GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_N Number of 'N' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_917208135.1	NC_064026	NC_064026.1	Athalia rosae chromosome 1; iyAthRosa1.1; whole genome shotgun sequence.	9531909	9511202	6775017	6807689	500	32626317	0.29	0.29	0.21	0.21	0.42	0.9586	0.0035	0.9965	1.9797	1164	1164	2328	7765727	7780135	5489233	5467919	0	26503014	0.31	0.3	0.19	0.2	0.39	0.9225	0.0758	0.9293	1.9599	92258	1033	1016	2049	1089495	871099	784900	835397	3580891	0.3	0.25	0.22	0.24	0.45	0.8821	0.2661	0.7811	1.9572	231	3768389	3991556	2765264	2683480	0	13208689	0.31	0.35	0.17	0.17	0.34	0.8681	0.2351	0.8034	1.8975	0	123	122	245	136171	128868	92004	94023	451066	0.3	0.27	0.21	0.22	0.42	0.8892	0.2008	0.8291	1.9562	285156	291896	202961	203076	983089	0.3	0.34	0.18	0.18	0.36	0.8781	0.2144	0.8228	1.9166	19	9	28	374	467	546	670	2057	0.18	0.23	0.26	0.32	0.59	0.887	0.2302	0.7994	1.9608	2	0	2	512	514	479	563	0	2068	0.24	0.23	0.25	0.27	0	0.52	0.9196	0.081	0.9241	1.9947	24901	27718	14904	17327	19390	22441	17837	24719	14837	18402	29945	38465	21285	17782	17251	23993	16784	15744	20498	22505	19112	15397	15968	26770	21909	15843	12972	23659	16697	22980	21297	16994	15826	19751	22678	20307	15572	10877	17555	13468	16833	9362	43874	12419	14679	19508	10739	24967	13362	16572	17327	13492	16527	13536	14292	18967	7836	11527	14852	11568	30029	10647	15739	18573
GCF_917208135.1	NC_064027	NC_064027.1	Athalia rosae chromosome 2; iyAthRosa1.1; whole genome shotgun sequence.	9175012	9210413	6470579	6463957	2500	31322461	0.29	0.29	0.21	0.21	0.41	0.9588	0.0024	0.9976	1.978	1188	1208	2396	7603713	7549533	5261035	5268528	500	25683309	0.31	0.3	0.19	0.2	0.39	0.9221	0.0812	0.9246	1.9592	23446	1046	1037	2083	1124404	895405	805671	869140	3694620	0.3	0.25	0.21	0.24	0.45	0.883	0.2677	0.7799	1.9575	208	3642648	3823745	2597285	2531960	500	12596138	0.31	0.35	0.17	0.17	0.34	0.8679	0.2388	0.8007	1.898	0	125	128	253	138334	130880	90075	92954	452243	0.3	0.28	0.21	0.21	0.42	0.8871	0.206	0.825	1.9542	239181	251803	174686	172499	838169	0.3	0.34	0.18	0.18	0.36	0.878	0.2113	0.8223	1.9184	22	7	29	398	462	565	718	2143	0.19	0.22	0.26	0.33	0.6	0.8864	0.2318	0.7974	1.9563	1	17	18	6791	6653	6997	8419	0	28860	0.24	0.23	0.25	0.28	0	0.54	0.9197	0.0926	0.9136	1.9918	25452	28598	15070	17653	20045	23684	18425	25782	15377	18895	30686	41300	21540	19089	17571	25325	17169	16445	21610	22997	18990	16327	16403	28447	23041	16360	12675	24163	16775	24013	22295	17379	16553	20066	23130	21131	15286	10726	17947	13804	17284	9644	45313	12736	15008	20269	10997	25901	13575	16732	18684	14492	16940	13944	15123	19045	8028	12049	14939	12173	30174	10637	15923	19658
GCF_917208135.1	NC_064028	NC_064028.1	Athalia rosae chromosome 3; iyAthRosa1.1; whole genome shotgun sequence.	7480426	7587221	5227444	5233264	2356	25530711	0.29	0.3	0.2	0.2	0.41	0.9524	0.0076	0.9924	1.9763	1063	1090	2153	5786564	5750689	3983956	4003054	756	19525019	0.3	0.29	0.2	0.21	0.4	0.9215	0.0848	0.9218	1.9615	32886	890	895	1785	973281	775487	710191	761221	3220180	0.3	0.24	0.22	0.24	0.45	0.8822	0.2672	0.7804	1.9592	20	2607749	2782515	1847982	1794233	0	9032479	0.3	0.36	0.17	0.17	0.34	0.8647	0.2622	0.7835	1.8945	0	107	103	210	110420	104470	73277	75683	363850	0.3	0.27	0.21	0.22	0.43	0.8879	0.2043	0.8266	1.9562	145891	151646	99325	98635	495497	0.3	0.34	0.18	0.18	0.36	0.8755	0.2232	0.8146	1.9122	18	14	32	451	549	619	751	2370	0.19	0.23	0.26	0.32	0.58	0.887	0.2097	0.8157	1.9679	55	52	107	40727	40075	41430	49777	56	172065	0.24	0.23	0.25	0.28	0	0.53	0.9209	0.0935	0.9128	1.9929	22046	25124	13551	15089	17548	21599	16577	21368	13121	16179	25871	35113	18111	16404	14688	21623	14631	14121	18714	19994	17514	13867	15074	24639	21105	14437	11517	20613	14298	21511	19624	15649	14808	18003	19463	18768	13849	9529	15671	13037	14830	8699	39125	11129	12975	17940	9850	22190	11561	14896	16007	12536	14481	12330	13237	16343	6720	10514	13350	10940	26446	8983	13086	17219
GCF_917208135.1	NC_064029	NC_064029.1	Athalia rosae chromosome 4; iyAthRosa1.1; whole genome shotgun sequence.	5805406	5738333	4087268	4096100	2500	19729607	0.29	0.29	0.21	0.21	0.41	0.9545	0.0069	0.9931	1.9789	808	705	1513	4610629	4591620	3239811	3256973	1000	15700033	0.3	0.29	0.2	0.21	0.41	0.9227	0.0828	0.9231	1.9634	24190	659	607	1266	670151	530665	490832	524224	2215872	0.3	0.24	0.22	0.24	0.46	0.883	0.269	0.7789	1.9574	141	1926503	2039311	1393628	1357717	500	6717659	0.3	0.35	0.18	0.17	0.35	0.8679	0.2448	0.7963	1.9012	0	74	75	149	87674	83054	58241	60893	289862	0.29	0.27	0.21	0.22	0.44	0.8883	0.2037	0.8263	1.957	189323	199317	123625	123261	635526	0.3	0.35	0.17	0.18	0.35	0.8755	0.2047	0.8276	1.9068	10	7	17	204	288	345	413	1250	0.17	0.23	0.28	0.33	0.61	0.8616	0.316	0.7368	1.9393	65	0	65	25236	24828	25632	30847	0	106543	0.24	0.23	0.25	0.28	0	0.53	0.9216	0.0941	0.9123	1.993	15059	16750	8958	10359	11593	14674	10818	15038	9022	10786	18235	25328	12561	12040	9887	14910	9731	9558	13066	13523	12081	9605	10242	17060	13455	10379	7593	14262	9956	14261	13492	10213	10028	12185	13534	13258	9490	6946	10937	8569	10199	6364	26995	7674	8906	12097	6882	15523	8021	9829	11472	9209	9977	8432	8884	11218	4657	7553	10073	7496	17237	6228	9298	12595
GCF_917208135.1	NC_064030	NC_064030.1	Athalia rosae chromosome 5; iyAthRosa1.1; whole genome shotgun sequence.	5372006	5397146	3865536	3847031	2600	18484319	0.29	0.29	0.21	0.21	0.42	0.956	0.0047	0.9953	1.9801	766	677	1443	4156192	4125272	2982286	2984100	1700	14249550	0.3	0.29	0.2	0.21	0.42	0.9202	0.0864	0.9205	1.9629	31955	583	575	1158	622865	498300	481057	508458	2110680	0.3	0.24	0.22	0.24	0.46	0.8823	0.2649	0.7824	1.9584	0	1787562	1888000	1307304	1275170	1700	6259736	0.3	0.35	0.18	0.17	0.36	0.8658	0.2617	0.7844	1.903	8309	73	82	155	80052	75330	52245	54963	262590	0.3	0.27	0.2	0.23	0.43	0.8852	0.2397	0.8031	1.9528	167902	180803	123874	121602	594181	0.29	0.34	0.18	0.18	0.37	0.8778	0.2129	0.822	1.9199	2	4	6	82	109	117	138	446	0.18	0.24	0.26	0.31	0.57	0.8865	0.2219	0.8035	1.9695	108	3	111	2674	2781	3542	4214	0	13211	0.2	0.21	0.27	0.32	0	0.59	0.9098	0.1088	0.8987	1.9746	13804	15751	8328	10029	11281	13663	10052	13659	8965	10763	16189	21586	12146	12891	9564	14336	9393	9075	12585	12691	10969	9604	10074	14960	12856	10153	6988	12951	8887	14032	12627	9575	9802	11402	13384	12789	9373	6856	10258	8600	9963	6647	24019	8122	8497	11281	7001	13815	7449	9277	12128	9654	9074	8096	9124	10670	4215	8324	10463	7512	16171	5705	8881	12225
GCF_917208135.1	NC_064031	NC_064031.1	Athalia rosae chromosome 6; iyAthRosa1.1; whole genome shotgun sequence.	5206200	5175520	3701666	3720408	1800	17805594	0.29	0.29	0.21	0.21	0.42	0.9546	0.0055	0.9945	1.9799	710	643	1353	4133049	4111414	2934807	2941034	1000	14121304	0.3	0.29	0.2	0.21	0.41	0.9217	0.0836	0.9223	1.9645	7550	568	521	1089	604386	476024	440388	473216	1994014	0.3	0.24	0.22	0.24	0.46	0.8813	0.275	0.7752	1.9571	825	2041055	2139053	1495581	1460111	1000	7136800	0.3	0.35	0.17	0.17	0.34	0.8661	0.2494	0.7929	1.8984	0	74	60	134	66397	63515	46245	47236	223393	0.29	0.27	0.22	0.22	0.44	0.8854	0.2059	0.8231	1.9601	138135	141291	91492	91609	462527	0.3	0.34	0.19	0.17	0.36	0.8764	0.2057	0.8281	1.9117	9	15	24	341	382	468	594	1785	0.19	0.21	0.26	0.33	0.59	0.8894	0.2589	0.7759	1.9575	59	37	96	39146	38379	40081	48210	0	165816	0.24	0.23	0.25	0.28	0	0.53	0.9216	0.0949	0.9115	1.9929	13495	15580	8111	9177	10313	13032	9645	13410	8367	9840	16436	22444	11383	11286	9213	13617	8935	8876	11809	12082	10517	8927	8927	15561	12447	8992	6787	13110	8814	12978	11984	9001	8910	11253	12155	11811	8255	6061	10088	7617	9165	5618	24538	6750	7436	10450	6144	13747	7000	8733	11193	8234	9014	7599	8551	10124	3813	6845	9305	6754	16006	5298	7791	11080
GCF_917208135.1	NC_064032	NC_064032.1	Athalia rosae chromosome 7; iyAthRosa1.1; whole genome shotgun sequence.	4956357	4905128	3366378	3364310	2600	16594773	0.3	0.3	0.2	0.2	0.41	0.9513	0.0055	0.9945	1.9741	738	736	1474	3722625	3671500	2486363	2507125	900	12388513	0.31	0.29	0.19	0.2	0.4	0.919	0.09	0.9168	1.9595	46438	634	585	1219	640443	505374	462882	499015	2107714	0.3	0.24	0.22	0.24	0.46	0.8815	0.2699	0.7781	1.9583	4	1467120	1558455	1016503	989869	700	5032647	0.3	0.36	0.17	0.17	0.34	0.8619	0.2737	0.7754	1.8932	11580	84	115	199	91152	84810	59419	62527	297908	0.3	0.27	0.21	0.22	0.43	0.8785	0.2283	0.8081	1.9558	199418	210473	131883	130871	672645	0.3	0.35	0.18	0.18	0.35	0.8705	0.2347	0.8057	1.9059	14	18	32	438	536	603	785	2362	0.19	0.23	0.25	0.33	0.58	0.8901	0.2662	0.7704	1.9584	6	1	7	260	231	294	300	0	1085	0.24	0.21	0.27	0.28	0	0.55	0.906	0.0692	0.9343	1.9922	14028	15634	8591	9689	11260	13680	10074	14386	8682	10687	17780	22400	12028	11364	9431	14726	9413	8553	12343	13552	11025	9140	9496	15722	12742	9285	7113	12918	9385	14235	12578	9495	9511	11800	13166	12491	8920	6163	10353	8054	10011	6224	26166	7542	8851	11298	6557	15248	7906	9290	10744	8405	9507	7901	9089	10385	4311	7601	8796	7453	16540	6501	9439	12504
GCF_917208135.1	NC_064033	NC_064033.1	Athalia rosae chromosome 8; iyAthRosa1.1; whole genome shotgun sequence.	2606315	2620552	1818090	1797813	400	8843170	0.29	0.3	0.21	0.2	0.41	0.9508	0.0083	0.9917	1.9759	377	358	735	1810554	1770751	1261400	1263107	0	6105812	0.3	0.29	0.2	0.21	0.41	0.9204	0.0957	0.912	1.9668	7587	330	291	621	327316	248367	254060	272097	1101840	0.29	0.23	0.23	0.25	0.47	0.8817	0.2749	0.7749	1.9595	0	683684	728806	482925	466776	0	2362191	0.29	0.35	0.19	0.18	0.36	0.8648	0.2804	0.7711	1.9069	0	50	51	101	60385	55168	38715	40762	195030	0.3	0.26	0.21	0.23	0.44	0.8855	0.2451	0.7966	1.9504	112180	120700	73589	68762	375231	0.28	0.36	0.18	0.18	0.36	0.8664	0.2668	0.7844	1.9058	1	4	5	77	88	95	123	383	0.2	0.23	0.25	0.32	0.57	0.8947	0.2172	0.8077	1.973	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6590	9280	4161	4634	5624	8072	5101	6388	5034	5537	7911	12104	5950	6899	4610	7547	4724	4893	6350	6055	5908	4755	5329	7683	7018	5280	3436	6418	4106	7012	6797	4499	5387	5738	6649	7233	4714	3826	5137	4742	5217	3863	13447	4138	4286	5678	3789	7668	3628	4323	6875	5110	4345	4181	5377	5629	2189	4843	5810	4107	8226	2797	4302	7121