GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_024586455.1	NC_065919	NC_065919.1	Bactrocera neohumeralis isolate Rockhampton chromosome 2; APGP_CSIRO_Bneo_wtdbg2-racon-allhic-juicebox.fasta_v2; whole genome shotgun sequence.	29618254	29583427	16849224	16862636	14409	92927950	0.32	0.32	0.18	0.18	0.36	0.9492	0.001	0.999	1.9449	1608	1584	3192	18767377	18844506	10649175	10530664	4205	58795927	0.32	0.3	0.18	0.19	0.37	0.915	0.1031	0.9061	1.9403	512337	1428	1357	2785	1462614	1191144	1080225	1114328	0	4848311	0.3	0.26	0.21	0.23	0.44	0.8841	0.2559	0.7889	1.9572	35	9170445	9553542	5165255	5025546	1402	28916190	0.33	0.38	0.14	0.15	0	0.29	0.843	0.2669	0.7846	1.8303	1461	129	143	272	124301	109353	61978	64571	360203	0.34	0.3	0.18	0.19	0	0.36	0.8763	0.2258	0.8094	1.915	164	769966	773381	433084	430203	600	2407234	0.34	0.37	0.14	0.15	0	0.3	0.8415	0.2629	0.7885	1.8386	34	40	74	1058	1258	1380	1841	5537	0.19	0.23	0.25	0.33	0.58	0.876	0.2699	0.7717	1.9608	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	39081	35000	19648	21783	36210	26594	26441	36324	14832	24914	47851	44477	26606	23156	22424	33021	16516	29100	24483	31300	24536	23423	15178	35554	28438	19881	17676	35827	27037	19230	24683	19187	16736	31181	38251	21316	24504	11019	22639	22748	26290	24333	55307	24343	23940	24520	7973	19537	19747	27224	22626	26448	26159	13094	12387	29068	8371	14341	19868	21682	49112	15887	19224	21590
GCF_024586455.1	NC_065920	NC_065920.1	Bactrocera neohumeralis isolate Rockhampton chromosome 3; APGP_CSIRO_Bneo_wtdbg2-racon-allhic-juicebox.fasta_v2; whole genome shotgun sequence.	25039545	25112746	14349391	14357693	26321	78885696	0.32	0.32	0.18	0.18	0.36	0.9495	0.0017	0.9983	1.9458	1078	1106	2184	15411029	15563027	8801597	8711550	7714	48494917	0.32	0.3	0.18	0.19	0.37	0.9144	0.104	0.9055	1.9398	580364	917	930	1847	973483	806483	725067	751212	0	3256245	0.3	0.26	0.21	0.23	0.44	0.8843	0.2554	0.7893	1.9557	4	7045500	7277016	3971056	3874048	4314	22171934	0.33	0.38	0.14	0.15	0	0.29	0.8435	0.2672	0.7848	1.8302	47614	93	88	181	76493	67387	38348	39489	221717	0.34	0.3	0.18	0.19	0	0.36	0.8718	0.2631	0.7848	1.9069	195	1676726	1729289	966185	959727	1100	5333027	0.33	0.36	0.15	0.16	0	0.31	0.8639	0.2145	0.8254	1.8603	45	40	85	1082	1394	1704	2013	6193	0.18	0.23	0.27	0.32	0.6	0.8803	0.2348	0.7995	1.9477	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	26010	22907	13350	14667	24035	18015	17520	24003	9812	17710	32070	29762	17824	15888	14984	21452	11008	20121	16255	21266	16563	15746	10041	24431	18004	13279	12207	24851	18915	12050	16757	12810	11757	21512	25900	14104	16843	7071	15447	15261	17811	17368	36553	16545	16782	16311	5047	12665	13858	18327	15302	18087	17657	8246	8127	19338	5528	9792	13453	15221	31778	10294	12329	14177
GCF_024586455.1	NC_065921	NC_065921.1	Bactrocera neohumeralis isolate Rockhampton chromosome 4; APGP_CSIRO_Bneo_wtdbg2-racon-allhic-juicebox.fasta_v2; whole genome shotgun sequence.	28877207	28851786	16505366	16508958	33217	90776534	0.32	0.32	0.18	0.18	0.36	0.9476	0.0005	0.9995	1.9456	1504	1519	3023	17164876	17224738	9688493	9606442	5607	53690156	0.32	0.3	0.18	0.19	0.38	0.914	0.107	0.9029	1.9406	142034	1264	1265	2529	1275355	1049988	940906	973633	0	4239882	0.3	0.26	0.21	0.23	0.44	0.8822	0.2597	0.7861	1.9547	0	7741774	8013094	4302823	4206108	1805	24265604	0.33	0.38	0.14	0.15	0	0.29	0.842	0.2724	0.7811	1.8263	43622	136	147	283	121357	109146	61465	63640	355608	0.34	0.3	0.17	0.19	0	0.36	0.8737	0.2423	0.7984	1.9109	0	910738	926031	515374	518837	1600	2872580	0.34	0.38	0.14	0.15	0	0.29	0.8424	0.268	0.7866	1.8215	77	57	134	1871	2242	2609	3185	9907	0.19	0.23	0.26	0.32	0.58	0.8874	0.2326	0.7983	1.961	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	33486	30248	16917	18714	30857	23376	23170	31864	12923	22069	41962	40009	22852	20052	19515	28534	14436	25519	22028	28642	21286	20917	13474	31783	23958	17701	15417	31454	24587	16478	21899	17027	15093	27915	32869	18708	21021	9340	20243	20436	23136	22002	49219	21876	21295	20894	6765	16852	17339	23371	19161	23024	23209	11025	10356	25078	7289	12360	16954	19709	41121	13717	16538	18681
GCF_024586455.1	NC_065922	NC_065922.1	Bactrocera neohumeralis isolate Rockhampton chromosome 5; APGP_CSIRO_Bneo_wtdbg2-racon-allhic-juicebox.fasta_v2; whole genome shotgun sequence.	25303565	25285218	14189392	14198755	12112	78989042	0.32	0.32	0.18	0.18	0.36	0.9494	0.0007	0.9993	1.9421	1353	1315	2668	18271960	18431405	10246751	10141447	4306	57095869	0.32	0.3	0.18	0.19	0.37	0.9145	0.1084	0.9019	1.9409	95288	1156	1129	2285	1222646	989784	917156	942899	15	4072500	0.3	0.25	0.21	0.23	0.45	0.8843	0.2593	0.7868	1.9556	22	7012895	7256416	3846452	3739706	1688	21857157	0.33	0.38	0.15	0.15	0	0.29	0.8423	0.2729	0.7805	1.8301	9653	126	117	243	109722	98121	55874	58775	322492	0.33	0.3	0.18	0.19	0	0.37	0.8742	0.2544	0.7904	1.9169	0	1835429	1907360	1040102	1038286	1003	5822180	0.33	0.37	0.15	0.16	0	0.31	0.86	0.2175	0.8237	1.8512	43	36	79	1115	1366	1463	1830	5774	0.2	0.24	0.25	0.32	0.57	0.8926	0.2344	0.7978	1.9711	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	31512	29144	16224	18298	30522	23181	22459	29361	12412	20618	39280	38521	22305	19656	19168	27915	14263	25256	19721	25976	21077	19591	12708	30089	23360	17050	14745	29491	22729	15666	20612	16097	14519	26042	32273	18603	21217	9305	18791	19528	23160	21606	46374	21268	20488	19984	6352	16455	16665	22609	18992	23726	21151	10964	10199	24819	6761	11971	17033	18313	40037	12545	15561	18067
GCF_024586455.1	NC_065923	NC_065923.1	Bactrocera neohumeralis isolate Rockhampton chromosome 6; APGP_CSIRO_Bneo_wtdbg2-racon-allhic-juicebox.fasta_v2; whole genome shotgun sequence.	25809586	25843701	14689877	14684636	16328	81044128	0.32	0.32	0.18	0.18	0.36	0.9497	0.0008	0.9992	1.9447	1314	1288	2602	16237945	16273820	9212151	9114703	4714	50843333	0.32	0.3	0.18	0.19	0.37	0.9146	0.1083	0.902	1.941	182755	1141	1147	2288	1159962	942790	867892	886847	0	3857491	0.3	0.26	0.21	0.23	0.44	0.8811	0.265	0.7825	1.9535	29	7004179	7225576	3895995	3792813	1806	21920369	0.33	0.38	0.14	0.15	0	0.29	0.8428	0.2645	0.7871	1.8274	0	114	95	209	83695	75702	44773	46631	250801	0.33	0.3	0.18	0.19	0	0.37	0.8714	0.2616	0.7871	1.9121	0	1239214	1283241	717578	722054	100	3962187	0.33	0.36	0.15	0.16	0	0.31	0.8602	0.2156	0.8245	1.8541	23	13	36	528	637	686	840	2691	0.2	0.24	0.25	0.31	0.57	0.8926	0.1922	0.8311	1.9759	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	29964	27540	15581	17181	28782	21283	22334	28064	11978	19199	38274	35803	21104	18600	18132	26216	13019	23195	19306	24109	19107	18993	11996	28599	22968	16026	14010	28386	22110	14797	19164	15171	13658	24560	30077	16858	19631	9071	18530	19346	21537	19864	43940	19840	18857	19511	6032	15367	15829	21796	18155	21294	20299	10234	9272	23762	6577	11088	16060	17736	39008	12350	14876	16806
NA	NC_062139	NC_062139.1	Bactrocera neohumeralis isolate Bn135 mitochondrion; complete genome.	6172	5365	2693	1694	0	15924	0.39	0.34	0.17	0.11	0.28	0.9085	0.2977	0.7491	1.8363	23	14	37	4592	5915	2081	2153	0	14741	0.35	0.39	0.13	0.14	0.26	0.8518	0.3247	0.7373	1.7984	17	4	2	6	1167	1596	616	578	0	3957	0.31	0.4	0.16	0.14	0.29	0.8672	0.381	0.6948	1.8343	15	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	8	22	546	555	162	204	1467	0.37	0.38	0.11	0.14	0.25	0.8395	0.28	0.7701	1.7795	2	2	753	867	163	304	2087	0.36	0.41	0.08	0.15	0	0.23	0.8431	0.3704	0.7032	1.7564	19	9	33	31	18	1	32	84	4	7	52	29	41	4	22	11	32	6	24	89	3	14	2	14	5	7	36	26	49	46	15	35	4	42	34	8	17	10	12	11	4	3	15	4	3	36	15	22	14	22	0	0	122	26	0	12	1	3	1	5	23	5	34	11