	24401	14473	13262	859	5578	17772
GCF_020906515.1	NC_085850	NC_085850.1	Vanrija pseudolonga chromosome 2; complete sequence.	858775	856900	1409800	1410818	4536293	0.19	0.19	0.31	0.31	0.62	0.9478	0.0015	0.9985	1.9568	873	855	1728	635201	594050	1126303	970187	3325741	0.19	0.18	0.34	0.29	0.63	0.8975	0.1637	0.8548	1.9344	0	847	839	1686	484082	442014	882567	754347	2563010	0.2	0.18	0.33	0.29	0	0.62	0.8632	0.2838	0.771	1.9169	82792	85375	132069	133723	433959	0.2	0.2	0.29	0.31	0	0.6	0.8234	0.3622	0.7156	1.9167	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17	16	33	486	625	608	768	2487	0.2	0.25	0.25	0.31	0	0.56	0.8403	0.3562	0.7168	1.9388	1	1	27	22	29	33	111	0.24	0.2	0.26	0.3	0	0.56	0.9099	0.1666	0.8468	1.9851	11302	19129	4337	8454	16245	24249	17139	4817	15308	13642	2627	7660	11513	19675	5977	13218	9536	14069	12921	4905	16511	10205	27559	7795	18174	18251	4312	7737	2777	10932	14711	8808	21207	1472	10089	26904	16512	22248	10682	31891	17135	30725	2904	28412	12153	7154	10518	8259	6932	9157	24938	28809	1643	14694	12313	17525	1186	16497	23536	14127	13127	840	5717	18292
GCF_020906515.1	NC_085851	NC_085851.1	Vanrija pseudolonga chromosome 3; complete sequence.	806371	804921	1324564	1328935	4264791	0.19	0.19	0.31	0.31	0.62	0.9474	0.0025	0.9975	1.9565	812	865	1677	596386	559628	1061054	912401	3129469	0.19	0.18	0.34	0.3	0.63	0.8976	0.1654	0.8533	1.9337	0	778	829	1607	456364	419244	840259	716815	2432682	0.2	0.18	0.33	0.29	0	0.62	0.8629	0.2853	0.77	1.9153	77639	80468	123169	123237	404513	0.2	0.2	0.29	0.31	0	0.6	0.8222	0.3659	0.7135	1.9149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	24	34	58	882	1110	1029	1317	4338	0.2	0.25	0.24	0.3	0	0.54	0.848	0.3302	0.734	1.9471	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10443	18430	3986	7911	15086	23852	16049	4528	14280	12919	2418	7085	10905	18929	5299	12508	9143	13639	12491	4570	16019	9389	26721	7145	16566	17413	4078	7314	2800	9842	13572	8481	20306	1512	9530	25728	15648	21148	9798	30418	15912	30376	2831	27064	11601	6775	9996	7532	6506	8970	23754	27801	1521	13990	11611	16161	1146	15514	22450	13373	12359	838	5318	17402
GCF_020906515.1	NC_085852	NC_085852.1	Vanrija pseudolonga chromosome 4; complete sequence.	670947	667988	1078109	1081137	3498181	0.19	0.19	0.31	0.31	0.62	0.9462	0.0036	0.9964	1.96	747	669	1416	478510	453846	845642	739431	2517429	0.19	0.18	0.34	0.3	0.63	0.8984	0.1545	0.8624	1.9357	0	730	654	1384	366142	340935	668251	577699	1953027	0.2	0.18	0.33	0.29	0	0.62	0.8641	0.2801	0.7738	1.9188	63054	65381	98296	100952	327683	0.2	0.2	0.29	0.31	0	0.6	0.8219	0.3705	0.7106	1.915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11	15	26	357	488	469	600	1914	0.19	0.26	0.24	0.31	0	0.56	0.8396	0.3759	0.7016	1.9389	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8970	14083	3263	6382	11992	19104	12130	3779	11800	10800	2055	5852	8998	15320	4465	9776	7411	11423	10683	3804	13511	7444	21589	6196	13067	13806	3274	6184	2312	8019	11425	6571	16248	1361	7935	21319	12539	16402	8429	23826	12800	23572	2243	21831	9290	5347	8298	6176	5129	6708	19000	22605	1264	10487	9577	12672	996	12470	18032	10299	9251	586	4185	12831
GCF_020906515.1	NC_085853	NC_085853.1	Vanrija pseudolonga chromosome 5; complete sequence.	512055	510862	850940	850789	2724646	0.19	0.19	0.31	0.31	0.62	0.9459	0.0013	0.9987	1.9548	564	538	1102	371569	347542	665577	572549	1957237	0.19	0.18	0.34	0.3	0.64	0.8967	0.1673	0.852	1.9305	0	537	519	1056	276131	253245	513110	437291	1479777	0.2	0.18	0.33	0.29	0	0.62	0.8628	0.2823	0.7715	1.915	49721	51005	80622	80595	261943	0.2	0.2	0.29	0.31	0	0.61	0.8243	0.3663	0.713	1.9137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	20	18	38	534	724	677	849	2784	0.19	0.26	0.24	0.31	0	0.55	0.848	0.3327	0.7304	1.947	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6746	10810	2413	4639	9193	14781	9359	2697	8764	7724	1465	4405	6722	11384	3193	7599	5301	8571	7761	3007	9699	5493	16300	4302	10543	10506	2450	4338	1748	5845	8458	5032	12058	864	5634	15918	9450	12984	6583	18593	9912	18687	1621	16621	6905	3788	6341	4386	3800	5401	14476	17560	922	8097	6698	9885	743	9532	14534	7854	7346	457	3078	9900
GCF_020906515.1	NC_085854	NC_085854.1	Vanrija pseudolonga chromosome 6; complete sequence.	493989	490334	809825	814471	2608619	0.19	0.19	0.31	0.31	0.62	0.945	0.0066	0.9934	1.9561	535	479	1014	362641	337303	641105	553189	1894238	0.19	0.18	0.34	0.29	0.63	0.8967	0.1701	0.8494	1.9333	0	508	466	974	270789	244968	494716	424277	1434750	0.2	0.18	0.33	0.29	0	0.62	0.8619	0.2893	0.7668	1.9161	47901	49812	76449	77510	251672	0.2	0.2	0.29	0.31	0	0.6	0.8233	0.3725	0.7092	1.9122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	22	12	34	522	651	600	751	2524	0.21	0.26	0.24	0.3	0	0.54	0.8409	0.3306	0.7359	1.9474	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6236	10823	2434	4558	9053	14016	9218	2692	8412	7536	1381	4395	6611	11356	3215	7227	5378	8135	7144	2670	9566	5631	15401	4309	9706	10219	2493	4440	1550	5811	7745	4885	11787	841	5456	15233	9050	12903	5817	17738	9685	17613	1705	15793	6794	3785	5799	4763	3663	5111	13982	16570	1052	7806	7229	9893	688	9207	13661	7902	7347	482	3112	10189
GCF_020906515.1	NC_085855	NC_085855.1	Vanrija pseudolonga chromosome 7; complete sequence.	461312	460339	759591	755019	2436261	0.19	0.19	0.31	0.31	0.62	0.9462	0.0041	0.9959	1.9568	527	480	1007	332708	313439	591668	510436	1748251	0.19	0.18	0.34	0.29	0.63	0.8973	0.1631	0.8557	1.9355	0	509	468	977	261759	241408	477585	410591	1391343	0.2	0.18	0.33	0.29	0	0.62	0.8652	0.276	0.7764	1.9192	39393	40972	63520	63613	207498	0.19	0.2	0.29	0.31	0	0.61	0.8212	0.3788	0.7046	1.9105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	12	26	385	469	491	609	1954	0.2	0.24	0.25	0.31	0	0.56	0.8373	0.3169	0.7436	1.9436	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6539	10728	2357	4350	8401	14125	8973	2796	8056	7370	1531	4029	5905	10683	2938	7603	5002	8203	7677	2851	9350	5333	15284	4360	9504	9959	2306	4134	1712	5615	8500	4679	11971	874	5211	15799	8983	11937	6369	17497	8951	16754	1718	15924	6604	3917	6046	3989	3501	5044	12965	15982	875	7532	6200	9053	662	8544	12952	7197	6545	395	2704	9065
GCF_020906515.1	NC_085856	NC_085856.1	Vanrija pseudolonga chromosome 8; complete sequence.	26390	26152	33414	34228	120184	0.22	0.22	0.28	0.28	0.56	0.9478	0.0166	0.9836	1.9885	16	16	32	6411	7046	10728	8764	32949	0.19	0.21	0.33	0.27	0.59	0.9023	0.2001	0.8258	1.9575	0	16	16	32	4275	4636	7298	5883	22092	0.21	0.21	0.31	0.27	0	0.58	0.8663	0.2778	0.7718	1.9479	1204	1475	1806	1661	6146	0.19	0.23	0.29	0.29	0	0.58	0.8431	0.361	0.7154	1.9336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	122	105	54	107	116	138	147	51	134	141	27	78	137	141	63	128	143	111	143	48	129	104	229	90	98	183	71	108	47	105	147	113	177	24	87	178	151	161	98	212	127	207	47	191	103	78	78	47	73	103	215	184	40	144	93	152	19	133	180	121	118	11	61	163
GCF_020906515.1	NW_026944021	NW_026944021.1	Vanrija pseudolonga isolate DUCC4014 mitochondrion; complete genome.	8460	8780	3836	4048	25124	0.34	0.35	0.15	0.16	0.31	0.9227	0.0455	0.9556	1.8972	14	1	15	285	336	213	279	1113	0.26	0.3	0.19	0.25	0.44	0.888	0.2438	0.7931	1.9678	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	1	15	285	336	213	279	1113	0.26	0.3	0.19	0.25	0	0.44	0.888	0.2438	0.7931	1.9678	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0