GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_014529535.1	NC_050735	NC_050735.1	Bradysia coprophila strain Holo2 chromosome II; BU_Bcop_v1; whole genome shotgun sequence.	4211489	4203070	2331098	2331632	20495	13097784	0.32	0.32	0.18	0.18	0	0.36	0.9459	0.0011	0.9989	1.939	521	471	992	3223321	3218874	1790549	1812963	20495	10066202	0.32	0.3	0.18	0.2	0.38	0.9162	0.0914	0.9162	1.9517	85278	457	404	861	415354	350864	276268	304157	1346643	0.31	0.27	0.2	0.23	0.42	0.8807	0.2632	0.7834	1.9524	1290302	1341486	706125	698179	20495	4056587	0.3	0.35	0.17	0.18	0.35	0.8585	0.2769	0.7757	1.9021	53	56	109	16989	15812	8295	9126	50222	0.34	0.32	0.17	0.17	0.33	0.8177	0.52	0.6331	1.7206	430337	429525	236377	236629	0	1332868	0.32	0.34	0.16	0.18	0.34	0.8826	0.1544	0.872	1.9086	2	2	4	54	70	83	105	312	0.18	0.22	0.27	0.33	0.6	0.847	0.3506	0.7106	1.9402	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10960	9347	5198	5727	7675	6102	6282	12788	4698	7622	13904	15506	8544	7003	6329	9392	4308	7208	8923	10201	6859	5702	3507	11168	6396	5112	4467	11049	7017	7703	8934	4505	5511	7086	9826	7720	5316	2140	6586	4647	5351	3262	16951	4594	5805	8404	2239	6358	6704	7821	8226	4214	7229	2523	3191	7256	2207	4364	6036	5138	11829	3819	6171	8842
GCF_014529535.1	NC_050736	NC_050736.1	Bradysia coprophila strain Holo2 chromosome III; BU_Bcop_v1; whole genome shotgun sequence.	1782576	1778182	934369	932627	500	5428254	0.33	0.33	0.17	0.17	0	0.34	0.945	0.0022	0.9978	1.9285	244	222	466	1231655	1216023	641772	649275	0	3738725	0.32	0.31	0.18	0.19	0.37	0.9137	0.0913	0.9163	1.9429	2515	224	194	418	209527	169415	132900	141963	653805	0.32	0.27	0.2	0.22	0.42	0.8775	0.2775	0.7734	1.9456	625862	650011	317281	312800	0	1905954	0.31	0.36	0.16	0.17	0.33	0.8508	0.2717	0.7799	1.8847	15	20	35	6547	5882	3497	3745	19671	0.34	0.32	0.17	0.18	0.35	0.8505	0.3528	0.7253	1.8413	50715	51493	26892	26982	0	156082	0.32	0.35	0.15	0.18	0.33	0.8568	0.2203	0.8213	1.8917	1	2	3	36	48	58	79	221	0.16	0.22	0.26	0.36	0.62	0.887	0.346	0.713	1.9324	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5295	4768	2545	3032	3644	2894	2945	6101	2097	3320	7013	7505	4404	3230	3123	4840	2443	3384	4000	4923	3184	2743	1632	5290	3201	2513	2367	5059	3460	3700	4240	2300	2428	3756	5255	3635	2679	1045	3057	1897	2685	1465	8889	1946	2641	3992	1016	3325	3153	3935	3707	1812	3588	1505	1562	3735	1157	1821	2571	2314	6479	2140	2972	3894
GCF_014529535.1	NC_050737	NC_050737.1	Bradysia coprophila strain Holo2 chromosome X; BU_Bcop_v1; whole genome shotgun sequence.	3034254	3036399	1605185	1597039	407536	9680413	0.31	0.31	0.17	0.16	0.04	0.33	0.9457	0.0029	0.9971	1.908	321	338	659	2134282	2123120	1129824	1131572	47923	6566721	0.32	0.3	0.18	0.19	0.38	0.9139	0.0929	0.915	1.9451	15853	268	282	550	271315	218714	175952	189847	855828	0.32	0.26	0.2	0.22	0.42	0.8777	0.2785	0.7731	1.9493	1058775	1098696	547382	534781	31559	3271193	0.31	0.36	0.17	0.17	0.34	0.8577	0.2761	0.7769	1.8921	45	38	83	13682	12403	6846	7375	40306	0.34	0.31	0.16	0.18	0.35	0.8302	0.4382	0.6857	1.8077	171492	172209	89505	88674	0	521880	0.32	0.35	0.16	0.17	0.33	0.8686	0.2226	0.8214	1.8862	10	9	19	286	337	349	422	1394	0.2	0.25	0.25	0.3	0.55	0.8798	0.2119	0.8165	1.9747	1	1	28	28	29	34	119	0.24	0.24	0.24	0.29	0	0.53	0.9044	0.0794	0.9265	1.9951	6838	6329	3244	3632	4921	3865	3808	7982	2910	4350	9548	10090	5575	4333	4164	6158	2625	4516	5531	6177	4340	3559	2105	7056	4216	3379	2774	6710	4438	4845	5711	2698	3453	4575	6335	4881	3453	1416	3998	2879	3468	2056	11361	2838	3362	5139	1294	4216	4065	5032	5061	2590	4611	1741	2014	4979	1376	2622	3728	3231	8301	2476	3883	5541
GCF_014529535.1	NC_050738	NC_050738.1	Bradysia coprophila strain Holo2 chromosome IV; BU_Bcop_v1; whole genome shotgun sequence.	4911471	4912905	2646639	2639252	124656	15234923	0.32	0.32	0.17	0.17	0.01	0.35	0.9455	0.0015	0.9985	1.9298	581	578	1159	3213479	3189030	1746790	1770462	104171	10023932	0.32	0.3	0.18	0.2	0.38	0.9148	0.0953	0.9127	1.9501	35307	497	487	984	479526	393328	314715	339913	1527482	0.31	0.26	0.2	0.22	0.42	0.8805	0.2716	0.778	1.9504	1252226	1311372	663373	652871	31264	3911106	0.3	0.35	0.17	0.17	0.34	0.8537	0.2801	0.773	1.8949	72	85	157	20603	19796	11038	11722	63159	0.33	0.33	0.16	0.17	0.34	0.8112	0.511	0.6414	1.7308	449979	448100	240908	243353	1	1382341	0.32	0.33	0.17	0.18	0.34	0.8854	0.1518	0.8742	1.9127	3	2	5	78	92	94	111	375	0.21	0.24	0.25	0.3	0.55	0.8749	0.1521	0.8631	1.9834	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12106	10905	5810	6711	8702	6923	6830	14269	5163	8002	16183	17719	10439	7956	7181	11128	5197	8165	10085	11055	7808	6602	3905	12537	7567	5941	5084	11857	7609	8948	10161	5319	6450	8145	11597	8503	6424	2402	7281	4953	6283	3465	19790	5050	6407	9066	2477	7612	7589	9138	9167	4544	7922	3172	3619	8297	2521	4552	6485	5693	14349	4505	6704	9593