GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_028408465.1	NC_071498	NC_071498.1	Anastrepha ludens isolate Willacy chromosome 2; idAnaLude1.1; whole genome shotgun sequence.	58235201	58226252	34291850	34337494	100	185090897	0.31	0.31	0.19	0.19	0.37	0.947	0.0007	0.9993	1.9513	1833	1719	3552	22792914	22902397	13336898	13294037	100	72326346	0.32	0.3	0.19	0.2	0.38	0.9195	0.0992	0.9101	1.9489	146799	1662	1571	3233	1666273	1363637	1229602	1277523	5537035	0.3	0.26	0.21	0.23	0.44	0.8845	0.2566	0.7881	1.958	35	13788282	14198256	8020839	7917165	0	43924542	0.32	0.37	0.15	0.16	0.31	0.8574	0.2519	0.7969	1.8572	0	107	95	202	80153	73695	42657	45508	242013	0.33	0.3	0.18	0.19	0.37	0.8768	0.2449	0.7944	1.922	392077	406399	226180	225988	1250644	0.33	0.38	0.14	0.15	0.28	0.835	0.2965	0.7681	1.8156	41	25	66	929	1139	1226	1645	4939	0.19	0.23	0.25	0.33	0	0.58	0.8768	0.2644	0.7764	1.9611	0	1	1	29	26	31	33	119	0.24	0.22	0.26	0.28	0	0.54	0.9044	0.0858	0.918	1.9945	44519	40798	22702	26102	42733	31135	30569	42253	16916	29166	54053	50744	31217	25246	25961	36842	19524	33967	27595	36932	28786	25266	18015	40339	33423	22178	21014	41820	30016	22392	28498	22570	18490	34201	41726	24590	27131	12995	25845	25792	30417	26964	63875	28296	28335	27265	10467	22817	22275	30903	25533	29197	28044	15814	15246	33606	9863	15304	20652	23311	55162	17518	21822	24308
GCF_028408465.1	NC_071499	NC_071499.1	Anastrepha ludens isolate Willacy chromosome 3; idAnaLude1.1; whole genome shotgun sequence.	41916104	41928413	24756463	24733135	0	133334115	0.31	0.31	0.19	0.19	0.37	0.9479	0.0006	0.9994	1.9516	1425	1370	2795	16931205	16955934	9903440	9854885	0	53645464	0.32	0.3	0.19	0.2	0.38	0.9183	0.1047	0.9055	1.9492	99091	1287	1239	2526	1329960	1086290	985199	1023658	4425107	0.3	0.26	0.21	0.23	0.44	0.8849	0.2602	0.7864	1.9568	22	9235602	9507076	5372837	5284894	0	29400409	0.32	0.37	0.15	0.16	0.31	0.8543	0.2591	0.7916	1.8551	0	78	77	155	66304	56527	34565	36142	193538	0.33	0.29	0.18	0.19	0.38	0.8754	0.2437	0.7964	1.9241	412641	419260	238881	243178	1313960	0.33	0.38	0.14	0.15	0.29	0.8377	0.2743	0.7832	1.8306	39	32	71	1015	1217	1314	1660	5206	0.2	0.24	0.25	0.32	0	0.57	0.8928	0.2299	0.8015	1.971	0	2	2	54	50	62	72	238	0.23	0.21	0.26	0.3	0	0.56	0.9044	0.1131	0.8935	1.9858	34751	32027	18290	21300	33358	25882	24440	33421	13521	22678	43180	42561	24896	20117	21351	29026	16017	27113	21757	29096	23469	20788	14351	33085	26705	17620	17476	32505	24024	17848	22229	18251	14955	27366	33166	19756	22008	10267	20277	20579	24579	22508	51302	22984	22634	21388	8111	17933	17828	24879	20390	23705	22112	12833	11915	26691	7890	12181	16659	19102	43140	13414	16677	19362
GCF_028408465.1	NC_071500	NC_071500.1	Anastrepha ludens isolate Willacy chromosome 4; idAnaLude1.1; whole genome shotgun sequence.	41326985	41327039	24401397	24329888	0	131385309	0.31	0.31	0.19	0.19	0.37	0.9473	0.0015	0.9985	1.9514	1362	1358	2720	16546627	16543212	9660473	9620566	0	52370878	0.32	0.3	0.19	0.19	0.38	0.9183	0.1025	0.9072	1.9486	165170	1248	1218	2466	1310178	1059378	953976	979357	4302889	0.3	0.26	0.21	0.23	0.44	0.8822	0.2647	0.783	1.954	1041	9394834	9650611	5461505	5385531	0	29892481	0.33	0.37	0.15	0.15	0.31	0.8568	0.2413	0.8044	1.8539	0	82	93	175	68622	62011	37206	39216	207055	0.33	0.3	0.18	0.19	0.38	0.8763	0.2571	0.786	1.9244	371796	391593	220615	219812	1203816	0.33	0.38	0.14	0.15	0.29	0.835	0.2726	0.7848	1.8264	15	14	29	427	523	555	675	2180	0.2	0.24	0.25	0.31	0	0.56	0.8932	0.1986	0.8254	1.9765	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	33622	32753	18442	21103	32355	23865	24937	32763	13152	21383	41902	41958	24684	19064	20731	28744	15951	25459	21528	27669	21702	19505	13511	31806	26236	16921	16585	31565	23546	17431	21718	18053	14582	26926	32332	19456	20870	10622	20171	19749	23583	19812	52413	20925	21054	22168	7915	17911	16745	24038	19324	20973	22406	13434	11518	27765	7844	11509	15711	18528	42119	13425	16352	18324
GCF_028408465.1	NC_071501	NC_071501.1	Anastrepha ludens isolate Willacy chromosome 5; idAnaLude1.1; whole genome shotgun sequence.	40300773	40323266	23789755	23755836	300	128169930	0.31	0.31	0.19	0.19	0.37	0.9479	0.001	0.999	1.9514	1315	1323	2638	16210050	16274853	9467004	9451415	0	51403322	0.31	0.3	0.19	0.2	0.39	0.9176	0.1035	0.9065	1.9486	72833	1197	1126	2323	1223038	1012008	901557	939743	4076346	0.3	0.26	0.21	0.23	0.44	0.8849	0.2567	0.7884	1.9565	248	9475539	9739836	5511204	5445387	0	30171966	0.32	0.37	0.15	0.16	0.31	0.8558	0.251	0.7977	1.8561	0	81	71	152	65326	56283	33070	34941	189620	0.34	0.29	0.18	0.2	0.37	0.8755	0.2686	0.7799	1.9168	520509	533863	298754	303598	1656724	0.33	0.37	0.14	0.16	0.3	0.8494	0.2654	0.7902	1.8386	38	45	83	1074	1377	1648	1951	6050	0.18	0.23	0.27	0.32	0	0.59	0.8807	0.2355	0.7989	1.9503	0	62	62	1747	1553	1918	2160	7378	0.24	0.21	0.26	0.29	0	0.55	0.9032	0.1193	0.8877	1.9893	32567	30054	17165	19764	30701	23500	22807	30754	12151	21827	40170	39033	22761	18580	19253	25832	14487	25280	19904	27250	21408	19124	13227	30554	23736	16193	15596	31356	22369	16100	21091	17289	14170	25384	30515	17580	20512	9387	18833	19093	21454	20302	47826	19943	21043	20750	7503	15851	16701	23384	18262	21229	21017	12072	10945	24531	6944	11426	14767	18129	39889	12212	14909	17264
GCF_028408465.1	NC_071502	NC_071502.1	Anastrepha ludens isolate Willacy chromosome 6; idAnaLude1.1; whole genome shotgun sequence.	40438813	40418084	23504052	23454707	400	127816056	0.32	0.32	0.18	0.18	0.37	0.947	0.0013	0.9987	1.9486	1514	1578	3092	18275178	18316693	10534295	10502800	0	57628966	0.32	0.3	0.19	0.2	0.38	0.9181	0.0968	0.9118	1.9482	97670	1365	1397	2762	1422284	1175699	1039478	1080238	4717699	0.3	0.26	0.21	0.23	0.44	0.8837	0.2585	0.7872	1.9559	0	9858435	10132795	5639231	5556813	0	31187274	0.33	0.37	0.15	0.16	0.31	0.8543	0.2541	0.7948	1.8524	19501	86	83	169	58444	50825	30774	31846	171889	0.33	0.29	0.18	0.19	0.37	0.8742	0.2637	0.7831	1.9186	427908	431818	241288	239795	1340809	0.33	0.37	0.14	0.16	0.3	0.8497	0.2563	0.7956	1.8458	49	79	128	1776	2147	2486	3054	9463	0.19	0.23	0.26	0.32	0	0.59	0.887	0.2373	0.7948	1.9604	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	37302	34422	19492	22050	35145	26439	25822	36634	14524	25078	46250	44979	26156	21174	22234	31455	17561	28460	24950	32568	24154	21662	15441	35385	27471	19016	18203	35294	26559	19071	24746	19940	15558	30025	35251	20626	22800	10741	22235	21311	25729	23415	55867	23662	24424	22839	8646	19460	19102	25618	21612	23974	24332	13587	12525	27986	8338	12952	16666	20708	45193	14896	18421	20555
GCF_028408465.1	NC_071503	NC_071503.1	Anastrepha ludens isolate Willacy chromosome X; idAnaLude1.1; whole genome shotgun sequence.	30777030	30719563	19180551	19313735	1300	99992179	0.31	0.31	0.19	0.19	0.38	0.9293	0.0044	0.9956	1.9615	536	587	1123	5071060	5141005	3270147	3268168	100	16750480	0.32	0.28	0.2	0.21	0.4	0.9148	0.1479	0.869	1.9574	38879	477	502	979	456541	364296	304949	312179	1437965	0.32	0.26	0.2	0.22	0.42	0.887	0.2718	0.7768	1.9427	660	2960274	3064472	1887625	1880123	100	9792594	0.33	0.36	0.15	0.16	0.31	0.8523	0.2457	0.8014	1.8552	0	39	66	105	58807	53151	33313	33882	179153	0.33	0.29	0.18	0.2	0.38	0.882	0.243	0.7967	1.9245	113423	120751	73249	72591	380014	0.34	0.39	0.12	0.15	0.28	0.8174	0.3589	0.725	1.8028	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10	1	11	3137	3188	2090	2559	10974	0.28	0.28	0.2	0.24	0	0.44	0.9092	0.1222	0.8891	1.9809	11160	11621	7150	7464	10587	8553	8193	12219	4568	6618	14943	16095	9110	6105	6715	10425	5922	6897	7207	10571	7052	6437	5087	11736	7988	5432	6399	10272	7123	5966	7307	7216	4953	10211	10839	8220	5695	3092	5900	5958	6915	5273	20294	4964	5723	7981	3073	6249	5510	7867	6259	5316	9655	4536	4149	8592	2040	3147	4581	5316	14174	3589	2983	5557
GCF_028408465.1	NC_071504	NC_071504.1	Anastrepha ludens isolate Willacy chromosome Y; idAnaLude1.1; whole genome shotgun sequence.	1990489	1928909	1145846	1080938	100	6146282	0.32	0.31	0.19	0.18	0.36	0.8579	0.0449	0.9562	1.9442	23	31	54	78615	75939	48063	46835	0	249452	0.31	0.28	0.2	0.2	0.41	0.9136	0.1289	0.8849	1.96	93	21	29	50	26828	23713	20028	19614	90183	0.32	0.26	0.2	0.22	0.42	0.8929	0.2441	0.7952	1.9414	0	33750	32870	18494	17643	0	102757	0.34	0.34	0.15	0.17	0.32	0.8549	0.245	0.7998	1.8566	0	2	1	3	1358	1308	713	783	4162	0.32	0.3	0.18	0.21	0.39	0.8835	0.1513	0.8702	1.9422	194	204	35	89	522	0.37	0.38	0.07	0.18	0.25	0.7829	0.6055	0.5961	1.7346	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	575	712	382	523	741	496	550	799	301	459	871	946	669	363	357	646	424	380	492	729	454	443	390	751	509	289	434	734	484	441	418	529	401	647	647	520	368	178	331	369	310	393	1058	347	469	471	151	330	349	493	395	366	550	370	239	556	78	224	292	450	807	146	122	322