GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000002525.2	NC_006067	NC_006067.1	Yarrowia lipolytica CLIB122 chromosome A complete sequence.	591235	590217	561558	559830	421	2303261	0.26	0.26	0.24	0.24	0.49	0.9583	0.0024	0.9976	1.9994	420	427	847	243002	222114	277621	257902	1000639	0.24	0.23	0.27	0.27	0.53	0.9049	0.1872	0.8366	1.9828	342	341	683	230452	209521	264706	244524	949203	0.25	0.22	0.27	0.26	0.53	0.9018	0.2032	0.8278	1.9739	0	5965	5626	5294	5517	22402	0.28	0.24	0.25	0.23	0.48	0.8744	0.298	0.7596	1.965	0	1	1	14	9	9	12	44	0.32	0.2	0.2	0.27	0	0.48	0.8649	0.3602	0.6964	1.9735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	69	67	136	1967	2578	2536	3138	10219	0.19	0.25	0.25	0.31	0.55	0.8468	0.3225	0.7397	1.9535	7	16	23	667	589	624	683	2563	0.26	0.23	0.25	0.27	0.51	0.9091	0.1236	0.885	1.9961	6916	13381	1369	4727	3635	13322	7088	6727	6472	4198	2949	6250	2835	3469	2420	9585	6147	8059	7028	5295	10302	4524	7139	6477	9586	8262	1869	3753	2233	6309	7383	4134	6607	859	3772	11917	4569	7117	6890	9725	3784	1808	4234	6833	2359	4764	1659	3219	2257	3130	5174	3291	696	5115	1473	2753	315	2632	2776	2116	3604	315	543	6215
GCF_000002525.2	NC_006068	NC_006068.1	Yarrowia lipolytica CLIB122 chromosome B complete sequence.	786044	780798	751136	748396	0	3066374	0.26	0.25	0.24	0.24	0.49	0.958	0.0052	0.9948	1.9996	530	493	1023	362544	337160	414862	386615	1501181	0.24	0.22	0.27	0.26	0.53	0.9083	0.1758	0.8456	1.9844	486	458	944	345102	319449	397463	369145	1431159	0.25	0.22	0.27	0.26	0.53	0.8982	0.2237	0.8145	1.9707	0	12260	12073	11143	11363	46839	0.28	0.25	0.24	0.23	0.47	0.8753	0.2709	0.7783	1.9685	2	0	2	57	73	62	70	262	0.22	0.27	0.24	0.27	0	0.51	0.8958	0.1715	0.8452	1.989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	29	30	59	859	1115	1082	1336	4392	0.19	0.25	0.25	0.31	0.55	0.8478	0.3269	0.737	1.9515	9	5	14	433	377	402	441	1653	0.26	0.23	0.24	0.27	0.51	0.9094	0.1204	0.8874	1.9964	10396	20564	2117	7858	5588	21078	12305	9855	9658	6475	4117	9229	4926	4564	3500	13494	10670	11268	10597	7078	15432	7750	10652	10330	14350	11580	2833	5599	3278	9848	10917	6356	9939	1218	5537	17361	6643	10684	10146	14534	5298	2379	5806	9511	3653	7452	2276	4921	3405	4811	7224	4233	1042	8607	2542	4615	477	3816	3885	3262	5412	599	1217	10192
GCF_000002525.2	NC_006069	NC_006069.1	Yarrowia lipolytica CLIB122 chromosome C complete sequence.	840051	840721	796049	795787	1	3272609	0.26	0.26	0.24	0.24	0.49	0.9584	0.0006	0.9994	1.9995	532	516	1048	340310	319383	390597	363667	1413957	0.24	0.23	0.27	0.26	0.54	0.906	0.1827	0.8405	1.9827	461	463	924	319976	298167	369423	342064	1329630	0.25	0.22	0.27	0.26	0.53	0.8992	0.2205	0.8155	1.9695	0	12909	13231	12456	12953	51549	0.27	0.24	0.25	0.24	0.49	0.8749	0.2731	0.7768	1.9686	1	0	1	38	71	49	39	197	0.19	0.36	0.25	0.2	0	0.45	0.8549	0.4164	0.6656	1.9505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	52	38	90	1250	1713	1717	2111	6791	0.19	0.25	0.25	0.31	0.56	0.8492	0.3166	0.7426	1.9525	16	9	25	772	688	713	802	2975	0.26	0.23	0.24	0.27	0.51	0.9103	0.1165	0.8902	1.9969	9561	18393	2070	7675	5040	18713	10297	9337	8930	5991	3945	8423	4232	4416	3584	12833	9594	11118	9749	7024	14373	7252	9766	9018	12741	11398	2744	5377	3131	9740	10292	5784	9301	1183	5384	15495	6433	10258	9551	13084	4928	2213	5758	9473	3310	7121	2382	4472	3321	4427	7052	4161	978	7816	2047	4165	470	3652	3971	2728	5132	534	1060	8724
GCF_000002525.2	NC_006070	NC_006070.1	Yarrowia lipolytica CLIB122 chromosome D complete sequence.	919804	921112	897699	894410	247	3633272	0.25	0.25	0.25	0.25	0.49	0.9589	0.0025	0.9975	1.9998	613	564	1177	410678	374996	474364	444727	1704765	0.24	0.22	0.28	0.26	0.54	0.9079	0.18	0.8427	1.9823	562	535	1097	393422	357308	457131	427115	1634976	0.25	0.22	0.28	0.26	0.54	0.8999	0.2138	0.8211	1.9724	0	13895	13808	13260	13508	54471	0.27	0.24	0.25	0.24	0.49	0.8757	0.2778	0.7744	1.9684	1	1	2	47	58	40	48	193	0.26	0.27	0.21	0.26	0	0.46	0.9202	0.2593	0.7722	1.9821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	38	23	61	888	1171	1122	1409	4590	0.19	0.26	0.25	0.31	0.55	0.852	0.3008	0.7543	1.9556	9	5	14	419	366	389	426	1600	0.26	0.23	0.24	0.27	0.51	0.9064	0.1332	0.8773	1.9949	11911	24069	2259	8126	6004	24034	12386	11598	11194	7073	4735	10269	4836	5691	4049	16186	11140	14572	11839	8889	18646	8024	12403	11020	16709	13633	2928	6219	3628	10971	12633	6611	11183	1186	5911	20710	8165	12246	11877	17462	5941	3107	7293	12258	3967	7503	2756	5321	3670	5396	9344	5718	1057	8752	2480	4770	528	5016	4936	3464	5919	593	999	11088
GCF_000002525.2	NC_006071	NC_006071.1	Yarrowia lipolytica CLIB122 chromosome E complete sequence.	1069738	1069656	1043687	1040622	400	4224103	0.25	0.25	0.25	0.25	0.49	0.9609	0.0015	0.9985	1.9998	770	801	1571	531450	497827	612383	559093	2200753	0.24	0.22	0.28	0.26	0.53	0.9078	0.1778	0.8445	1.9835	709	742	1451	509574	475813	589606	536851	2111844	0.25	0.22	0.27	0.25	0.53	0.9016	0.2084	0.8247	1.9716	1	12748	11779	11392	11486	47405	0.28	0.24	0.24	0.24	0.48	0.8666	0.3092	0.7478	1.9599	1	2	3	186	232	180	213	811	0.23	0.29	0.22	0.26	0	0.48	0.9121	0.1882	0.8308	1.9834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	45	41	86	1205	1630	1608	2001	6444	0.19	0.25	0.25	0.31	0.56	0.8449	0.334	0.7322	1.9479	9	10	19	548	497	496	558	2099	0.26	0.24	0.24	0.26	0.5	0.8976	0.1467	0.868	1.9921	15654	31086	3117	11895	8247	30666	18383	14900	14092	9127	6139	12978	6496	5870	5073	21075	15888	16550	16418	10535	22746	11996	16389	14904	21476	17525	4320	7434	4660	14825	16880	10149	15226	1808	8017	25279	10179	16480	15962	21626	7122	3128	8352	14173	5247	11249	3164	6966	5060	7322	9848	5610	1644	12524	2915	6253	707	4986	4959	4602	7530	851	1521	16036
GCF_000002525.2	NC_006072	NC_006072.1	Yarrowia lipolytica CLIB122 chromosome F complete sequence.	1017435	1018036	981495	986294	102	4003362	0.25	0.25	0.25	0.25	0.49	0.9582	0.0027	0.9973	1.9998	683	737	1420	474258	438282	547913	509141	1969594	0.24	0.22	0.28	0.26	0.54	0.9068	0.1825	0.8408	1.9828	635	669	1304	450931	414627	524081	485064	1874703	0.25	0.22	0.27	0.26	0.53	0.8979	0.2247	0.8151	1.9685	0	14889	14733	13706	14470	57798	0.28	0.24	0.24	0.24	0.48	0.8672	0.2985	0.7573	1.9659	2	1	3	227	277	197	192	893	0.26	0.31	0.21	0.21	0	0.43	0.8893	0.1513	0.8638	1.9748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	33	45	78	1096	1533	1457	1850	5936	0.19	0.26	0.24	0.31	0.56	0.8545	0.3481	0.7209	1.95	7	15	22	676	605	622	697	2600	0.26	0.23	0.24	0.27	0.51	0.911	0.1149	0.8916	1.9971	13908	26944	2699	9839	7420	27617	15473	12971	12671	8260	5281	11397	5955	6045	4817	18573	13606	15405	13856	9468	20882	9819	14450	12599	19297	15311	3729	7067	4197	12921	14319	8173	12934	1607	7295	22253	9035	14196	13283	19674	7278	3233	7496	13282	4970	9186	3030	6187	4465	6437	9896	5636	1361	10311	3069	5753	628	5110	5157	3953	7037	808	1491	13737
NA	NC_002659	NC_002659.1	Yarrowia lipolytica mitochondrion; complete genome.	19413	17631	4909	5963	0	47916	0.41	0.37	0.1	0.12	0.23	0.8935	0.1451	0.8657	1.7697	49	0	49	15930	14798	4158	5164	40050	0.33	0.37	0.13	0.17	0.3	0.8642	0.234	0.801	1.852	21	0	21	7233	7447	2169	2446	19295	0.35	0.38	0.13	0.14	0.27	0.8532	0.2274	0.8079	1.8173	0	9204	7490	1854	2482	21030	0.44	0.36	0.09	0.12	0.21	0.8555	0.2374	0.7915	1.7249	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	26	0	26	588	688	282	372	1930	0.31	0.36	0.15	0.19	0.34	0.8671	0.2549	0.7834	1.8933	2	0	2	1922	1546	450	644	4562	0.42	0.34	0.1	0.14	0.24	0.8755	0.2936	0.7456	1.7818	144	33	173	152	96	36	168	310	14	23	427	120	189	1	140	71	110	14	160	259	2	214	8	154	5	18	40	21	354	91	109	53	6	430	161	13	32	9	64	17	23	6	313	5	17	112	9	143	61	84	5	4	733	81	32	66	17	1	3	1	105	70	89	7