GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_023373825.1	NC_064303	NC_064303.1	Bactrocera dorsalis isolate Fly_Bdor chromosome 1; ASM2337382v1; whole genome shotgun sequence.	36308566	36199222	21145592	21134307	155500	114943187	0.32	0.31	0.18	0.18	0.37	0.9429	0.0018	0.9982	1.9487	1436	1409	2845	21797288	22002141	12676933	12626820	56000	69159182	0.32	0.3	0.18	0.19	0.38	0.9145	0.1075	0.9024	1.9408	1234783	1191	1184	2375	1239202	1015271	897194	928392	0	4080059	0.3	0.26	0.21	0.23	0.44	0.8838	0.2581	0.787	1.9529	4	9817699	10146731	5649689	5573738	26500	31214357	0.33	0.38	0.14	0.15	0	0.29	0.8413	0.2707	0.7826	1.8261	35899	149	150	299	206812	195522	111337	114468	628139	0.34	0.3	0.17	0.19	0	0.36	0.8776	0.2394	0.8023	1.9108	893741	897213	514179	513834	4500	2823467	0.33	0.39	0.13	0.15	0	0.28	0.8283	0.292	0.7681	1.8042	43	46	89	1136	1462	1781	2103	6482	0.18	0.23	0.27	0.32	0	0.6	0.8809	0.2336	0.8001	1.9483	20	0	20	520	520	640	699	2379	0.22	0.22	0.27	0.29	0	0.56	0.9044	0.0441	0.9578	1.9878	32404	29148	17477	18703	29806	22815	21854	30738	11993	21361	41242	40019	22749	19310	18634	26919	14088	24600	20314	27667	20632	18795	13011	30856	22649	16589	15664	30416	23621	15565	21231	16996	14974	27709	32288	18451	20538	8674	18872	18808	21060	20349	48196	19223	19967	21045	6534	17006	17103	22818	18288	21520	23060	10994	10399	24013	6602	11722	15795	18313	40564	12418	14455	17379
GCF_023373825.1	NC_064304	NC_064304.1	Bactrocera dorsalis isolate Fly_Bdor chromosome 2; ASM2337382v1; whole genome shotgun sequence.	33793712	33796765	19467327	19469157	113500	106640461	0.32	0.32	0.18	0.18	0.37	0.9474	0.0001	0.9999	1.9466	1591	1570	3161	22271487	22455250	12813682	12711953	35500	70287872	0.32	0.31	0.18	0.19	0.37	0.9156	0.0987	0.9097	1.9405	933879	1381	1342	2723	1405151	1141333	1024645	1057535	0	4628664	0.3	0.26	0.21	0.23	0.44	0.8837	0.2564	0.7882	1.955	0	10900965	11323641	6222876	6089630	17500	34554612	0.33	0.38	0.14	0.15	0	0.29	0.8452	0.263	0.7877	1.8324	0	154	147	301	236784	224367	126044	129869	717064	0.34	0.3	0.17	0.19	0	0.36	0.8803	0.2293	0.8101	1.9119	933310	947323	530749	532199	3000	2946581	0.33	0.39	0.13	0.15	0	0.28	0.8262	0.2826	0.7749	1.805	27	43	70	993	1201	1310	1741	5245	0.19	0.23	0.25	0.33	0	0.58	0.8754	0.2705	0.7715	1.9605	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	37273	33133	18846	21017	34744	25353	25169	35621	14080	23746	45839	43517	25455	21841	21343	31753	16143	27452	23240	30704	23101	21961	14389	33926	26924	18958	16967	33985	25966	18671	23506	18762	15749	30073	36939	20539	22907	10372	21551	21467	24840	22430	53827	22705	22446	23359	7790	19298	18883	25774	21187	24748	25678	12767	11990	27699	7970	13407	18620	20100	46987	15170	17863	20479
GCF_023373825.1	NC_064305	NC_064305.1	Bactrocera dorsalis isolate Fly_Bdor chromosome 3; ASM2337382v1; whole genome shotgun sequence.	29526826	29573582	17046729	17058610	92000	93297747	0.32	0.32	0.18	0.18	0.37	0.9463	0.0011	0.9989	1.947	1436	1481	2917	17991373	18034894	10259257	10189620	23500	56498644	0.32	0.3	0.18	0.2	0.38	0.9148	0.1066	0.9031	1.9431	995969	1226	1253	2479	1247218	1018627	925835	956405	0	4148085	0.3	0.26	0.21	0.23	0.45	0.8832	0.2627	0.7845	1.9552	925	8267466	8559874	4671481	4572743	9000	26080564	0.33	0.38	0.14	0.15	0	0.29	0.8441	0.2727	0.781	1.8302	33413	117	108	225	134526	127017	69978	72542	404063	0.33	0.3	0.17	0.19	0	0.36	0.878	0.2274	0.8113	1.9126	494905	506686	274198	276952	1500	1554241	0.33	0.38	0.13	0.15	0	0.28	0.8395	0.2706	0.7826	1.8136	56	78	134	1872	2241	2609	3184	9906	0.19	0.23	0.26	0.32	0	0.58	0.8875	0.2321	0.7987	1.9611	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	33011	30203	16618	18283	30292	23305	22484	30500	12603	21846	41029	38944	22245	20017	18932	28204	13946	25165	21453	27403	21593	20153	13479	30983	23914	17398	15302	30807	23326	15671	21458	16556	14688	27206	32432	18353	20777	9165	19892	20426	22890	21781	47849	21410	20617	19964	6630	16788	16841	22540	18877	23040	22275	10577	10392	24738	7027	12267	16656	19268	40532	12619	15574	18200
GCF_023373825.1	NC_064306	NC_064306.1	Bactrocera dorsalis isolate Fly_Bdor chromosome 4; ASM2337382v1; whole genome shotgun sequence.	23835144	23831186	13520993	13496442	72000	74755765	0.32	0.32	0.18	0.18	0.36	0.9496	0.001	0.999	1.9436	1231	1291	2522	16350097	16497254	9284828	9181552	40500	51354231	0.32	0.3	0.18	0.19	0.38	0.9142	0.1092	0.9013	1.9427	242467	1091	1104	2195	1165508	944652	883210	906070	2	3899442	0.3	0.25	0.21	0.23	0.45	0.8843	0.2596	0.7869	1.9559	0	6586805	6826277	3638239	3546001	12498	20609820	0.33	0.38	0.15	0.15	0	0.29	0.8438	0.2708	0.7817	1.8319	0	86	109	195	79885	72355	42986	45296	240522	0.33	0.29	0.18	0.2	0	0.38	0.875	0.2453	0.7979	1.9191	785351	817306	453034	451184	2000	2508875	0.33	0.37	0.15	0.16	0	0.31	0.8515	0.2526	0.799	1.8407	36	40	76	1064	1318	1415	1760	5557	0.19	0.24	0.25	0.32	0	0.57	0.8917	0.2294	0.8015	1.9711	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30412	28236	15258	17421	29391	22128	21558	27528	11574	19829	37303	35626	21040	19133	18186	26614	13270	24353	19182	24649	20752	18775	12327	28334	22715	16302	14423	28231	21624	14678	19804	15601	13857	24788	30859	17750	20686	8745	18100	18755	22402	21142	43907	21075	19829	18842	6051	15577	16005	21806	18383	23110	20194	10296	10050	24074	6364	11742	16489	17503	38547	11741	14806	17118
GCF_023373825.1	NC_064307	NC_064307.1	Bactrocera dorsalis isolate Fly_Bdor chromosome 5; ASM2337382v1; whole genome shotgun sequence.	23766284	23745132	13561437	13572606	88500	74733959	0.32	0.32	0.18	0.18	0.36	0.9502	0.0009	0.9991	1.945	1254	1249	2503	14960313	14940482	8548347	8450163	35000	46934305	0.32	0.3	0.18	0.19	0.37	0.914	0.1051	0.9046	1.9418	334394	1118	1107	2225	1142901	915171	857521	873354	0	3788947	0.3	0.26	0.21	0.23	0.44	0.8812	0.2674	0.7815	1.9529	29	6834227	7045402	3833729	3727907	17000	21458265	0.33	0.38	0.14	0.15	0	0.29	0.8439	0.2657	0.786	1.8284	0	101	86	187	98450	93588	54083	55513	301634	0.33	0.3	0.18	0.19	0	0.38	0.8713	0.252	0.7952	1.909	901267	916156	522873	524736	2000	2867032	0.32	0.35	0.15	0.17	0	0.32	0.8587	0.2235	0.8192	1.8548	15	18	33	493	585	630	786	2494	0.2	0.23	0.25	0.31	0	0.57	0.8947	0.1932	0.8299	1.9756	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	29144	27842	15193	16825	28367	20940	21959	26778	11539	18754	37360	35376	20541	18468	17583	26228	12613	23011	18611	22898	18850	18247	11822	27441	22641	15810	13793	27674	21068	14292	18973	14507	13626	24076	29956	16692	19812	8928	18239	19110	21368	19758	43489	19302	18789	19088	5845	15535	15126	20847	17986	21136	19506	10320	9683	23911	6452	11102	15916	17585	38256	12025	14677	16850
GCF_023373825.1	NC_064308	NC_064308.1	Bactrocera dorsalis isolate Fly_Bdor chromosome 6; ASM2337382v1; whole genome shotgun sequence.	13244447	13226447	8004934	7988155	18500	42482483	0.31	0.31	0.19	0.19	0.38	0.9319	0.0017	0.9983	1.9554	349	366	715	9036692	9117915	5455525	5469673	7000	29086805	0.32	0.3	0.19	0.19	0.38	0.916	0.1233	0.8899	1.9415	704602	276	272	548	274455	210001	170117	172981	0	827554	0.33	0.26	0.19	0.21	0.41	0.8834	0.2884	0.7644	1.9339	0	2503861	2594067	1500137	1501096	0	8099161	0.33	0.38	0.14	0.15	0	0.28	0.8419	0.255	0.7962	1.8143	0	55	75	130	123250	117193	66397	67982	374822	0.34	0.3	0.17	0.19	0	0.36	0.8777	0.2222	0.8137	1.9163	121494	132515	70650	74437	0	399096	0.34	0.4	0.12	0.14	0	0.27	0.8204	0.3167	0.7523	1.7863	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	4	4	704	740	479	604	2527	0.26	0.3	0.19	0.25	0	0.44	0.8922	0.1952	0.8255	1.9818	6806	6415	4088	4202	5868	4420	4034	7080	2581	3567	9552	9378	5093	3367	3970	6078	3111	3975	3997	6186	3955	3166	2736	6383	4721	3221	3696	5712	4688	3621	4269	3798	2590	7029	6819	4190	3614	1796	3495	3060	3750	2411	12554	2704	3221	4381	1612	4039	3174	4707	2938	2842	6014	2490	2505	4890	1461	1874	2373	2812	8579	2586	2008	3190
NA	NC_008748	NC_008748.1	Bactrocera dorsalis mitochondrion; complete genome.	6251	5460	2582	1622	0	15915	0.39	0.34	0.16	0.1	0.26	0.9039	0.2959	0.7508	1.8205	23	14	37	4670	6040	1978	2087	0	14775	0.35	0.39	0.12	0.14	0.26	0.8491	0.3213	0.742	1.7907	14	3	2	5	957	1383	441	498	0	3279	0.3	0.42	0.14	0.14	0.28	0.867	0.3841	0.6947	1.8135	7	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	8	22	541	562	158	206	1467	0.37	0.38	0.11	0.14	0	0.25	0.8365	0.272	0.7791	1.777	0	2	2	763	889	168	303	2123	0.36	0.42	0.08	0.15	0	0.23	0.8404	0.3607	0.7077	1.7553	16	12	26	26	15	2	27	77	1	2	43	24	27	2	20	9	28	5	18	79	3	22	2	14	5	5	13	25	49	31	5	24	2	35	25	7	14	4	6	6	1	1	10	2	1	35	12	20	14	17	3	0	112	23	0	10	1	2	1	5	19	4	33	11