GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_010183535.1	NC_071328	NC_071328.1	Caenorhabditis remanei strain PX506 chromosome I; whole genome shotgun sequence.	5310579	5302592	3314544	3319230	600	17247545	0.31	0.31	0.19	0.19	0.38	0.947	0.0015	0.9985	1.9612	1762	1835	3597	2780978	2645266	1742568	1824980	300	8994092	0.31	0.29	0.2	0.21	0.4	0.9064	0.1384	0.8767	1.9622	399	1759	1834	3593	1336197	1122941	919685	997997	4376820	0.3	0.26	0.21	0.23	0.44	0.8736	0.3048	0.7539	1.9507	1443975	1521468	822344	826454	300	4614541	0.31	0.36	0.16	0.17	0.33	0.8336	0.3111	0.7537	1.8679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	36208	36745	12095	24233	19292	34017	21054	37463	19839	23396	39731	55180	31459	17900	20465	26564	26946	20787	35790	25861	20246	12524	24994	40836	20709	14409	11582	29632	22486	38062	31470	22422	20823	16429	25443	22848	17076	8360	15734	14189	13336	9197	51924	10156	14990	26179	7714	33753	20834	22082	24831	12383	12909	11857	11947	26917	5464	11648	15821	17171	38357	9804	23633	25197
GCF_010183535.1	NC_071329	NC_071329.1	Caenorhabditis remanei strain PX506 chromosome II; whole genome shotgun sequence.	6145710	6154167	3826940	3807906	1000	19935723	0.31	0.31	0.19	0.19	0.38	0.9477	0.0032	0.9968	1.9601	2270	2249	4519	2933563	2788660	1835208	1912397	200	9470028	0.31	0.29	0.19	0.21	0.4	0.9065	0.1413	0.8737	1.9611	0	2270	2249	4519	1546984	1308995	1038555	1117368	5011902	0.31	0.26	0.21	0.22	0.43	0.8738	0.301	0.7561	1.9488	1386579	1479665	796653	795029	200	4458126	0.31	0.37	0.15	0.17	0.32	0.8258	0.3346	0.7376	1.8573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	40837	41589	13852	28709	21735	37330	23357	44416	22379	26976	46876	62130	35643	18759	24338	31476	31230	22462	41131	33076	23433	14244	27828	44513	23237	17196	14570	33887	27529	42743	34652	26438	22037	19872	29367	25152	19338	9950	18952	15419	15749	9852	61631	10767	17520	30204	8642	39419	25684	25703	26327	12664	15618	13622	13636	30212	6830	12660	16773	17842	45108	12566	28896	27556
GCF_010183535.1	NC_071330	NC_071330.1	Caenorhabditis remanei strain PX506 chromosome III; whole genome shotgun sequence.	5518853	5516016	3422598	3419582	800	17877849	0.31	0.31	0.19	0.19	0.38	0.9471	0.0007	0.9993	1.9599	1912	1852	3764	2746244	2604622	1709300	1784975	0	8845141	0.31	0.29	0.2	0.21	0.4	0.9062	0.1387	0.8763	1.9617	531	1910	1851	3761	1358164	1139257	922340	995888	4415649	0.31	0.26	0.21	0.22	0.43	0.873	0.305	0.7538	1.9496	1387130	1464244	786347	788468	0	4426189	0.31	0.36	0.15	0.17	0.32	0.8301	0.3222	0.7466	1.8614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	37013	37381	12326	24753	19629	33541	21174	38572	19501	23429	39883	55519	31807	17143	20829	27573	26569	20826	36229	26845	20678	12721	24735	41242	20823	14917	12150	30165	22982	38701	31750	23243	21357	17762	26137	22383	17060	8373	16190	13836	13666	8612	53506	9731	15385	26775	7362	33930	20823	22679	23660	11797	13279	11681	11738	28020	5517	11155	15629	16562	39187	9749	23795	24373
GCF_010183535.1	NC_071331	NC_071331.1	Caenorhabditis remanei strain PX506 chromosome IV; whole genome shotgun sequence.	8113765	8111817	4780357	4783758	1300	25790997	0.31	0.31	0.19	0.19	0.37	0.943	0.0005	0.9995	1.9513	2177	2242	4419	3022798	2907459	1867983	1928239	100	9726579	0.31	0.29	0.2	0.21	0.4	0.9045	0.1439	0.8727	1.9587	1113	2176	2236	4412	1463749	1249113	1012109	1074498	4799469	0.3	0.27	0.21	0.22	0.43	0.8717	0.3073	0.7518	1.9484	1557343	1656700	854851	852608	100	4921602	0.32	0.37	0.15	0.17	0.32	0.8283	0.3273	0.7426	1.8581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	40339	40002	13769	27546	21585	35132	23387	41991	21644	26008	43703	57422	34599	18278	22222	29979	30156	22309	40376	29588	23613	13941	27546	42644	22974	16168	14029	32829	25459	44106	34396	25695	22408	19391	28951	23960	18924	9456	18080	15066	14411	9081	54882	10243	16818	28766	8357	36643	23378	24939	24714	11430	14475	13653	13156	31965	5817	12161	16721	17504	43028	10810	25548	25267
GCF_010183535.1	NC_071332	NC_071332.1	Caenorhabditis remanei strain PX506 chromosome V; whole genome shotgun sequence.	6968690	6943715	4287715	4301037	1300	22502457	0.31	0.31	0.19	0.19	0.38	0.9489	0.0033	0.9967	1.9592	2796	2863	5659	3346342	3275001	2118216	2188512	100	10928171	0.3	0.3	0.2	0.2	0.4	0.9059	0.138	0.8771	1.9598	998	2796	2861	5657	1852804	1661239	1272206	1342181	6128430	0.3	0.27	0.21	0.22	0.42	0.8731	0.2942	0.761	1.9474	1493161	1613342	845754	846032	100	4798389	0.31	0.37	0.15	0.17	0.32	0.8254	0.34	0.7337	1.8574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	51356	47433	18324	37105	26601	43085	29853	56076	27778	33122	54602	70281	43239	21283	29529	38256	39882	28874	52679	46519	29309	17827	34120	52756	28164	22098	20014	43171	36276	51376	43299	34304	28102	26953	36269	29828	23440	11624	25026	18606	18770	11473	70265	12782	22722	38245	11169	45175	32489	31676	29134	14751	20815	17345	15541	36906	8659	14408	19795	19949	53852	15018	34385	30843
GCF_010183535.1	NC_071333	NC_071333.1	Caenorhabditis remanei strain PX506 chromosome X; whole genome shotgun sequence.	6690558	6675208	4062324	4072710	1100	21501900	0.31	0.31	0.19	0.19	0.38	0.951	0.0024	0.9976	1.9568	2097	2122	4219	2622716	2456363	1667552	1675083	0	8421714	0.31	0.29	0.2	0.2	0.4	0.9081	0.1407	0.8745	1.9622	1451	2097	2121	4218	1434826	1183396	1033173	1025356	4676751	0.31	0.26	0.22	0.22	0.44	0.8732	0.3062	0.7524	1.9517	1187187	1272252	633901	649251	0	3742591	0.32	0.37	0.15	0.16	0.31	0.8238	0.3437	0.7301	1.8472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	39041	39050	13288	27922	23175	34289	24684	36724	21404	24234	37461	54097	32093	16225	20878	36297	27052	21536	37144	29528	21932	14073	26345	37494	23703	20866	14296	33136	21832	37573	33671	26647	22621	17560	29904	26544	21650	9382	20791	16271	17054	10432	54574	10023	19247	28029	7579	33817	21050	24574	19449	10698	13410	13686	12607	34744	5569	11391	15517	16455	47287	9486	22410	20455