GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_020184175.1	NC_065530	NC_065530.1	Aphis gossypii isolate Hap1 chromosome 1; ASM2018417v2; whole genome shotgun sequence.	32382326	32402008	12334777	12311672	4300	89435083	0.36	0.36	0.14	0.14	0.28	0.9387	0.0012	0.9988	1.8494	2264	2268	4532	22228172	22750665	8511073	8653294	1800	62145004	0.35	0.36	0.14	0.15	0.29	0.8982	0.086	0.9206	1.8522	271004	1865	1847	3712	1963243	1624898	1085337	1184555	5858033	0.34	0.28	0.17	0.2	0.37	0.865	0.2834	0.7688	1.9065	8	11502076	12063196	4091193	4119921	1200	31777586	0.37	0.43	0.1	0.11	0	0.21	0.8116	0.2744	0.7824	1.6995	14585	289	287	576	228552	222149	100723	103555	654979	0.35	0.32	0.16	0.17	0	0.33	0.8595	0.2296	0.8085	1.8745	155	938586	963472	357563	358487	100	2618208	0.36	0.4	0.12	0.13	0	0.24	0.8384	0.2157	0.8244	1.7706	41	40	81	1137	1330	1612	1989	6068	0.19	0.22	0.26	0.33	0.59	0.8812	0.261	0.7779	1.9532	8	3	11	314	303	341	352	1310	0.24	0.23	0.26	0.27	0.53	0.8859	0.037	0.9639	1.9972	49501	42291	30072	31791	26640	22250	26605	57323	17210	29125	66197	65880	38893	20456	28759	40190	26105	28245	28990	51086	25349	24840	15221	47108	27414	22014	22709	42035	42961	28397	30472	24915	21609	46477	42086	29013	20959	9407	29183	18756	18528	9921	97817	17146	18565	37091	8973	35778	30636	32227	19231	14089	51351	17269	13472	31538	15263	13069	16655	18088	54781	28986	27137	18480
GCF_020184175.1	NC_065531	NC_065531.1	Aphis gossypii isolate Hap1 chromosome 2; ASM2018417v2; whole genome shotgun sequence.	32336706	32403210	12202776	12181768	3400	89127860	0.36	0.36	0.14	0.14	0.27	0.938	0.0019	0.9981	1.8466	2174	2181	4355	21534551	22070234	8192715	8337646	600	60135746	0.36	0.36	0.14	0.15	0.28	0.8976	0.084	0.9219	1.8474	206608	1798	1802	3600	1949437	1616002	1048230	1147984	5761653	0.35	0.29	0.17	0.2	0.37	0.8642	0.2838	0.7685	1.9024	0	11447125	12027178	4059432	4103514	200	31637449	0.37	0.43	0.09	0.11	0	0.2	0.8104	0.2798	0.7791	1.6957	0	295	287	582	213342	201043	95519	97102	607006	0.36	0.32	0.16	0.17	0	0.33	0.8597	0.2347	0.8031	1.8754	0	1206709	1237963	448685	451132	0	3344489	0.37	0.4	0.11	0.12	0	0.24	0.8382	0.2017	0.8338	1.7658	39	30	69	998	1183	1286	1654	5121	0.2	0.23	0.25	0.32	0.57	0.8981	0.2517	0.787	1.9648	5	4	9	254	253	277	289	1073	0.24	0.24	0.26	0.27	0.53	0.8902	0.047	0.9547	1.9972	49246	40749	29411	31641	25642	21404	25241	58579	16394	28768	67579	65643	38664	19534	28915	39688	26321	26651	27943	51574	24623	23626	14739	47849	26592	20724	22870	41612	43045	27041	29593	24837	20114	47067	41790	27530	19926	8870	27697	16867	17836	9701	98157	15920	18980	35849	8705	35557	30759	32073	18265	13285	52709	17063	12958	30167	15344	12278	15562	17028	54470	29034	26770	17559
GCF_020184175.1	NC_065532	NC_065532.1	Aphis gossypii isolate Hap1 chromosome 3; ASM2018417v2; whole genome shotgun sequence.	20288389	20339875	7716327	7719100	4200	56067891	0.36	0.36	0.14	0.14	0.28	0.9366	0.0014	0.9986	1.849	1513	1543	3056	13984373	14293343	5355513	5426947	600	39060776	0.35	0.36	0.14	0.15	0.29	0.8981	0.0842	0.9219	1.8529	127638	1259	1214	2473	1325288	1092397	718034	781286	3917005	0.35	0.28	0.17	0.2	0.37	0.8651	0.2834	0.7687	1.9027	38	6915127	7255284	2461491	2469275	200	19101377	0.37	0.43	0.1	0.11	0	0.21	0.8111	0.2769	0.7806	1.7	0	216	233	449	190977	181848	86320	88410	547555	0.35	0.32	0.16	0.17	0	0.33	0.8611	0.2279	0.8085	1.8813	139	1105326	1131154	419228	421750	0	3077458	0.36	0.4	0.12	0.13	0	0.25	0.8468	0.1953	0.8382	1.7792	14	30	44	597	735	863	1008	3203	0.19	0.23	0.27	0.32	0.58	0.8869	0.1937	0.8292	1.9664	4	8	12	343	333	371	382	1429	0.24	0.23	0.26	0.27	0.53	0.8869	0.0294	0.9715	1.9975	33460	27574	20064	21383	17766	14604	17373	39746	11253	18763	45519	44263	26097	13454	19484	26665	17561	17870	19162	34850	16587	16289	9879	32583	17966	14082	15161	28094	28905	18764	19923	16846	13801	32124	28812	18948	13822	6384	19081	12135	11965	6857	67313	11194	12411	24444	6072	24083	20236	21607	12524	9057	35707	11818	8702	20630	10355	8678	10818	11817	37150	19732	17760	12369
GCF_020184175.1	NC_065533	NC_065533.1	Aphis gossypii isolate Hap1 chromosome X; ASM2018417v2; whole genome shotgun sequence.	23527312	23507110	8948082	8939446	12200	64934150	0.36	0.36	0.14	0.14	0.28	0.9355	0.0009	0.9991	1.8492	1537	1525	3062	13054165	13296114	5007405	5051140	2300	36411124	0.36	0.35	0.14	0.15	0.29	0.8969	0.0887	0.9184	1.8542	112807	1231	1208	2439	1278436	1038285	686237	745454	3748412	0.35	0.28	0.17	0.2	0.37	0.8642	0.2854	0.7669	1.9007	3	7387811	7719428	2643257	2648398	1000	20399894	0.37	0.43	0.1	0.11	0	0.21	0.8151	0.257	0.794	1.7032	0	254	240	494	214138	201749	90068	90672	596627	0.36	0.32	0.16	0.16	0	0.32	0.8594	0.2414	0.7989	1.8671	0	637401	655382	225395	225928	0	1744106	0.36	0.4	0.11	0.12	0	0.23	0.834	0.2165	0.821	1.757	17	23	40	494	641	791	978	2904	0.17	0.22	0.27	0.34	0.61	0.8877	0.2534	0.7785	1.949	4	7	11	309	305	337	358	1309	0.24	0.23	0.26	0.27	0.53	0.8842	0.0562	0.9457	1.9965	32578	26255	18443	20347	16782	14208	15228	38289	10481	18043	45558	41503	24943	13801	18406	27399	16031	17073	18048	33358	15822	14915	9223	30784	17771	13306	14695	26146	28349	17856	19094	15308	12402	32009	28150	18718	13592	5754	18110	11296	11717	6906	65002	10622	12190	22228	5740	22469	20108	21077	12379	9285	33320	10488	8300	19285	9245	8700	10719	11426	35211	18881	17004	12267
NA	NC_024581	NC_024581.1	Aphis gossypii mitochondrion; complete genome.	7208	6079	1651	931	0	15869	0.45	0.38	0.1	0.06	0.16	0.8645	0.3638	0.7036	1.6271	9	4	13	3851	5252	974	899	0	10976	0.37	0.47	0.09	0.07	0.16	0.8099	0.4551	0.6538	1.5936	21	2	0	2	720	815	226	141	1902	0.38	0.43	0.12	0.07	0.19	0.8252	0.3071	0.7462	1.6929	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	4	9	275	257	39	51	622	0.44	0.41	0.06	0.08	0.14	0.7516	0.2379	0.8199	1.5675	0	1	1	484	587	57	132	1260	0.38	0.47	0.05	0.1	0.15	0.8145	0.493	0.6282	1.5866	3	0	8	12	11	0	6	77	1	1	47	7	20	0	1	9	8	0	8	68	0	0	2	7	0	2	9	0	19	23	11	4	0	47	22	1	2	1	3	1	2	0	21	0	0	2	1	11	1	15	0	0	75	7	0	17	0	0	0	0	10	2	21	8