GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_016617805.1	NC_052499	NC_052499.1	Bactrocera tryoni isolate S06 chromosome 1; CSIRO_BtryS06_freeze2; whole genome shotgun sequence.	28804015	28769777	16409943	16425914	36276	90445925	0.32	0.32	0.18	0.18	0.36	0.9496	0.0011	0.9989	1.9451	1548	1512	3060	15550101	15679035	8920618	8811134	12342	48973230	0.32	0.3	0.18	0.19	0.37	0.915	0.1051	0.9044	1.943	10072	1429	1393	2822	1461928	1192559	1082617	1116187	1	4853292	0.3	0.26	0.21	0.23	0.45	0.8836	0.2576	0.788	1.9567	35	8732696	9112964	4917934	4785756	8372	27557722	0.33	0.38	0.14	0.15	0	0.29	0.8426	0.2674	0.7842	1.8304	72	47	119	42001	35785	21660	22596	122042	0.33	0.29	0.18	0.19	0	0.37	0.877	0.2549	0.7886	1.9195	0	262501	268470	146355	147050	232	824608	0.33	0.37	0.14	0.15	0	0.29	0.846	0.2432	0.8035	1.8335	29	35	64	888	1103	1167	1577	4735	0.19	0.23	0.25	0.33	0.58	0.8814	0.269	0.7715	1.9625	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	39153	35131	19635	21724	36302	26564	26560	36373	14811	25099	47763	44099	26465	23179	22475	33185	16617	29280	24527	31138	24683	23406	15388	35453	28567	19908	17716	36007	26935	19157	24674	19254	16917	31057	38138	21287	24645	11035	22702	22719	26420	24402	55202	24474	23918	24514	7999	19552	19839	27321	22779	26358	26133	13113	12268	29036	8458	14428	19848	21832	49197	15866	19205	21679
GCF_016617805.1	NC_052500	NC_052500.1	Bactrocera tryoni isolate S06 chromosome 2; CSIRO_BtryS06_freeze2; whole genome shotgun sequence.	27093930	27136478	15558521	15567053	47562	85403544	0.32	0.32	0.18	0.18	0.36	0.9491	0.0011	0.9989	1.9462	1190	1215	2405	12912744	13027974	7430603	7366130	10611	40748062	0.32	0.3	0.18	0.2	0.38	0.9133	0.1145	0.8968	1.942	29479	1062	1092	2154	1129792	931386	834222	864330	0	3759730	0.3	0.26	0.21	0.23	0.44	0.8838	0.2577	0.7877	1.9544	0	7185992	7436741	4059866	3966790	5570	22654959	0.33	0.38	0.14	0.15	0	0.29	0.8431	0.2677	0.7842	1.8299	72	54	126	36694	31584	19177	20298	107753	0.34	0.29	0.18	0.19	0	0.37	0.8742	0.2561	0.788	1.9142	0	579936	602958	342675	342374	394	1868337	0.34	0.38	0.14	0.15	0	0.28	0.8444	0.2464	0.8044	1.8162	45	42	87	1108	1423	1734	2041	6306	0.18	0.23	0.27	0.32	0.6	0.887	0.2152	0.8134	1.9506	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30123	27366	15877	17372	27942	20817	20904	27811	11030	19941	37280	35231	20785	17992	17455	24503	12982	23271	18286	24241	19077	18193	11540	27897	20913	15314	14044	28471	21464	13864	19694	15223	14145	24795	29704	16181	19153	8150	17575	17605	19979	19418	43042	18281	18901	19527	5883	14681	15641	21098	17287	20573	20538	10049	9537	22527	6367	11101	15303	17541	37199	11775	13876	15980
GCF_016617805.1	NC_052501	NC_052501.1	Bactrocera tryoni isolate S06 chromosome 3; CSIRO_BtryS06_freeze2; whole genome shotgun sequence.	27929061	27910961	15945209	15945633	49765	87780629	0.32	0.32	0.18	0.18	0.36	0.9483	0.0003	0.9997	1.9453	1421	1505	2926	14418081	14493893	8176367	8111932	12717	45212990	0.32	0.3	0.18	0.2	0.38	0.9141	0.1087	0.9015	1.9428	80066	1274	1338	2612	1319430	1084019	971530	1007778	0	4382757	0.3	0.26	0.21	0.23	0.44	0.882	0.2613	0.7852	1.9542	0	7657714	7939238	4270263	4177218	7036	24051469	0.33	0.38	0.14	0.15	0	0.29	0.8428	0.2714	0.7818	1.8275	62	86	148	40450	35149	20964	22833	119396	0.34	0.3	0.17	0.19	0	0.36	0.8673	0.2679	0.7809	1.9102	65	704829	727838	385109	385816	321	2203913	0.34	0.38	0.13	0.15	0	0.28	0.8451	0.2306	0.8127	1.8185	75	55	130	1813	2166	2507	3081	9567	0.19	0.23	0.26	0.32	0.58	0.8953	0.2173	0.8084	1.9641	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	34968	31877	17520	19298	31889	23931	23804	32675	13314	23110	43163	40640	23395	20950	20334	29700	14863	26664	22552	29424	22279	21305	13875	32369	24762	18139	15986	32697	25282	16712	22639	17471	15629	28853	33860	19104	21853	9572	21071	20916	24193	22750	51038	22352	22186	21441	6916	17850	17942	24190	20091	23855	23818	11250	11064	25832	7723	12869	17684	20142	42425	14382	17569	19237
GCF_016617805.1	NC_052502	NC_052502.1	Bactrocera tryoni isolate S06 chromosome 4; CSIRO_BtryS06_freeze2; whole genome shotgun sequence.	25501069	25478453	14302884	14323548	38445	79644399	0.32	0.32	0.18	0.18	0.36	0.9496	0.0012	0.9988	1.9421	1314	1325	2639	14621936	14723943	8264159	8169240	14364	45793642	0.32	0.3	0.18	0.2	0.38	0.9144	0.1117	0.8989	1.9438	92893	1193	1204	2397	1246675	1010652	932884	962920	0	4153131	0.3	0.25	0.21	0.23	0.45	0.8838	0.2602	0.7864	1.9554	22	7107338	7346096	3931228	3828665	7841	22221168	0.33	0.38	0.15	0.15	0	0.29	0.8429	0.2721	0.7807	1.8316	65	66	131	42023	34852	21610	22699	121184	0.34	0.29	0.18	0.19	0	0.37	0.8683	0.2746	0.7745	1.9082	0	1095703	1148857	609544	606632	1766	3462502	0.33	0.36	0.15	0.16	0	0.31	0.8731	0.1966	0.8395	1.8644	44	37	81	1144	1400	1504	1880	5928	0.2	0.24	0.25	0.32	0.57	0.8924	0.2332	0.7988	1.9711	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	32358	29966	16579	18612	31334	23701	22859	30019	12461	21066	40143	39081	22789	20149	19491	28000	14456	25666	20172	26626	21307	19932	12904	30964	24037	17051	15014	29994	23320	16139	20914	16565	14702	26537	32791	18954	21396	9445	19200	19829	23565	22116	47273	21518	20865	20420	6573	16809	17108	23326	19424	24293	21556	11114	10384	25067	6793	12187	17324	18826	40751	12829	15847	18662
GCF_016617805.1	NC_052503	NC_052503.1	Bactrocera tryoni isolate S06 chromosome 5; CSIRO_BtryS06_freeze2; whole genome shotgun sequence.	26054237	26084468	14851919	14847458	48256	81886338	0.32	0.32	0.18	0.18	0.36	0.9499	0.0007	0.9993	1.9448	1285	1293	2578	13658816	13699174	7814430	7720066	16006	42908492	0.32	0.3	0.19	0.19	0.38	0.9141	0.1114	0.8993	1.9434	124749	1180	1208	2388	1222463	987510	913002	932802	28	4055805	0.3	0.26	0.21	0.23	0.44	0.881	0.2665	0.7818	1.953	29	7082434	7320128	3960830	3855380	9681	22228453	0.33	0.38	0.14	0.15	0	0.29	0.8432	0.2636	0.7877	1.8288	59	46	105	30846	26718	16368	17726	91658	0.34	0.29	0.18	0.19	0	0.37	0.8695	0.2815	0.7727	1.9131	0	677188	701125	393956	395958	497	2168724	0.33	0.36	0.15	0.16	0	0.31	0.8687	0.1914	0.8439	1.8619	25	14	39	579	680	744	914	2917	0.2	0.23	0.26	0.31	0.57	0.8933	0.1954	0.8283	1.9753	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	31599	29630	16326	17992	30154	22043	23369	29175	12507	20359	40244	37148	22245	19594	18967	28029	13567	24353	20135	24957	20208	19714	12508	29580	24216	16805	14816	29928	22986	15439	20190	15908	14289	25700	31388	17583	20992	9480	19432	20168	22817	20869	46551	20591	19986	20367	6306	16566	16569	22608	19330	22268	21334	10793	10375	25203	7048	11856	17066	18488	40987	13206	15876	18000
NA	NC_014611	NC_014611.1	Bactrocera tryoni mitochondrion; complete genome.	6173	5360	2694	1698	0	15925	0.39	0.34	0.17	0.11	0.28	0.9081	0.2973	0.7493	1.8367	9	4	13	3290	4497	1751	1649	0	11187	0.3	0.4	0.16	0.14	0.3	0.875	0.3952	0.6857	1.8376	16	4	2	6	1163	1596	616	582	0	3957	0.3	0.4	0.16	0.14	0.3	0.8683	0.3848	0.6924	1.8379	15	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	5	9	216	231	71	92	610	0.35	0.38	0.12	0.15	0.27	0.8452	0.2542	0.7904	1.8181	1	1	490	562	94	180	1326	0.37	0.42	0.07	0.14	0	0.21	0.8422	0.3823	0.6971	1.7174	19	9	33	30	18	3	33	84	4	6	52	27	41	3	21	11	32	6	25	88	2	15	1	15	6	8	37	27	50	42	15	36	4	42	35	7	17	10	11	11	5	3	15	3	3	35	19	22	14	22	0	0	121	26	0	12	1	2	1	5	22	5	35	12