GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_025231255.1	NC_066611	NC_066611.1	Drosophila biarmipes strain raj3 chromosome X; RU_DBia_V1.1; whole genome shotgun sequence.	7698015	7646098	5776155	5797657	26917925	0.29	0.28	0.21	0.22	0.43	0.9527	0.0052	0.9948	1.9858	1255	1175	2430	5473805	5289954	4369612	4247142	19380513	0.27	0.24	0.25	0.24	0.49	0.917	0.1144	0.8967	1.9814	30034	1077	1079	2156	856528	655301	1165584	1122490	3799903	0.23	0.19	0.29	0.29	0.58	0.8768	0.2618	0.7862	1.9418	22	2181802	2240955	1502074	1438737	7363568	0.28	0.32	0.22	0.19	0.4	0.8688	0.2649	0.783	1.923	0	70	57	127	30174	27264	22433	23025	102896	0.3	0.27	0.21	0.22	0.44	0.8763	0.2598	0.7867	1.9449	165186	169179	112256	112798	559419	0.32	0.34	0.17	0.16	0.33	0.8413	0.2455	0.8011	1.8741	0	15	16	31	431	535	595	761	2322	0.19	0.23	0.25	0.33	0	0.58	0.8965	0.2504	0.7843	1.9611	84	84	37480	37475	23320	29533	127808	0.28	0.29	0.19	0.24	0	0.43	0.9052	0.1499	0.8639	1.9796	22907	33865	5274	12285	26836	44810	20758	9160	24446	22634	12154	17692	13574	21924	13767	24403	10801	29243	21138	7883	46325	12601	20685	19506	43370	25845	8265	10835	6271	23740	25766	9730	17280	6913	16673	28099	23240	25428	16156	45004	34462	31088	11242	38474	24027	8371	14116	13423	8646	14827	22646	28704	3493	16683	19929	27692	2372	25284	28467	10549	21262	2729	9747	18770
GCF_025231255.1	NC_066612	NC_066612.1	Drosophila biarmipes strain raj3 chromosome 2L; RU_DBia_V1.1; whole genome shotgun sequence.	7901047	7908082	5678569	5687276	27174974	0.29	0.29	0.21	0.21	0.42	0.9578	0.0012	0.9988	1.9806	1393	1438	2831	4924310	4753950	3733429	3652450	17064139	0.28	0.26	0.23	0.23	0.46	0.9187	0.1135	0.8977	1.9809	39388	1292	1306	2598	1039140	843416	1143957	1121313	4147826	0.25	0.22	0.26	0.27	0.53	0.8847	0.2466	0.7968	1.9601	4	2076462	2142234	1397924	1357319	6973939	0.31	0.34	0.18	0.17	0.35	0.8542	0.266	0.7827	1.892	0	77	76	153	33706	29633	22266	22493	108098	0.31	0.28	0.2	0.21	0.4	0.8741	0.2653	0.783	1.9307	78012	81839	49732	49716	259299	0.31	0.36	0.17	0.16	0.33	0.8449	0.2705	0.7814	1.8705	0	20	19	39	508	660	746	926	2840	0.18	0.23	0.26	0.33	0	0.59	0.89	0.2616	0.7758	1.9537	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	28194	38467	8219	17157	25323	41871	22354	17279	25339	26136	19644	26849	17517	20101	17625	27883	14736	29769	24941	16230	42019	14473	21085	26181	38754	26688	11785	18820	11312	27779	27918	15111	18754	12391	20414	26288	22756	24694	19013	37928	29734	23445	22741	29517	24857	13748	13823	17868	12232	17260	20668	21869	7973	18846	21607	29225	4089	20168	23291	11200	27192	6092	13079	19496
GCF_025231255.1	NC_066613	NC_066613.1	Drosophila biarmipes strain raj3 chromosome 3L; RU_DBia_V1.1; whole genome shotgun sequence.	8242921	8233395	6024855	6023297	28524468	0.29	0.29	0.21	0.21	0.42	0.9552	0.0007	0.9993	1.9825	1546	1487	3033	5424890	5216062	4163163	4049021	18853136	0.28	0.25	0.24	0.23	0.47	0.9184	0.1191	0.8929	1.9819	45990	1405	1348	2753	1074385	858591	1222496	1186988	4342460	0.25	0.21	0.27	0.27	0.54	0.8808	0.2608	0.7874	1.9541	2	2378412	2465535	1632956	1584835	8061738	0.3	0.34	0.19	0.17	0.36	0.8554	0.2704	0.7797	1.8979	8913	88	76	164	40695	35185	26675	26632	129187	0.31	0.28	0.2	0.2	0.41	0.8739	0.2564	0.7915	1.9324	86225	86407	54335	53863	280830	0.33	0.34	0.17	0.16	0.33	0.8454	0.2679	0.7809	1.8739	0	32	22	54	741	954	1056	1292	4043	0.18	0.24	0.26	0.32	0	0.58	0.8783	0.2516	0.7848	1.9629	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	29042	40382	7916	16770	27195	43991	23403	16471	27911	26280	19513	26597	17361	21418	17592	29524	14669	31669	25973	15206	45829	15372	23018	26213	43529	28705	11469	18498	11394	29986	29333	14738	19508	12047	19990	27819	25129	26932	20425	43136	33415	25308	22399	32540	25971	13590	14234	18519	12118	17909	22053	23888	7852	18876	22807	30397	4363	21444	25074	11524	27554	6492	13625	20663
GCF_025231255.1	NC_066614	NC_066614.1	Drosophila biarmipes strain raj3 chromosome 4; RU_DBia_V1.1; whole genome shotgun sequence.	615417	616005	329026	328775	1889223	0.33	0.33	0.17	0.17	0.35	0.9393	0.0009	0.9991	1.9324	50	56	106	568006	555790	299372	299697	1722865	0.33	0.32	0.18	0.18	0.35	0.9187	0.0589	0.9441	1.9317	16484	35	47	82	79018	62308	52190	52280	245796	0.32	0.26	0.21	0.22	0.42	0.8851	0.2582	0.7868	1.9493	0	263422	267623	131423	131834	794302	0.34	0.37	0.14	0.14	0.28	0.8497	0.1963	0.8365	1.8352	0	13	9	22	7935	7520	4772	4703	24930	0.33	0.28	0.2	0.2	0.39	0.8774	0.2621	0.7857	1.9284	14464	14941	8001	7891	45297	0.31	0.37	0.16	0.16	0.32	0.843	0.2791	0.7807	1.8691	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2248	1894	1068	1336	1462	1257	1091	1931	812	1125	2390	2094	1462	1083	1288	1917	1092	1158	1159	1699	1486	807	828	1602	1827	933	1145	1798	1215	1273	1226	1325	829	1977	1896	1130	1112	700	997	880	1352	682	3233	827	988	1248	557	1144	852	1368	953	758	1768	788	944	1460	658	614	809	675	2558	1269	806	900
GCF_025231255.1	NC_066615	NC_066615.1	Drosophila biarmipes strain raj3 chromosome 2R; RU_DBia_V1.1; whole genome shotgun sequence.	6750993	6729176	5168831	5151383	23800383	0.28	0.28	0.22	0.22	0.43	0.9574	0.0033	0.9967	1.9872	1859	1600	3459	4497642	4320903	3681667	3570223	16070435	0.27	0.25	0.25	0.24	0.49	0.9179	0.1025	0.9069	1.9851	17724	1388	1421	2809	1051946	856770	1219455	1184540	4312711	0.25	0.21	0.27	0.27	0.54	0.8815	0.2564	0.7899	1.9571	10	1738161	1809573	1260215	1213507	6021456	0.29	0.33	0.2	0.18	0.38	0.8549	0.2798	0.7724	1.9097	0	73	66	139	33304	28787	22436	23238	107765	0.32	0.27	0.2	0.21	0.41	0.8709	0.2427	0.7973	1.9385	57758	58971	36770	37390	190889	0.31	0.35	0.17	0.17	0.34	0.8428	0.2789	0.7747	1.8772	0	51	60	111	1459	1824	2206	2685	8174	0.18	0.22	0.27	0.33	0	0.6	0.8883	0.2329	0.7983	1.9554	338	338	9045	8716	11151	11310	40222	0.22	0.22	0.28	0.28	0	0.56	0.9042	0.027	0.9737	1.9898	28838	39227	8183	16447	26592	44057	23268	16263	27044	27207	17953	25007	17083	21818	16990	29647	14471	31678	27265	15414	46800	14978	22751	25280	41664	27981	12024	18347	11011	28875	29065	15450	19259	11795	20443	29236	24476	26587	20441	41766	33152	26970	20886	32818	26741	13439	14453	18308	12280	17551	21907	24179	7496	19014	22224	30011	3979	22437	24690	11808	27015	5932	13461	20909
GCF_025231255.1	NC_066616	NC_066616.1	Drosophila biarmipes strain raj3 chromosome 3R; RU_DBia_V1.1; whole genome shotgun sequence.	9603323	9536407	7208202	7172664	33520596	0.29	0.28	0.22	0.21	0.43	0.957	0.006	0.9941	1.9854	1840	1898	3738	6530633	6311350	5174112	5030199	23046294	0.27	0.25	0.24	0.23	0.47	0.9199	0.1098	0.9004	1.9851	46253	1719	1730	3449	1331394	1071939	1538564	1498338	5440235	0.25	0.21	0.27	0.27	0.54	0.8823	0.251	0.7935	1.9574	56	2685172	2795181	1890310	1830852	9201515	0.3	0.34	0.19	0.17	0.36	0.853	0.2753	0.7762	1.8967	0	72	73	145	43433	37781	28610	29217	139041	0.3	0.27	0.21	0.22	0.43	0.8841	0.2301	0.8067	1.951	86032	85798	55808	57043	284681	0.32	0.34	0.17	0.17	0.34	0.8504	0.2759	0.7759	1.881	5202	38	50	88	1281	1493	1645	2100	6519	0.2	0.23	0.25	0.32	0	0.57	0.8852	0.2234	0.8085	1.9681	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	37452	49998	9635	20853	34666	56299	29044	20135	34446	33915	23882	31524	22042	27195	21886	36806	18300	40205	33404	19017	58020	18930	29096	32902	53356	35273	14428	22592	13810	36968	36446	18377	24176	14628	25725	35577	30990	33575	24993	53613	41916	33484	26224	42143	33630	16171	17760	23347	15330	22456	27934	31079	9265	24096	28687	38715	5043	27851	31613	14292	33819	7420	17087	25715