GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_013265735.2	NC_048565	NC_048565.1	Oncorhynchus mykiss isolate Arlee chromosome 1; USDA_OmykA_1.1; whole genome shotgun sequence.	27201239	27211861	20638012	20692107	29137	95772356	0.28	0.28	0.22	0.22	0	0.43	0.9433	0.0015	0.9985	1.9863	894	830	1724	15168940	16013455	11967792	11940830	7688	55098705	0.28	0.29	0.21	0.22	0.43	0.9229	0.0846	0.9232	1.9796	41111	783	720	1503	748113	598930	791365	789337	2927745	0.26	0.21	0.26	0.27	0.53	0.8643	0.3216	0.743	1.952	0	11331893	12187419	8914759	8811820	7588	41253479	0.27	0.32	0.21	0.2	0	0.41	0.8771	0.2492	0.7977	1.9447	0	93	98	191	67857	64523	49206	54830	236416	0.29	0.25	0.22	0.25	0	0.46	0.867	0.3098	0.7576	1.9473	0	261198	273653	194019	195118	0	923988	0.28	0.32	0.19	0.21	0	0.4	0.8729	0.2544	0.7965	1.9332	0	8	3	11	138	187	200	273	798	0.17	0.23	0.25	0.34	0.59	0.8847	0.3131	0.7356	1.9536	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	20593	23776	7282	13907	16764	34881	17332	7668	19353	20343	8685	16646	17863	9263	13504	18326	16201	21853	14853	9116	32988	11540	19606	13116	33231	20865	9381	10836	6583	22074	16193	10356	14969	6462	20733	21931	17913	21400	12333	20462	19235	7640	14997	16115	14777	9324	16544	22945	14343	13511	5914	6966	4674	20338	21396	24429	4249	8126	8014	6064	15907	4294	14297	5918
GCF_013265735.2	NC_048566	NC_048566.1	Oncorhynchus mykiss isolate Arlee chromosome 2; USDA_OmykA_1.1; whole genome shotgun sequence.	29382201	29283403	22528857	22596052	16364	103806877	0.28	0.28	0.22	0.22	0	0.43	0.9427	0.0032	0.9968	1.9876	1208	1226	2434	16955858	18016375	13666328	13534686	8980	62182227	0.27	0.29	0.22	0.22	0.44	0.9173	0.1073	0.9047	1.9793	59236	1076	996	2072	968899	776623	1059212	1045772	3850506	0.26	0.21	0.26	0.27	0.53	0.8633	0.3256	0.7408	1.9508	0	12345884	13398465	9889429	9733803	8880	45376461	0.27	0.32	0.21	0.2	0	0.41	0.8685	0.2853	0.7743	1.9384	0	98	118	216	80231	79058	58350	63806	281445	0.28	0.26	0.21	0.24	0	0.46	0.8554	0.3187	0.7502	1.9465	0	266426	271905	194378	202084	0	934793	0.28	0.32	0.19	0.21	0	0.4	0.8634	0.2952	0.7701	1.9277	0	27	97	124	1845	2336	2352	3017	9550	0.19	0.25	0.25	0.32	0.56	0.8987	0.2452	0.7871	1.9728	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	27567	31350	9900	18901	21707	46855	22970	9589	26470	26477	10421	20857	23421	12974	17301	23990	21453	30730	19303	10847	45870	14672	26396	16419	44805	28366	13070	13596	8102	28056	21069	12198	19676	8773	28303	29305	23625	30076	16162	28032	25227	10475	18493	21086	18315	12202	23216	28546	18261	15776	7872	9420	6056	27669	28680	32317	4919	11013	11058	8261	19427	4685	17270	7554
GCF_013265735.2	NC_048567	NC_048567.1	Oncorhynchus mykiss isolate Arlee chromosome 3; USDA_OmykA_1.1; whole genome shotgun sequence.	24136194	24162546	18507066	18471816	33409	85311031	0.28	0.28	0.22	0.22	0	0.43	0.9451	0.0015	0.9985	1.987	959	896	1855	13001543	13773418	10358738	10321555	100	47455354	0.28	0.29	0.22	0.22	0.44	0.9214	0.0966	0.9135	1.9796	13217	864	795	1659	818475	657418	878996	878300	3233189	0.26	0.21	0.26	0.27	0.53	0.8638	0.3215	0.7435	1.9512	0	9306705	10084709	7338752	7270208	0	34000374	0.27	0.32	0.21	0.2	0	0.41	0.8735	0.2755	0.7804	1.9383	0	87	77	164	59282	57056	42659	47450	206447	0.28	0.26	0.22	0.24	0	0.45	0.8671	0.2992	0.7622	1.9522	0	192735	196976	137754	142819	0	670284	0.28	0.32	0.19	0.2	0	0.39	0.8616	0.2811	0.7797	1.9256	0	3	14	17	246	321	310	417	1294	0.19	0.24	0.24	0.32	0.56	0.8809	0.3157	0.737	1.9618	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	24262	26868	8085	15194	18785	37494	18319	8105	21998	23287	9411	17223	20585	11567	14914	19800	17604	25444	16370	9148	39018	12199	22067	13527	36174	22678	10744	13273	6916	23474	17395	10088	15934	7576	23829	23391	19624	24721	13450	22448	21390	8796	16048	17402	15515	9952	19319	24806	15215	13274	6707	8253	5654	22552	25162	27309	4435	8968	9668	7025	16393	4240	15343	6635
GCF_013265735.2	NC_048568	NC_048568.1	Oncorhynchus mykiss isolate Arlee chromosome 4; USDA_OmykA_1.1; whole genome shotgun sequence.	13283046	13281438	10145633	10130797	400	46841314	0.28	0.28	0.22	0.22	0	0.43	0.9453	0.0008	0.9992	1.987	416	438	854	6686555	7098808	5306350	5299065	0	24390778	0.28	0.29	0.22	0.22	0.43	0.9208	0.0912	0.9181	1.9788	17538	362	376	738	347948	275643	368836	370323	1362750	0.26	0.21	0.26	0.27	0.53	0.8647	0.3214	0.7429	1.9524	0	5043317	5451366	3983962	3947280	0	18425925	0.27	0.32	0.21	0.2	0	0.41	0.8753	0.2591	0.7919	1.9428	0	44	51	95	33079	34050	23826	25298	116253	0.28	0.27	0.21	0.23	0	0.45	0.8717	0.2714	0.7827	1.9519	0	104490	108725	74378	73757	0	361350	0.28	0.33	0.19	0.2	0	0.39	0.8719	0.2638	0.7887	1.9287	0	5	4	9	120	162	184	229	695	0.17	0.23	0.26	0.33	0.59	0.8788	0.2668	0.7724	1.9562	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10035	11532	3489	6350	7314	16932	7771	3493	8779	9654	3961	8164	8257	4757	5845	8849	7031	10666	7124	4251	15867	4917	8991	6445	15253	9854	4537	5161	3021	9927	7680	4531	6898	3157	9590	10883	8196	10133	6050	9971	8910	3829	6976	7215	6489	4633	7491	10508	6002	5383	3130	3482	2290	9228	10103	11254	1626	4039	4012	2955	6716	1613	6001	2786
GCF_013265735.2	NC_048569	NC_048569.1	Oncorhynchus mykiss isolate Arlee chromosome 5; USDA_OmykA_1.1; whole genome shotgun sequence.	28497088	28507392	21788473	21887709	117402	100798064	0.28	0.28	0.22	0.22	0	0.43	0.9439	0.0025	0.9976	1.9867	983	1026	2009	16500092	17550296	13284460	13107268	63503	60505619	0.28	0.29	0.22	0.22	0.43	0.9234	0.09	0.9183	1.9806	25382	876	903	1779	836156	660650	898387	901530	3296723	0.26	0.21	0.26	0.27	0.53	0.8645	0.3253	0.7408	1.95	0	12691356	13713693	10169574	9920078	62403	46557104	0.27	0.32	0.21	0.2	0	0.41	0.8748	0.2694	0.7847	1.9416	0	89	97	186	74098	71778	54567	57293	257736	0.29	0.26	0.22	0.23	0	0.45	0.8629	0.2827	0.7729	1.9502	0	223990	231618	167728	165801	0	789137	0.28	0.32	0.19	0.2	0	0.4	0.8729	0.25	0.7982	1.9347	0	15	9	24	316	427	423	572	1738	0.18	0.25	0.24	0.33	0.57	0.8909	0.3112	0.7406	1.9576	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23966	27262	8606	15619	19357	39452	20074	8121	21589	22859	9014	18219	19808	11065	14928	19946	17476	25643	16308	9415	38319	12773	21968	14615	38260	23940	10749	11669	7008	24827	18236	10809	16360	7419	23697	24821	19726	25111	13852	24001	22634	8953	16432	18864	15757	10313	19396	25671	15293	14064	6955	8415	5049	23130	24853	27402	4402	9651	9593	6993	16885	4228	15122	6573
GCF_013265735.2	NC_048570	NC_048570.1	Oncorhynchus mykiss isolate Arlee chromosome 6; USDA_OmykA_1.1; whole genome shotgun sequence.	28518242	28333956	21884260	21889605	470796	101096859	0.28	0.28	0.22	0.22	0	0.43	0.9439	0.0034	0.9966	1.9852	1012	1095	2107	15836888	16828525	12806063	12646370	386324	58504170	0.28	0.29	0.22	0.22	0.44	0.916	0.103	0.9081	1.9792	9138	871	879	1750	843596	676412	903403	908578	3331989	0.26	0.21	0.26	0.27	0.53	0.8638	0.3221	0.7434	1.9513	0	11903453	12891240	9593541	9345370	3879	43737483	0.27	0.32	0.21	0.2	0	0.41	0.8709	0.2698	0.7838	1.9423	0	114	121	235	96899	94288	68612	75775	335574	0.29	0.26	0.21	0.24	0	0.46	0.8549	0.3106	0.7564	1.9449	0	212576	222170	153285	162944	0	750975	0.28	0.32	0.18	0.22	0	0.4	0.8527	0.2984	0.768	1.9203	0	10	82	92	1533	1612	1464	2120	6729	0.23	0.24	0.22	0.31	0.53	0.8957	0.2237	0.8112	1.98	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	24135	26508	8575	16073	19369	41106	20281	8680	22446	23408	9295	18867	19937	10663	14888	20245	17985	26154	16533	9731	39069	12920	22034	14958	38368	24076	11223	11991	7710	24404	18380	11123	17023	7508	23744	25366	19714	24901	13786	23806	22582	8830	16435	19033	16267	10691	19009	25757	16136	14309	6654	7915	5204	23303	25066	27419	4157	9547	9144	7093	17098	4364	15519	6562
GCF_013265735.2	NC_048571	NC_048571.1	Oncorhynchus mykiss isolate Arlee chromosome 7; USDA_OmykA_1.1; whole genome shotgun sequence.	25677330	25786990	19711415	19704810	37746	90918291	0.28	0.28	0.22	0.22	0	0.43	0.9435	0.0023	0.9977	1.9871	912	1035	1947	13871083	14821915	11220244	11008183	16615	50938040	0.27	0.29	0.22	0.22	0.44	0.9183	0.0994	0.911	1.98	24004	811	881	1692	753334	598509	814720	818508	2985071	0.26	0.21	0.26	0.28	0.53	0.8629	0.3298	0.7378	1.9488	0	9929222	10864806	8039341	7795685	11040	36640094	0.26	0.32	0.22	0.2	0	0.42	0.8675	0.2933	0.7701	1.9371	0	76	88	164	58732	57495	43177	46369	205773	0.28	0.26	0.22	0.24	0	0.46	0.8567	0.3129	0.7532	1.9476	0	139977	142955	97723	98495	0	479150	0.28	0.32	0.19	0.21	0	0.4	0.8651	0.277	0.7833	1.9248	0	17	47	64	921	1067	1203	1482	4673	0.2	0.23	0.26	0.32	0.57	0.8797	0.1808	0.8397	1.9737	2	4	6	1027	1000	1058	1204	4289	0.24	0.24	0.24	0.28	0	0.52	0.8995	0.0949	0.9115	1.9953	21792	24207	7659	14110	16567	36669	17507	7324	19946	20505	8421	16470	17383	10355	12869	19127	15513	24272	15236	8489	34852	11832	20087	12769	34058	22114	9536	10493	6391	22716	17000	9549	15175	6958	20996	23120	18194	23057	13484	21615	20078	8357	14446	16864	14136	9805	18013	23084	13781	12049	6461	7765	4718	20405	22087	24036	3726	8980	8995	6606	14834	3867	12883	5882
GCF_013265735.2	NC_048572	NC_048572.1	Oncorhynchus mykiss isolate Arlee chromosome 8; USDA_OmykA_1.1; whole genome shotgun sequence.	25909133	25993279	19698595	19722893	298688	91622588	0.28	0.28	0.21	0.22	0	0.43	0.9438	0.0022	0.9978	1.9847	918	1175	2093	14097729	14821117	11099918	11017036	600	51036400	0.27	0.28	0.22	0.23	0.45	0.9201	0.0892	0.9184	1.9815	1323	822	809	1631	763414	603275	810064	817526	2994279	0.26	0.21	0.26	0.27	0.53	0.8641	0.329	0.7382	1.9504	0	10631669	11349915	8260510	8155399	100	38397593	0.27	0.32	0.21	0.2	0	0.41	0.875	0.2593	0.7917	1.9398	0	78	104	182	62983	61803	46918	48915	220619	0.28	0.26	0.22	0.23	0	0.46	0.8686	0.2687	0.7822	1.9559	0	164121	164753	122736	120326	0	571936	0.29	0.32	0.2	0.2	0	0.4	0.8755	0.2201	0.8176	1.9407	0	13	244	257	4106	4351	4767	5568	18792	0.22	0.23	0.25	0.3	0.55	0.8973	0.1208	0.8904	1.9868	0	2	2	475	458	498	560	1991	0.23	0.23	0.25	0.28	0	0.53	0.9123	0.0658	0.9369	1.9954	22347	25255	7412	14407	17004	35877	17114	7676	19656	21084	8417	16551	18491	10566	13094	18973	15730	23261	15400	8901	34142	11397	19519	13347	33878	21806	9714	11508	6512	22048	16607	9756	14812	6901	21529	23229	17642	21967	12667	21420	20135	8264	14925	16717	14125	9484	17229	23584	13932	12182	6815	7797	4845	20172	23096	24917	3934	8927	8965	6543	15268	3781	13809	6146
GCF_013265735.2	NC_048573	NC_048573.1	Oncorhynchus mykiss isolate Arlee chromosome 9; USDA_OmykA_1.1; whole genome shotgun sequence.	22514829	22413271	17213006	17222715	91816	79455637	0.28	0.28	0.22	0.22	0	0.43	0.9429	0.0025	0.9975	1.9867	1087	1041	2128	13516321	14152706	10834565	10579795	47556	49130943	0.26	0.28	0.22	0.24	0.46	0.9091	0.1493	0.8708	1.9744	305783	714	768	1482	681945	549499	751213	743385	2726042	0.26	0.21	0.26	0.27	0.53	0.8629	0.3286	0.7391	1.9485	0	9424730	10032318	7470551	7228853	25605	34182057	0.27	0.32	0.22	0.2	0	0.41	0.868	0.2921	0.7714	1.9338	0	104	103	207	61283	60267	44117	48639	214306	0.28	0.26	0.22	0.24	0	0.46	0.855	0.3102	0.7545	1.9468	6	139254	141361	100394	104679	0	485688	0.28	0.32	0.19	0.21	0	0.4	0.8531	0.3033	0.7618	1.9211	0	253	151	404	5207	7369	7068	9537	29181	0.18	0.25	0.24	0.33	0.57	0.879	0.3216	0.7277	1.9637	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	19469	21609	7308	13922	15266	31590	15870	6420	18822	18602	7291	14603	16294	9341	12063	17272	14466	22120	14105	7549	31323	11062	18772	11505	30617	20527	9076	9661	6023	20701	15104	8492	14166	6368	19627	20363	16614	21692	11711	19806	17806	7831	12504	15283	12854	8577	16926	20380	12996	10883	6156	7118	4425	19154	20490	22504	3673	8203	8387	6142	13806	3586	12172	5314
GCF_013265735.2	NC_048574	NC_048574.1	Oncorhynchus mykiss isolate Arlee chromosome 10; USDA_OmykA_1.1; whole genome shotgun sequence.	24803786	24953020	19027208	19016624	10500	87811138	0.28	0.28	0.22	0.22	0	0.43	0.9436	0.0033	0.9967	1.9871	1069	1167	2236	14384350	15186248	11446772	11330154	3200	52350724	0.26	0.28	0.23	0.23	0.46	0.9107	0.1325	0.8867	1.9731	41053	872	817	1689	766203	613539	810896	805881	2996519	0.26	0.21	0.26	0.27	0.53	0.8638	0.3292	0.7385	1.9498	1	10348863	11167032	8233658	8072603	3200	37825356	0.27	0.32	0.22	0.2	0	0.41	0.864	0.2981	0.7683	1.9315	0	168	169	337	72001	71382	53473	60596	257452	0.27	0.26	0.22	0.25	0	0.47	0.8632	0.2967	0.7683	1.9481	0	199793	200122	138468	152502	0	690885	0.28	0.31	0.18	0.22	0	0.4	0.8524	0.3181	0.7574	1.9207	3850	17	169	186	1670	3299	3861	4626	13456	0.13	0.25	0.29	0.34	0.63	0.851	0.4226	0.6725	1.9125	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21469	23987	7587	14989	16729	34919	17271	7868	19932	20654	8787	16657	19439	9908	13611	19213	16694	23213	15644	9056	34126	11432	20249	13362	33079	22491	9913	11651	6310	21553	16307	9702	15417	7060	22690	22585	17850	21768	12305	20559	18997	8137	15210	15833	14049	9819	17295	23843	14674	12097	6535	7700	5513	20525	22254	24431	3978	8692	8695	6585	16548	4144	14494	6019
GCF_013265735.2	NC_048575	NC_048575.1	Oncorhynchus mykiss isolate Arlee chromosome 11; USDA_OmykA_1.1; whole genome shotgun sequence.	24461857	24365401	18682877	18670573	100200	86280908	0.28	0.28	0.22	0.22	0	0.43	0.9443	0.0023	0.9977	1.9865	872	747	1619	12821658	13657609	10291062	10127701	17269	46915299	0.27	0.29	0.22	0.22	0.44	0.9203	0.105	0.9056	1.98	40245	650	663	1313	631617	506107	688141	686303	2512168	0.26	0.21	0.26	0.27	0.53	0.864	0.3217	0.7431	1.9522	0	9691326	10520095	7733333	7547907	7165	35499826	0.27	0.32	0.21	0.2	0	0.41	0.8733	0.2748	0.7811	1.941	0	82	68	150	58840	58325	43575	46850	207590	0.28	0.25	0.22	0.25	0	0.47	0.8609	0.3159	0.7496	1.9484	0	208535	216401	156794	158914	0	740644	0.28	0.32	0.2	0.2	0	0.4	0.8706	0.2579	0.7919	1.9353	0	133	7	140	2270	2753	2785	3535	11343	0.2	0.24	0.24	0.31	0.56	0.8532	0.3372	0.7243	1.9572	0	2	2	469	458	497	560	1984	0.23	0.23	0.25	0.28	0	0.54	0.9088	0.076	0.9273	1.9942	18153	20312	6319	12069	14299	30406	14841	6277	17047	17716	6800	13804	14944	8348	10946	15510	13350	19774	13013	7107	29480	9801	16978	10851	28655	18749	8484	8858	5557	18455	14160	8297	12653	5547	17645	19242	15065	19363	10615	18300	17151	7044	11990	14424	12253	7788	14866	19260	11922	10765	5335	6362	3817	17274	18672	20792	3226	7662	7142	5500	12525	3129	11330	5019
GCF_013265735.2	NC_048576	NC_048576.1	Oncorhynchus mykiss isolate Arlee chromosome 12; USDA_OmykA_1.1; whole genome shotgun sequence.	29208822	29137961	22191756	22235422	79295	102853256	0.28	0.28	0.22	0.22	0	0.43	0.943	0.0022	0.9978	1.9863	1207	1338	2545	17623284	18623205	13940297	13820048	19409	64026243	0.27	0.29	0.22	0.22	0.44	0.9206	0.0903	0.9175	1.9801	65510	1011	1117	2128	909277	729672	989006	984594	3612549	0.26	0.21	0.26	0.27	0.53	0.8635	0.3272	0.7397	1.9495	0	12235685	13231908	9656164	9478003	19309	44621069	0.27	0.32	0.21	0.2	0	0.41	0.8738	0.2715	0.7829	1.9406	0	112	106	218	77925	76909	57462	60038	272334	0.29	0.26	0.22	0.23	0	0.46	0.8718	0.2692	0.7794	1.9592	0	269198	271829	190017	193666	0	924710	0.29	0.32	0.2	0.2	0	0.39	0.8777	0.2207	0.8167	1.9374	0	62	65	127	1940	2299	2740	3343	10322	0.19	0.22	0.27	0.32	0.59	0.8981	0.1887	0.8321	1.9671	0	38	38	951	950	1216	1404	4521	0.21	0.21	0.27	0.31	0	0.58	0.8811	0.0733	0.9315	1.9795	26680	29939	8758	17012	20616	42894	21563	8883	24598	25459	10027	19545	22181	11507	16096	22313	19716	28262	19247	10534	42730	13813	24712	15490	41388	26001	11164	13231	7743	26884	20407	11894	17816	7874	25636	26967	22005	28033	15340	26504	24753	10340	17419	20844	17880	10586	21410	27432	16866	15068	7505	8837	5410	24806	27342	29734	4634	10841	10002	7673	18555	4872	17003	7102
GCF_013265735.2	NC_048577	NC_048577.1	Oncorhynchus mykiss isolate Arlee chromosome 13; USDA_OmykA_1.1; whole genome shotgun sequence.	20604572	20665967	15886671	15991835	182995	73332040	0.28	0.28	0.22	0.22	0	0.43	0.9414	0.0048	0.9952	1.9867	1155	1167	2322	12229147	12940394	9971878	9727524	70931	44939874	0.28	0.28	0.22	0.22	0.44	0.9138	0.1029	0.9071	1.9807	154197	977	972	1949	854199	657757	886390	899466	3297812	0.26	0.21	0.26	0.28	0.53	0.8624	0.336	0.7338	1.9476	0	8002352	8719191	6514844	6250879	4294	29491560	0.26	0.32	0.22	0.2	0	0.41	0.865	0.3017	0.7636	1.9345	18301	147	113	260	77577	77248	57454	60605	272884	0.28	0.26	0.22	0.24	0	0.46	0.8616	0.2887	0.7701	1.9532	0	248063	262921	188667	190163	0	889814	0.28	0.32	0.2	0.21	0	0.4	0.8598	0.2878	0.7738	1.9287	0	8	13	21	287	377	388	529	1581	0.18	0.24	0.25	0.33	0.58	0.8788	0.2987	0.7474	1.9571	0	53	53	3365	3327	3981	4703	15376	0.21	0.21	0.27	0.31	0	0.57	0.8855	0.0778	0.9274	1.9809	23166	27134	8302	15462	17226	42137	20079	7936	20914	20836	9825	20850	18932	10304	14311	21662	16972	27207	16889	9100	37500	12876	22667	14831	38058	24437	10269	11752	6522	25581	18712	11524	16124	8163	24256	24993	20258	25217	14306	22724	21971	8919	17571	17933	14924	11574	19090	28855	14174	13309	6674	8540	5918	22108	24076	25322	4296	9359	9612	6945	16682	4544	15521	6399
GCF_013265735.2	NC_048578	NC_048578.1	Oncorhynchus mykiss isolate Arlee chromosome 14; USDA_OmykA_1.1; whole genome shotgun sequence.	12315452	12221041	9392383	9326875	54330	43310081	0.28	0.28	0.22	0.22	0	0.43	0.9462	0.0073	0.9927	1.9862	372	419	791	6055053	6393617	4852311	4821399	36279	22158659	0.28	0.29	0.22	0.22	0.44	0.9186	0.0995	0.9107	1.9798	13339	332	375	707	305367	246346	322495	324913	1199121	0.26	0.21	0.26	0.27	0.53	0.8636	0.3294	0.7384	1.9505	0	4355992	4660899	3487501	3435539	0	15939931	0.27	0.32	0.22	0.2	0	0.41	0.8703	0.285	0.7746	1.9389	0	31	37	68	32796	32345	22774	26174	114089	0.29	0.26	0.21	0.24	0	0.45	0.8594	0.2843	0.7747	1.9518	0	158930	159339	116576	121494	0	556339	0.29	0.33	0.19	0.2	0	0.39	0.8682	0.2509	0.7974	1.929	0	4	4	8	104	148	138	194	584	0.18	0.25	0.24	0.33	0.57	0.8869	0.3606	0.7039	1.9561	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8531	9778	3313	5737	6402	14196	6949	3346	7890	7900	3807	6538	7280	4288	5267	8059	6725	9497	6557	3703	13637	4751	8172	5714	12815	8513	4073	4578	2872	8948	6844	3811	6259	3093	8397	9850	6851	9038	5402	8207	7646	3281	6379	6605	5429	4189	7234	9254	5503	4788	2665	3122	2114	7811	9015	9321	1390	3410	3556	2727	5865	1419	5049	2506
GCF_013265735.2	NC_048579	NC_048579.1	Oncorhynchus mykiss isolate Arlee chromosome 15; USDA_OmykA_1.1; whole genome shotgun sequence.	22911436	22884094	17803531	17847539	122917	81569517	0.28	0.28	0.22	0.22	0	0.44	0.9427	0.0018	0.9982	1.988	1137	771	1908	11955608	12833023	9880217	9706505	120517	44495870	0.25	0.28	0.23	0.25	0.47	0.9087	0.1771	0.8487	1.9722	55513	589	643	1232	573764	459449	627406	629044	2289663	0.26	0.21	0.26	0.28	0.53	0.8631	0.3278	0.7388	1.9496	0	9074207	9911678	7493651	7254679	78901	33813116	0.27	0.32	0.22	0.2	0	0.42	0.8697	0.2793	0.7789	1.9409	0	62	86	148	51975	52743	37433	41141	183292	0.28	0.27	0.21	0.24	0	0.45	0.8534	0.3051	0.7593	1.9498	0	108018	115961	79515	84011	0	387505	0.28	0.32	0.19	0.21	0	0.4	0.8598	0.2871	0.7727	1.9323	0	481	24	505	6289	9849	9202	12637	37977	0.16	0.26	0.24	0.33	0.58	0.8881	0.3834	0.6828	1.9503	0	2	2	68	73	79	88	308	0.22	0.24	0.26	0.29	0	0.54	0.8808	0.0893	0.9147	1.9932	16335	19094	5935	10565	12609	27953	13321	5489	15398	15982	6011	12312	13618	8209	9836	14321	12122	18337	12045	6508	26810	8871	15574	9727	25614	16652	7624	8062	4843	16615	12825	7223	11949	5081	15898	17967	14079	17788	9982	16426	15201	6487	11054	12932	10788	7253	13584	17940	10987	9288	5307	6197	3597	15963	17854	18701	2884	7290	7148	5227	10889	2670	9820	4729
GCF_013265735.2	NC_048580	NC_048580.1	Oncorhynchus mykiss isolate Arlee chromosome 16; USDA_OmykA_1.1; whole genome shotgun sequence.	22082783	22141464	17098469	16999179	219653	78541548	0.28	0.28	0.22	0.22	0	0.43	0.9439	0.0042	0.9958	1.9864	1084	1052	2136	13172310	13909053	10503231	10477202	65756	48127552	0.26	0.28	0.22	0.24	0.45	0.9172	0.1221	0.8907	1.9799	7148	757	746	1503	680512	553480	762731	756944	2753667	0.26	0.21	0.26	0.27	0.53	0.865	0.3186	0.7453	1.9509	0	9690315	10405747	7660478	7585158	65756	35407454	0.27	0.32	0.21	0.2	0	0.41	0.874	0.272	0.7831	1.9403	0	63	64	127	57769	57715	41368	43416	200268	0.29	0.26	0.21	0.24	0	0.45	0.8661	0.2977	0.7681	1.9466	0	185147	189098	134096	138111	0	646452	0.28	0.32	0.19	0.21	0	0.4	0.8706	0.265	0.7955	1.9283	0	252	232	484	7307	9206	8282	10630	35425	0.21	0.26	0.23	0.3	0.53	0.8967	0.2447	0.7855	1.9782	0	2	2	46	54	60	78	238	0.19	0.23	0.25	0.33	0	0.58	0.8682	0.2104	0.8105	1.9725	20197	21590	6834	13168	15683	32183	16256	6722	18770	19212	7480	14341	15688	9669	11908	17773	14561	22428	14527	8088	31832	10668	18984	11623	31201	20562	8518	9894	5809	20218	15175	8848	14251	5895	18882	21097	16733	21858	11931	21025	18717	8350	12571	16621	14015	8488	17300	19856	13005	10993	6333	7326	4109	19113	20589	22470	3422	8601	8432	6324	13867	3167	11986	5649
GCF_013265735.2	NC_048581	NC_048581.1	Oncorhynchus mykiss isolate Arlee chromosome 17; USDA_OmykA_1.1; whole genome shotgun sequence.	26946718	26956670	20522880	20625810	160344	95212422	0.28	0.28	0.22	0.22	0	0.43	0.9413	0.0027	0.9973	1.9861	1654	1229	2883	15662755	16509497	12454600	12368916	9249	57005017	0.27	0.28	0.22	0.23	0.45	0.9118	0.121	0.893	1.9789	105746	1083	1037	2120	939249	723109	981214	995989	3639561	0.26	0.21	0.26	0.28	0.53	0.8627	0.3383	0.7323	1.9482	479	10925971	11808577	8625778	8448189	8949	39817464	0.27	0.32	0.22	0.2	0	0.41	0.8654	0.2934	0.7708	1.9335	0	283	134	417	98297	95663	72182	76394	342536	0.28	0.26	0.22	0.24	0	0.45	0.8679	0.2608	0.7908	1.9561	0	225208	233467	172686	170330	0	801691	0.27	0.33	0.19	0.2	0	0.39	0.8606	0.3002	0.7629	1.9264	0	274	39	313	4619	5717	5874	7644	23854	0.19	0.24	0.25	0.32	0.57	0.8748	0.2606	0.7783	1.9688	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	25819	31847	9158	17615	19482	45932	22028	8914	23513	23443	10663	22867	20828	11995	16458	23510	18537	29324	17992	10199	41488	14358	24407	16274	41556	27826	11558	12539	7228	27763	20215	12256	18033	8490	26108	27623	22034	27520	15740	25884	24371	10085	19310	20027	16158	12800	21408	29972	15779	14420	7603	9367	6335	24304	26628	28646	4974	10791	10752	8216	18182	4728	16542	7073
GCF_013265735.2	NC_048582	NC_048582.1	Oncorhynchus mykiss isolate Arlee chromosome 18; USDA_OmykA_1.1; whole genome shotgun sequence.	20955627	20804119	16289466	16340000	268538	74657750	0.28	0.28	0.22	0.22	0	0.44	0.942	0.0052	0.9948	1.9871	803	976	1779	11689652	12426345	9636324	9422900	53354	43228575	0.27	0.28	0.22	0.22	0.45	0.9132	0.1246	0.8918	1.9781	276998	718	758	1476	677943	530124	742809	733831	2684707	0.26	0.2	0.26	0.28	0.54	0.8618	0.3369	0.7333	1.9464	0	8085584	8827023	6687521	6457301	50461	30107890	0.26	0.32	0.22	0.2	0	0.42	0.8643	0.3132	0.757	1.9347	0	73	66	139	52604	51604	38488	41483	184179	0.28	0.26	0.22	0.24	0	0.45	0.8608	0.3006	0.7607	1.9509	0	260947	271939	205666	188279	2893	929724	0.29	0.32	0.19	0.2	0	0.39	0.863	0.2574	0.7956	1.9275	0	9	133	142	2406	2644	2636	3404	11090	0.22	0.24	0.23	0.31	0.54	0.8815	0.2211	0.8127	1.9762	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18834	22132	7415	14024	15612	33355	16142	6216	18357	17779	7075	14942	16122	10050	11072	16358	14366	20712	13511	7144	30641	10965	18373	11171	30567	19779	9151	9077	5204	20542	14528	8489	13543	5923	20274	20325	16467	21170	11202	19006	17717	7845	12991	14967	11893	8673	16398	20530	11781	10518	6227	7544	4120	19462	20127	22641	3318	8161	8777	6092	13647	3436	10917	5549
GCF_013265735.2	NC_048583	NC_048583.1	Oncorhynchus mykiss isolate Arlee chromosome 19; USDA_OmykA_1.1; whole genome shotgun sequence.	18976666	18897782	14459289	14564557	338972	67237266	0.28	0.28	0.22	0.22	0.01	0.43	0.9378	0.0057	0.9943	1.9846	905	958	1863	10177822	10726504	8212046	8029185	1100	37146657	0.25	0.28	0.22	0.24	0.46	0.9085	0.156	0.8667	1.9706	18483	615	627	1242	613087	480888	645482	647138	2386595	0.26	0.21	0.26	0.27	0.53	0.8643	0.3237	0.7417	1.9514	0	7209661	7792684	5808222	5618257	1100	26429924	0.27	0.32	0.21	0.2	0	0.41	0.8732	0.2636	0.7887	1.9402	0	64	70	134	47381	47063	34310	37365	166119	0.28	0.26	0.22	0.24	0	0.46	0.8664	0.3028	0.7603	1.9507	0	172318	171607	123974	126051	0	593950	0.29	0.32	0.19	0.2	0	0.39	0.8741	0.2489	0.8009	1.9313	0	216	249	465	5986	9244	8303	9995	33528	0.18	0.28	0.25	0.3	0.55	0.873	0.3287	0.7306	1.9474	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17114	19701	6302	11470	13541	30194	14030	6201	15882	15763	7218	14132	14379	7827	10790	15425	12997	18802	12315	6892	27634	8990	15952	11115	26847	17643	7728	8762	4835	17122	13401	7705	12321	5656	17838	19115	14135	17741	9730	16690	15791	6478	13013	12889	10705	8175	13752	18461	11092	9450	4934	5980	4196	16492	17755	19342	3047	6979	6717	5212	12175	2916	9816	4543
GCF_013265735.2	NC_048584	NC_048584.1	Oncorhynchus mykiss isolate Arlee chromosome 20; USDA_OmykA_1.1; whole genome shotgun sequence.	13184402	13117628	10023343	10033256	258234	46616863	0.28	0.28	0.22	0.22	0.01	0.43	0.9443	0.003	0.997	1.9838	557	989	1546	6468282	6815977	5122157	5089781	0	23496197	0.24	0.27	0.23	0.26	0.49	0.9045	0.153	0.8648	1.9769	9384	364	362	726	357416	283312	385066	383259	1409053	0.26	0.21	0.26	0.27	0.53	0.8649	0.3183	0.745	1.9528	0	4890741	5249105	3840069	3781105	0	17761020	0.27	0.32	0.21	0.2	0	0.41	0.8773	0.2592	0.7917	1.9414	0	53	52	105	45361	43543	33369	34867	157140	0.28	0.26	0.22	0.24	0	0.46	0.8722	0.2553	0.7923	1.9582	0	157988	172986	116818	122644	0	570436	0.28	0.33	0.19	0.2	0	0.39	0.8695	0.249	0.7987	1.9291	0	31	303	334	5088	6630	5671	7995	25384	0.2	0.26	0.22	0.32	0.54	0.8886	0.3088	0.7375	1.9735	107	268	375	9241	10091	12092	14937	46361	0.2	0.22	0.26	0.32	0	0.59	0.8757	0.1588	0.8544	1.9731	9985	11744	3564	6755	7933	16938	8571	3632	9092	9736	4019	8031	8212	4714	6042	9199	7654	10848	7163	4064	16089	5644	9843	6461	16058	10263	4682	4998	3028	10370	7643	4875	7088	3115	9891	11084	8616	11008	5898	10187	9246	3811	7266	7863	6800	4586	8407	10659	6459	5800	3087	3521	2188	9680	10438	11620	1722	4201	4050	3119	7373	1672	6278	2834
GCF_013265735.2	NC_048585	NC_048585.1	Oncorhynchus mykiss isolate Arlee chromosome 21; USDA_OmykA_1.1; whole genome shotgun sequence.	18126048	18199585	14294614	14248579	67136	64935962	0.28	0.28	0.22	0.22	0	0.44	0.9249	0.0036	0.9964	1.989	966	962	1928	10181319	10938610	8542619	8340022	59259	38061829	0.25	0.28	0.22	0.25	0.47	0.903	0.1823	0.8444	1.9753	7364	575	579	1154	508362	410181	565645	560259	2044447	0.26	0.21	0.26	0.28	0.54	0.8629	0.3293	0.7386	1.9487	0	7515620	8234017	6284184	6043716	10013	28087550	0.26	0.32	0.22	0.2	0	0.42	0.8632	0.3098	0.759	1.9352	0	80	75	155	52541	52625	38712	43850	187728	0.27	0.27	0.21	0.25	0	0.46	0.8512	0.3308	0.7435	1.9452	0	120580	122574	86739	92992	0	422885	0.27	0.32	0.18	0.23	0	0.41	0.8515	0.3434	0.7351	1.9246	0	300	299	599	8960	11335	9676	14010	43981	0.21	0.26	0.22	0.32	0.53	0.8766	0.2888	0.7596	1.9711	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14001	16488	5476	9803	10779	24407	11550	4840	14150	14237	5136	11025	11967	7492	8778	12758	10786	16283	10935	5514	23329	8093	14654	8692	22206	15158	6943	6994	4317	15395	11269	6277	10908	4822	14453	16016	12476	16886	8826	14744	12971	5957	9367	11243	9380	6607	12771	15797	10024	8031	4901	5629	3307	14552	15592	16574	2693	6503	6963	4791	9956	2475	8930	4282
GCF_013265735.2	NC_048586	NC_048586.1	Oncorhynchus mykiss isolate Arlee chromosome 22; USDA_OmykA_1.1; whole genome shotgun sequence.	14926467	14918072	11326760	11290411	12601	52474311	0.28	0.28	0.22	0.22	0	0.43	0.9454	0.0019	0.9981	1.9861	434	568	1002	7633938	8059568	6037289	5987508	10301	27728604	0.27	0.29	0.22	0.22	0.44	0.9146	0.1152	0.898	1.9793	19690	366	399	765	421908	338944	433306	439975	1634133	0.26	0.21	0.26	0.27	0.53	0.8652	0.3207	0.7442	1.9519	0	5715797	6117962	4486377	4417465	0	20737601	0.27	0.32	0.21	0.2	0	0.41	0.8745	0.2569	0.7931	1.9394	0	33	143	176	25985	27472	21264	21764	96485	0.26	0.28	0.23	0.24	0	0.47	0.8663	0.3095	0.7512	1.9584	0	61810	63931	43686	46115	0	215542	0.29	0.32	0.19	0.21	0	0.4	0.8671	0.3013	0.7614	1.9284	0	31	20	51	715	985	864	1155	3719	0.19	0.26	0.23	0.31	0.54	0.865	0.309	0.7482	1.9652	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12833	13591	4299	7849	9523	18302	8980	4423	10774	11952	5113	9031	11302	5582	7572	9987	9132	12978	8271	4926	19120	6123	10359	6947	18227	11111	5422	7813	3708	11753	8917	5204	7854	4178	12256	11575	9706	11663	6613	10470	10608	3957	8542	8523	7660	5146	8951	13316	7842	6865	3657	4085	3502	10541	13109	13924	2305	4496	4799	3140	8896	2278	7914	2958
GCF_013265735.2	NC_048587	NC_048587.1	Oncorhynchus mykiss isolate Arlee chromosome 23; USDA_OmykA_1.1; whole genome shotgun sequence.	17897894	17843407	13539158	13599519	400	62880378	0.28	0.28	0.22	0.22	0	0.43	0.9334	0.0037	0.9963	1.9865	455	529	984	10100360	10676362	7930334	7896091	0	36603147	0.28	0.29	0.21	0.22	0.44	0.9179	0.1	0.9099	1.9802	14633	395	403	798	408079	323319	429434	431939	1592771	0.26	0.21	0.25	0.27	0.53	0.8646	0.3206	0.7438	1.9524	0	8041684	8610141	6275404	6235056	0	29162285	0.27	0.32	0.21	0.2	0	0.41	0.8734	0.2534	0.7958	1.9429	0	54	43	97	36369	35062	26507	28435	126373	0.28	0.26	0.22	0.24	0	0.46	0.8609	0.284	0.7701	1.9555	0	176988	181171	128109	130427	0	616695	0.28	0.31	0.19	0.21	0	0.4	0.8626	0.2424	0.8008	1.9413	0	2	79	81	1301	1663	1275	1689	5928	0.22	0.28	0.22	0.29	0.5	0.8906	0.263	0.7693	1.9836	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11421	13114	4209	7682	9132	18920	9594	4141	10141	11169	4573	9224	9424	4983	6875	10355	8625	11879	7874	4779	18024	6577	10640	7239	18278	11344	5313	6047	3555	12266	8801	5399	8206	3954	11472	11992	9605	11879	6562	10921	10494	4063	8184	8689	7584	5253	9353	12677	7508	6775	3297	3813	2627	11533	11920	13210	2222	4395	4431	3393	8374	2147	7092	3099
GCF_013265735.2	NC_048588	NC_048588.1	Oncorhynchus mykiss isolate Arlee chromosome 24; USDA_OmykA_1.1; whole genome shotgun sequence.	12872075	12806916	10147741	10047591	56483	45930806	0.28	0.28	0.22	0.22	0	0.44	0.946	0.0075	0.9925	1.989	426	476	902	7181232	7687500	5974090	5868796	46017	26757635	0.27	0.29	0.22	0.22	0.44	0.9193	0.107	0.9045	1.9805	4208	362	424	786	365982	307571	418180	408924	1500657	0.25	0.21	0.26	0.28	0.54	0.8638	0.3117	0.7503	1.9514	0	5446075	5909787	4492411	4391798	46017	20286088	0.26	0.32	0.22	0.2	0	0.42	0.8679	0.2948	0.7685	1.9379	0	49	34	83	36363	35848	27855	29364	129430	0.28	0.25	0.22	0.24	0	0.47	0.8668	0.2783	0.7758	1.9572	0	105849	104457	75631	78171	0	364108	0.28	0.33	0.19	0.2	0	0.39	0.871	0.2575	0.7922	1.9315	0	9	7	16	206	300	297	413	1216	0.17	0.25	0.24	0.34	0.58	0.889	0.353	0.7071	1.9507	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10685	11248	3984	6813	8330	17452	8947	3789	10414	10843	3780	7164	9134	5218	6464	9228	8112	12382	8156	4515	17997	5827	10567	6074	17040	11047	5102	5247	3427	10674	8565	5109	7674	3347	10493	11251	9097	12240	6555	11130	10075	4317	6488	8633	7456	4715	9457	10667	7417	6095	3393	3999	2417	10888	10791	12612	1932	4733	4565	3393	7329	1768	6660	2954
GCF_013265735.2	NC_048589	NC_048589.1	Oncorhynchus mykiss isolate Arlee chromosome 25; USDA_OmykA_1.1; whole genome shotgun sequence.	13382568	13455226	10338846	10310643	55419	47542702	0.28	0.28	0.22	0.22	0	0.43	0.9449	0.0041	0.9959	1.9871	435	427	862	6877099	7294563	5583575	5487095	5215	25247547	0.28	0.29	0.22	0.21	0.43	0.9208	0.0959	0.9148	1.9754	1587	387	374	761	392548	308250	410837	411770	1523405	0.26	0.21	0.26	0.27	0.53	0.8632	0.3249	0.741	1.9516	0	5008052	5438256	4058368	3935529	5215	18445420	0.27	0.32	0.21	0.2	0	0.41	0.8711	0.264	0.7889	1.9396	0	39	44	83	30924	30919	23750	23637	109230	0.29	0.26	0.23	0.23	0	0.46	0.8732	0.255	0.7911	1.9621	0	188800	196613	137250	138592	0	661255	0.28	0.34	0.19	0.19	0	0.38	0.8824	0.2175	0.8182	1.9366	0	4	0	4	60	72	81	102	315	0.19	0.23	0.26	0.32	0.58	0.8644	0.2419	0.7922	1.9641	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11169	12610	3835	7309	8862	19528	8946	4134	10252	10280	4678	8874	9386	4812	7084	9567	8386	11602	7658	4483	17857	5487	10353	7092	17447	10949	5176	5844	3353	10876	8698	5006	7700	3560	11026	11614	8945	11209	6146	10474	10738	3848	8175	8017	7144	4866	8599	11882	6925	6336	2886	3589	2552	10517	11970	12844	1993	4261	4130	2991	7798	1811	6505	2826
GCF_013265735.2	NC_048590	NC_048590.1	Oncorhynchus mykiss isolate Arlee chromosome 26; USDA_OmykA_1.1; whole genome shotgun sequence.	14412158	14278596	11202286	11209833	10680	51113553	0.28	0.28	0.22	0.22	0	0.44	0.9317	0.005	0.995	1.989	544	463	1007	7797579	8394408	6479990	6378254	6039	29056270	0.27	0.29	0.22	0.22	0.44	0.914	0.1106	0.9015	1.9801	4417	416	401	817	387842	307975	419357	414935	1530109	0.26	0.21	0.26	0.27	0.53	0.8632	0.3237	0.7419	1.9513	0	5994782	6601374	4996529	4860341	5539	22458565	0.27	0.32	0.22	0.2	0	0.42	0.8641	0.28	0.7773	1.9412	0	56	53	109	38142	37188	29188	29289	133807	0.28	0.27	0.22	0.23	0	0.46	0.8474	0.3354	0.7413	1.9382	0	108216	110497	80861	75202	0	374776	0.27	0.31	0.2	0.21	0	0.41	0.8386	0.3393	0.743	1.9149	0	67	3	70	1105	1224	1174	1615	5118	0.22	0.24	0.23	0.32	0.54	0.915	0.2088	0.8185	1.981	0	1	1	34	36	40	44	154	0.22	0.23	0.26	0.29	0	0.55	0.887	0.0762	0.9268	1.9929	10983	12464	3942	7137	8597	18281	9136	3721	10238	10619	4231	8123	8829	5263	6825	9588	7975	11978	7677	4479	17985	5891	9950	6664	18128	11222	5511	5461	3283	10895	8436	4998	7807	3398	11127	12086	9315	11538	6756	11107	10523	4141	7521	8465	7412	4707	8487	11505	7511	6592	3362	3874	2303	10758	11355	12631	1953	4682	4353	3462	8456	2048	6754	3014
GCF_013265735.2	NC_048591	NC_048591.1	Oncorhynchus mykiss isolate Arlee chromosome 27; USDA_OmykA_1.1; whole genome shotgun sequence.	14422988	14478927	11314891	11320604	18827	51556237	0.28	0.28	0.22	0.22	0	0.44	0.9468	0.0022	0.9978	1.9891	494	495	989	8584824	9203068	7080963	7001849	113	31870817	0.27	0.29	0.22	0.22	0.44	0.9198	0.1028	0.9084	1.9805	25328	424	442	866	400687	333804	453521	443101	1631113	0.25	0.21	0.26	0.28	0.54	0.8634	0.3187	0.746	1.9499	0	6359664	6946416	5264820	5163842	113	23734855	0.26	0.32	0.22	0.2	0	0.42	0.8721	0.2842	0.7751	1.9395	0	48	43	91	30248	29948	22337	24020	106553	0.28	0.25	0.21	0.25	0	0.46	0.8522	0.3391	0.7414	1.9396	0	105564	111209	78481	79246	0	374500	0.28	0.32	0.19	0.21	0	0.4	0.8635	0.2885	0.7757	1.9265	0	13	4	17	231	306	306	420	1263	0.18	0.24	0.24	0.33	0.57	0.8927	0.3015	0.743	1.9614	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11440	12528	4153	7993	9302	18740	9673	3968	11383	11737	4308	7969	10625	5451	7362	9989	9106	13322	8865	4799	19391	6339	11473	7119	18064	12170	5204	5715	3504	11709	9262	5214	8625	3722	12067	12351	9756	12974	7021	12349	10856	4723	7172	9426	7997	5054	10143	11526	7993	6738	3626	4136	2578	11537	11893	13666	2063	4943	4867	3612	7687	1934	7147	3109
GCF_013265735.2	NC_048592	NC_048592.1	Oncorhynchus mykiss isolate Arlee chromosome 28; USDA_OmykA_1.1; whole genome shotgun sequence.	12473882	12412307	9429447	9398809	2238	43716683	0.29	0.28	0.22	0.21	0	0.43	0.9446	0.0041	0.9959	1.9861	657	674	1331	7040321	7414850	5538679	5488768	1238	25483856	0.25	0.28	0.23	0.24	0.47	0.9146	0.1265	0.8856	1.9802	13367	406	424	830	409147	318317	437432	444760	1609656	0.26	0.21	0.26	0.27	0.53	0.8646	0.3283	0.7383	1.9509	0	5242228	5618807	4070634	4006515	1238	18939422	0.27	0.32	0.21	0.2	0	0.41	0.874	0.2663	0.7869	1.9394	0	42	43	85	27483	27378	19610	21963	96434	0.28	0.27	0.22	0.24	0	0.46	0.8669	0.2666	0.785	1.9561	0	77711	79184	56782	56734	0	270411	0.28	0.32	0.2	0.2	0	0.4	0.8726	0.2461	0.8015	1.9351	0	200	200	400	5828	7227	7422	9173	29650	0.2	0.24	0.25	0.31	0.56	0.8922	0.2144	0.808	1.9791	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12098	13809	3859	7513	9169	19559	9329	3958	10635	11281	4501	8683	9497	5685	7147	10317	8349	12482	8068	4497	18317	6494	10601	6901	18960	11812	4974	5723	3314	12147	8657	5076	8056	3579	11322	12530	9307	11927	6810	11757	10857	4507	7949	9237	7728	4811	9604	12813	7209	6676	3727	4442	2474	10869	12869	13341	1968	4920	5121	3579	8224	1910	7079	3351
GCF_013265735.2	NC_050570	NC_050570.1	Oncorhynchus mykiss isolate Arlee chromosome 30; USDA_OmykA_1.1; whole genome shotgun sequence.	13145815	13189856	10009541	9952229	30152	46327593	0.28	0.28	0.22	0.21	0	0.43	0.9361	0.0045	0.9955	1.9859	456	542	998	7328440	7742249	5821803	5774499	0	26666991	0.28	0.3	0.21	0.22	0.43	0.9183	0.1048	0.9058	1.9775	4810	388	379	767	362546	288769	388372	388642	1428329	0.26	0.21	0.26	0.27	0.53	0.8642	0.3224	0.7423	1.9526	0	5556587	5977891	4398351	4316563	0	20249392	0.27	0.32	0.21	0.2	0	0.41	0.8726	0.273	0.7816	1.9411	0	56	153	209	38127	39523	28129	30989	136768	0.27	0.29	0.2	0.24	0	0.44	0.8719	0.294	0.7606	1.9489	133	119272	123394	85129	88843	0	416638	0.28	0.32	0.19	0.22	0	0.4	0.8728	0.2638	0.791	1.9343	0	10	3	13	177	228	229	308	942	0.19	0.24	0.24	0.33	0.57	0.8872	0.2938	0.7547	1.957	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10359	12134	3948	6701	8076	17880	8881	3492	9451	9484	3855	8034	8687	4547	6414	8769	7901	11336	7248	4126	17209	5377	9895	6551	16674	10465	4572	5055	3071	10560	8045	4390	7268	3308	10212	11041	8730	10721	6153	10201	9540	3813	6982	7778	6773	4668	8069	10963	6934	5947	2859	3397	2234	9832	10569	11665	1753	3974	3983	3143	7303	1765	6241	2631
GCF_013265735.2	NC_050571	NC_050571.1	Oncorhynchus mykiss isolate Arlee chromosome 31; USDA_OmykA_1.1; whole genome shotgun sequence.	12477835	12415230	9585463	9623419	6664	44108611	0.28	0.28	0.22	0.22	0	0.44	0.9282	0.0045	0.9955	1.9879	612	552	1164	6080443	6404235	4935210	4851844	5064	22276796	0.26	0.26	0.23	0.25	0.48	0.8987	0.1345	0.8813	1.9784	21249	326	373	699	316040	257119	334418	334711	1242288	0.26	0.21	0.26	0.27	0.53	0.8637	0.3307	0.738	1.9499	0	4398049	4694824	3551801	3467002	5064	16116740	0.26	0.32	0.22	0.2	0	0.42	0.867	0.2923	0.7704	1.9381	0	38	25	63	23540	24234	17198	18585	83557	0.28	0.26	0.21	0.25	0	0.46	0.8622	0.3202	0.7521	1.9421	0	92054	90796	63563	67217	0	313630	0.29	0.29	0.19	0.22	0	0.42	0.8672	0.2746	0.7871	1.9298	0	243	148	391	6363	6045	6809	9174	28391	0.22	0.21	0.24	0.32	0.56	0.8666	0.1848	0.8373	1.9751	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8772	9894	3402	5950	6603	14463	7326	3609	8431	8007	4005	7063	7473	4360	5464	8402	7339	9839	6604	3999	13890	5245	8525	6185	13288	8777	4100	4661	3134	9297	6970	3958	6400	3268	8729	10324	7064	9437	5452	8336	8096	3354	6605	6693	5515	4453	7317	9448	5637	4816	2810	3159	2371	8272	9096	9853	1520	3551	3734	2889	5883	1499	5162	2529
GCF_013265735.2	NC_050572	NC_050572.1	Oncorhynchus mykiss isolate Arlee chromosome 32; USDA_OmykA_1.1; whole genome shotgun sequence.	11756043	11821517	9124477	9086610	48822	41837469	0.28	0.28	0.22	0.22	0	0.44	0.9296	0.0049	0.9952	1.9874	435	430	865	6109680	6510537	4942129	4845407	0	22407753	0.27	0.29	0.22	0.22	0.44	0.9191	0.108	0.9045	1.9787	1260	382	374	756	343200	261442	360982	367335	1332959	0.25	0.2	0.26	0.28	0.54	0.8617	0.3356	0.7339	1.9465	0	4413463	4812781	3557093	3434009	0	16217346	0.27	0.32	0.21	0.2	0	0.41	0.8745	0.2763	0.7803	1.9397	0	40	43	83	27917	28417	20991	21554	98879	0.28	0.26	0.22	0.24	0	0.46	0.8641	0.3049	0.7587	1.9509	0	76405	79803	57010	56505	0	269723	0.27	0.32	0.2	0.2	0	0.4	0.8662	0.2848	0.7726	1.9345	0	6	10	16	178	280	287	417	1162	0.15	0.24	0.25	0.36	0.61	0.8945	0.4059	0.6634	1.9373	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10246	12033	3309	6376	7704	17193	7661	3616	8994	8590	3550	9096	7634	4841	5659	8261	6947	10548	6430	3765	14679	5702	8807	6118	15240	9582	4406	4977	2660	10174	7342	4354	6447	2975	9514	10588	7748	10395	5537	9605	8482	3887	7522	7676	5714	4033	7938	9960	5594	5117	3160	3602	1979	9250	10016	10564	1471	4130	4164	2839	7046	1368	5043	2541
GCF_013265735.2	NC_048593	NC_048593.1	Oncorhynchus mykiss isolate Arlee chromosome Y; USDA_OmykA_1.1; whole genome shotgun sequence.	13480651	13497881	10340651	10414814	14344	47748341	0.28	0.28	0.22	0.22	0	0.43	0.942	0.0042	0.9958	1.9875	747	572	1319	7019526	7444410	5675175	5623160	100	25762371	0.26	0.28	0.23	0.23	0.46	0.9076	0.1276	0.8869	1.9791	16016	422	426	848	360574	296003	399553	397663	1453793	0.26	0.21	0.26	0.27	0.53	0.8639	0.3254	0.7409	1.9509	0	5299048	5699896	4242888	4180356	100	19422288	0.26	0.32	0.22	0.2	0	0.42	0.8664	0.31	0.7596	1.9338	0	213	77	290	50809	51768	37815	40480	180872	0.26	0.28	0.22	0.24	0	0.46	0.8613	0.2733	0.7778	1.9602	0	91542	94375	67219	68363	0	321499	0.28	0.32	0.19	0.21	0	0.4	0.8591	0.293	0.767	1.9254	0	10	44	54	744	992	968	1263	3967	0.19	0.25	0.24	0.32	0.56	0.8779	0.2812	0.7651	1.9649	95	16	111	3393	3662	4396	5262	16713	0.19	0.22	0.27	0.32	0	0.59	0.8862	0.1504	0.8614	1.9706	10519	11775	3623	7070	7923	17226	8682	3723	9860	10286	3763	7492	8450	4886	6277	8811	7976	11548	7666	4225	17292	5943	9725	6492	16550	10997	4747	5430	3241	10924	8416	4727	7534	3289	9907	11542	8800	11469	6698	10822	9543	4222	6680	8299	7124	4595	8864	10879	6901	5951	2988	3807	2278	10255	10536	11568	1774	4192	4244	3236	6888	1824	6348	2850
NA	NC_001717	NC_001717.1	Oncorhynchus mykiss mitochondrion complete genome.	4636	4358	4811	2837	0	16642	0.28	0.26	0.29	0.17	0	0.46	0.9392	0.289	0.7649	1.9726	12	1	13	2939	3253	3365	1862	0	11419	0.25	0.29	0.29	0.17	0.46	0.8997	0.4273	0.6738	1.9473	18	8	1	9	2027	2222	2302	1306	7857	0.25	0.28	0.29	0.18	0.47	0.8971	0.4478	0.6624	1.9425	11	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	6	3	9	180	173	142	149	644	0.28	0.27	0.22	0.23	0.45	0.8867	0.202	0.8242	1.97	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	28	9	67	55	69	16	56	93	39	13	23	52	40	11	7	58	36	28	76	90	27	27	98	13	9	90	132	21	27	61	77	99	36	71	77	28	59	56	44	103	34	6	41	51	13	36	38	0	3	18	5	18	72	30	0	41	2	7	15	5	61	7	65	30