GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	fr_gene_N Frequency of 'N' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_005508785.1	NC_042493	NC_042493.1	Acyrthosiphon pisum isolate AL4f chromosome X; pea_aphid_22Mar2018_4r6ur; whole genome shotgun sequence.	43647594	43621745	18038244	18038216	9199053	132544852	0.33	0.33	0.14	0.14	0.07	0.27	0.9391	0.0003	0.9997	1.8386	2329	2407	4736	15658633	15783137	6533890	6604045	1175013	45754718	0.34	0.33	0.15	0.16	0.01	0.31	0.8987	0.0981	0.9107	1.8703	24992	1926	2047	3973	1730160	1403687	941659	1030289	0	5105795	0.35	0.28	0.17	0.2	0.37	0.866	0.2888	0.7653	1.9045	45	9606384	9931353	3800995	3799482	803182	27941396	0.36	0.41	0.11	0.12	0.01	0.23	0.8264	0.2448	0.8025	1.7337	311	258	569	219298	210770	103160	103413	636641	0.35	0.32	0.16	0.17	0	0.33	0.8627	0.2382	0.8021	1.8852	1	553526	573767	204026	203733	42589	1577641	0.35	0.41	0.11	0.12	0.01	0.23	0.8281	0.2457	0.801	1.7405	34	36	70	910	1148	1377	1710	5145	0.18	0.22	0.27	0.33	0.6	0.8835	0.2399	0.7899	1.9534	0	8	16	24	1506	1462	1910	2141	7019	0.23	0.22	0.27	0.28	0.55	0.8859	0.0456	0.9559	1.9872	43729	37091	25801	27646	23726	20783	21076	49854	14299	24633	60253	56148	33864	18667	26593	36837	22384	23562	25220	44822	21575	21397	12485	42269	24469	18902	20157	36312	37091	24703	25050	21028	17118	42615	38694	26596	19783	8245	24574	15065	16605	9135	87391	14490	17893	30332	8605	30686	28090	29219	16255	12324	43025	14556	12666	26973	11938	11473	13879	15470	46799	24012	22326	16412
GCF_005508785.1	NC_042494	NC_042494.1	Acyrthosiphon pisum isolate AL4f chromosome A1; pea_aphid_22Mar2018_4r6ur; whole genome shotgun sequence.	57568491	57537252	24316694	24294521	7023687	170740645	0.34	0.34	0.14	0.14	0.04	0.28	0.9397	0.0007	0.9993	1.8584	3242	3237	6479	31560542	32062834	13446752	13594965	2120703	92785796	0.34	0.34	0.15	0.16	0.01	0.3	0.9032	0.0824	0.9243	1.8695	90396	2845	2797	5642	2780392	2276711	1582446	1721644	13	8361206	0.34	0.28	0.18	0.2	0.38	0.8662	0.2853	0.768	1.9109	4	17843856	18525321	7244001	7265243	1190818	52069239	0.35	0.41	0.11	0.12	0.01	0.23	0.8237	0.2592	0.7924	1.7348	221	251	472	190516	186196	92166	93655	562533	0.34	0.32	0.17	0.17	0	0.34	0.8603	0.2585	0.7923	1.874	0	529916	540314	215436	217031	42357	1545054	0.35	0.39	0.12	0.13	0.01	0.25	0.8443	0.2046	0.8316	1.7766	94	50	144	2022	2443	2732	3441	10638	0.19	0.23	0.26	0.32	0.58	0.8877	0.2775	0.7665	1.9584	0	4	8	12	346	329	389	403	1467	0.24	0.23	0.26	0.27	0.54	0.8844	0.0428	0.9585	1.993	70239	60889	41489	44461	39021	33615	36654	78943	25049	41643	91139	93485	55055	31008	41392	59716	36985	41280	41676	70105	37768	35841	21849	66040	40130	32327	31958	60014	58713	40890	43011	33995	31370	65247	61292	43908	31804	14665	43065	28222	27783	14894	135833	25753	28166	51224	14407	51196	44201	45128	28154	21000	68957	24640	20920	46523	20936	19900	25327	25020	76442	38628	37982	26696
GCF_005508785.1	NC_042495	NC_042495.1	Acyrthosiphon pisum isolate AL4f chromosome A2; pea_aphid_22Mar2018_4r6ur; whole genome shotgun sequence.	40105054	40196330	16902825	16909570	5427984	119541763	0.34	0.34	0.14	0.14	0.05	0.28	0.9394	0.0013	0.9987	1.8555	2320	2268	4588	20824578	21157407	8832293	8933818	1485034	61233130	0.34	0.34	0.15	0.15	0.01	0.3	0.903	0.0799	0.9263	1.8662	133231	2015	1957	3972	1932161	1596037	1080392	1182447	1	5791038	0.34	0.28	0.18	0.2	0.38	0.8662	0.2854	0.7679	1.9095	0	12164393	12626090	4912184	4929688	891417	35523772	0.36	0.41	0.11	0.12	0.01	0.23	0.8226	0.2581	0.7926	1.7324	202	200	402	172505	168335	81807	81803	504450	0.35	0.32	0.16	0.17	0	0.33	0.8583	0.2595	0.7924	1.8687	0	372023	386825	146697	147058	26788	1079391	0.35	0.4	0.11	0.12	0.01	0.24	0.8329	0.2252	0.816	1.7581	34	33	67	881	1049	1339	1646	4915	0.18	0.21	0.27	0.33	0.6	0.8841	0.2221	0.8085	1.9498	0	7	2	9	257	247	277	290	1071	0.24	0.23	0.26	0.27	0.53	0.8856	0.0507	0.9508	1.9969	48977	41172	28886	30959	26648	22898	25206	56410	17277	29231	64685	63810	37978	21243	28932	40511	25649	27832	28665	49880	25727	24517	15588	46527	27328	21985	22013	41802	41812	28514	29370	24353	21305	46008	42380	29981	21079	9854	28658	18655	18786	10351	94951	17134	19216	36206	9721	35814	30951	31809	19093	13890	48668	17003	13859	30681	14708	13351	16522	17583	53068	28336	27126	19088
GCF_005508785.1	NC_042496	NC_042496.1	Acyrthosiphon pisum isolate AL4f chromosome A3; pea_aphid_22Mar2018_4r6ur; whole genome shotgun sequence.	14493477	14441951	6108431	6090484	1199303	42333646	0.34	0.34	0.14	0.14	0.03	0.29	0.939	0.0033	0.9968	1.8642	882	923	1805	8405934	8560173	3590699	3629934	352517	24539257	0.34	0.34	0.15	0.16	0.01	0.3	0.9046	0.0764	0.9289	1.8707	8137	776	812	1588	800597	657064	468312	509471	1	2435445	0.34	0.28	0.18	0.21	0.39	0.867	0.2832	0.7692	1.9154	0	4809731	5012559	1943704	1944258	227992	13938244	0.36	0.41	0.11	0.12	0	0.23	0.8238	0.2519	0.7973	1.7375	76	53	129	46441	45542	22846	22520	137349	0.34	0.31	0.17	0.17	0	0.34	0.8641	0.2482	0.8002	1.88	0	166829	171090	69064	68620	11885	487488	0.35	0.39	0.12	0.13	0	0.25	0.847	0.212	0.8251	1.7856	8	12	20	284	358	391	493	1526	0.19	0.24	0.26	0.32	0.58	0.8985	0.2433	0.7887	1.9643	0	4	3	7	199	191	218	225	833	0.24	0.23	0.26	0.27	0.53	0.8861	0.0408	0.9603	1.9966	20153	17627	12135	12380	11510	9850	10675	22271	7251	12712	25779	26049	15738	9546	11768	17762	10199	12433	12135	20022	11547	10616	6474	18943	12135	9818	9221	17232	16326	12025	12876	10245	9855	18574	17659	12930	9750	4371	12280	8367	7952	4584	38456	7535	8930	14742	4544	14679	12864	13421	8353	6606	19072	7147	6049	13164	6033	6323	7483	7902	22632	11248	11297	8187
NA	NC_011594	NC_011594.1	Acyrthosiphon pisum mitochondrion; complete genome.	7873	6505	1665	926	0	16969	0.46	0.38	0.1	0.05	0	0.15	0.7876	0.3804	0.6912	1.6019	23	15	38	5352	6828	1119	1191	0	14490	0.42	0.44	0.06	0.08	0	0.14	0.7807	0.4196	0.6948	1.5581	90	2	0	2	717	830	216	139	0	1902	0.38	0.44	0.11	0.07	0.19	0.8343	0.2999	0.7493	1.681	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	9	23	668	643	85	128	1524	0.44	0.42	0.06	0.08	0.14	0.7641	0.4096	0.7116	1.5451	65	0	2	2	785	929	100	212	2026	0.39	0.45	0.05	0.1	0.16	0.8059	0.4207	0.6761	1.6044	2	0	6	8	8	0	9	84	0	0	46	7	28	0	6	11	3	0	10	65	0	4	0	8	0	0	9	0	21	19	7	6	0	50	26	0	3	0	2	1	1	0	21	0	0	4	1	7	1	14	0	0	70	13	0	11	0	0	0	1	10	2	22	7