GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_011750605.1	NC_046604	NC_046604.1	Drosophila busckii strain San Diego stock center; stock number 13000-0081.31 chromosome 2L; ASM1175060v1; whole genome shotgun sequence.	5816391	5813706	3591152	3590465	300000	19111714	0.3	0.3	0.19	0.19	0.02	0.38	0.9463	0.0003	0.9997	1.951	1001	1046	2047	3362708	3272100	2218471	2220328	95000	11168607	0.29	0.27	0.21	0.22	0.43	0.9102	0.1197	0.8918	1.969	15072	886	915	1801	738286	634335	683695	717149	2773465	0.27	0.24	0.23	0.25	0.48	0.8824	0.2465	0.797	1.9641	0	1331511	1374121	756047	740986	60000	4262665	0.32	0.36	0.16	0.16	0.31	0.8321	0.2839	0.7707	1.8517	0	26	28	54	7515	6968	4749	5082	24314	0.31	0.29	0.19	0.21	0.4	0.8662	0.277	0.7734	1.9317	25013	26527	15270	15540	0	82350	0.33	0.38	0.14	0.16	0.29	0.8339	0.2923	0.7718	1.8291	15	15	30	391	513	572	701	2177	0.18	0.24	0.26	0.32	0	0.58	0.8908	0.2554	0.781	1.9543	1	1	27	25	32	35	119	0.23	0.21	0.27	0.29	0	0.56	0.9044	0.0832	0.9201	1.9872	22849	23150	6119	11319	25384	23759	21244	16058	9169	17681	20275	16415	12458	12603	10646	15467	8678	19246	10888	16619	27217	8531	10436	19632	26982	9321	10200	19343	14999	11423	13204	10349	10522	15058	17925	12357	12497	9090	10834	18644	26493	21337	18737	20697	20782	10023	4781	9888	10399	15830	10695	19249	9768	7698	8986	17442	3828	7175	10306	11308	23373	6490	9597	8999
GCF_011750605.1	NC_046605	NC_046605.1	Drosophila busckii strain San Diego stock center; stock number 13000-0081.31 chromosome 2R; ASM1175060v1; whole genome shotgun sequence.	7314265	7301985	4591998	4585148	285000	24078396	0.3	0.3	0.19	0.19	0.01	0.38	0.9466	0.0016	0.9984	1.9557	1462	1478	2940	4385436	4249248	2888604	2897132	65000	14485420	0.29	0.28	0.21	0.22	0.43	0.9109	0.115	0.8955	1.9709	13169	1386	1329	2715	1130868	967905	1032292	1073914	4204979	0.27	0.24	0.23	0.25	0.48	0.8808	0.2482	0.7954	1.9632	793	1877195	1945408	1077936	1056487	45000	6002026	0.32	0.36	0.16	0.16	0.32	0.8315	0.2877	0.7672	1.8571	25398	21	40	61	9510	8446	5449	5988	29393	0.32	0.29	0.17	0.21	0.39	0.8612	0.2858	0.7714	1.9186	24951	25880	13965	14558	0	79354	0.33	0.38	0.14	0.15	0.29	0.8255	0.2738	0.778	1.8289	37	50	87	1210	1467	1678	2049	6404	0.19	0.23	0.26	0.32	0	0.58	0.8917	0.2208	0.8081	1.9648	1	1	27	25	32	35	119	0.23	0.21	0.27	0.29	0	0.56	0.9044	0.0832	0.9201	1.9872	33875	34590	10275	17168	38471	34508	31583	25290	14183	25686	30725	25319	19115	19230	16171	24804	13812	28593	16547	26390	39537	13366	15233	29052	39089	14596	15572	28787	22642	18014	20142	16622	15800	22831	27302	19442	19236	13672	17203	28462	38653	31611	29535	30711	30054	15931	7251	15581	15669	24023	16049	28548	15363	11559	13144	25580	6029	10848	15366	16994	36841	10464	15060	14633
GCF_011750605.1	NC_046606	NC_046606.1	Drosophila busckii strain San Diego stock center; stock number 13000-0081.31 chromosome 3L; ASM1175060v1; whole genome shotgun sequence.	6113357	6097822	4032987	4045064	170000	20459230	0.3	0.3	0.2	0.2	0.01	0.39	0.948	0.0028	0.9972	1.9654	1226	1219	2445	3683825	3535325	2579241	2562968	50000	12411359	0.29	0.27	0.22	0.22	0.44	0.9126	0.1199	0.8917	1.9762	28303	1097	1090	2187	874754	734982	829077	850535	3289348	0.27	0.24	0.24	0.25	0.49	0.8811	0.2579	0.7895	1.962	0	1430039	1469660	880942	854542	20000	4655183	0.31	0.35	0.17	0.17	0.33	0.8352	0.286	0.7685	1.8726	0	33	27	60	12868	12387	8474	8728	42457	0.31	0.3	0.19	0.2	0.39	0.8574	0.2797	0.7726	1.9201	48657	54617	31943	32270	5000	172487	0.32	0.38	0.14	0.15	0.3	0.8283	0.2797	0.7773	1.8262	18	11	29	416	510	575	704	2205	0.19	0.23	0.26	0.32	0	0.58	0.8729	0.2357	0.799	1.9627	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	26088	28175	7707	13421	30050	28000	25334	18173	11252	19442	22839	19114	14780	15519	12456	19654	10447	22796	12844	18505	32377	10427	12723	22284	32726	12046	12053	21564	17045	14103	15665	12081	12771	16499	21294	15620	15646	11523	13332	23814	31539	24813	21242	24815	23545	11943	5623	12332	11788	18419	12803	22987	10462	9979	10618	21363	4623	8514	12554	13327	28589	7509	11569	11006
GCF_011750605.1	NC_046607	NC_046607.1	Drosophila busckii strain San Diego stock center; stock number 13000-0081.31 chromosome 3R; ASM1175060v1; whole genome shotgun sequence.	6988873	6988942	4703337	4700834	115000	23496986	0.3	0.3	0.2	0.2	0	0.4	0.9498	0.0003	0.9997	1.9696	1542	1416	2958	4364239	4197229	3048767	3045396	15000	14670631	0.29	0.27	0.21	0.22	0.43	0.9129	0.1155	0.8953	1.9753	11051	1466	1327	2793	1223204	1033271	1118793	1158712	4533980	0.27	0.24	0.23	0.25	0.48	0.8822	0.2427	0.7998	1.9656	244	1798165	1871564	1121866	1095321	15000	5901916	0.32	0.36	0.16	0.16	0.33	0.8326	0.282	0.7707	1.8681	0	19	35	54	7942	6806	5031	4992	24771	0.31	0.28	0.21	0.2	0.41	0.864	0.2465	0.7933	1.94	47860	49171	30655	30842	0	158528	0.33	0.36	0.15	0.16	0.31	0.8293	0.2755	0.7796	1.8443	28	21	49	709	844	918	1184	3655	0.2	0.23	0.25	0.32	0	0.57	0.8827	0.2389	0.7962	1.9656	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	37206	36958	11028	19166	43564	35729	34633	26445	14521	27646	32830	26574	21619	20626	17821	26887	14840	30247	17162	26759	41633	14443	16366	30798	42254	15504	17223	30874	23361	19020	21572	17519	16993	23747	31570	20426	21306	14002	18268	30704	42242	33455	31263	33612	33459	17135	7989	17253	17362	25967	17331	30854	15985	12861	14922	29215	6549	11740	16630	18089	40314	11448	17056	15189
GCF_011750605.1	NC_046608	NC_046608.1	Drosophila busckii strain San Diego stock center; stock number 13000-0081.31 chromosome X; ASM1175060v1; whole genome shotgun sequence.	6935035	6925053	4344124	4342952	145000	22692164	0.31	0.31	0.19	0.19	0.01	0.38	0.9449	0.0009	0.9991	1.9583	1072	1078	2150	4116438	3986545	2802738	2754139	55000	13714860	0.29	0.27	0.22	0.22	0.44	0.909	0.1143	0.8969	1.9735	16217	987	996	1983	852548	706586	883885	895886	3338905	0.27	0.23	0.25	0.26	0.51	0.8802	0.2515	0.7944	1.9628	0	1674087	1725929	973876	932557	45000	5351449	0.31	0.35	0.18	0.16	0.34	0.8399	0.3041	0.7574	1.8753	0	42	25	67	12808	11015	8167	7958	39948	0.32	0.28	0.2	0.2	0.4	0.8567	0.3131	0.7533	1.91	125299	129275	71865	71893	5000	403332	0.31	0.38	0.15	0.16	0.31	0.8415	0.2878	0.7738	1.8469	15	13	28	404	468	534	661	2067	0.2	0.23	0.26	0.32	0	0.58	0.8883	0.1968	0.8275	1.9668	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	26421	26223	6287	11965	33694	30260	25519	17179	11691	19726	22205	16730	15033	16935	11917	19536	10150	22724	12390	16038	34759	10098	13518	22842	36834	12535	10797	20153	15327	13571	16658	10784	13821	15048	21352	16018	16035	11703	11656	26699	35986	29777	17463	28291	25138	10613	6003	10549	10826	19470	14943	27046	8573	8521	10337	22273	3572	10474	15743	14447	28170	6071	10932	12720
GCF_011750605.1	NC_046609	NC_046609.1	Drosophila busckii strain San Diego stock center; stock number 13000-0081.31 chromosome 4; ASM1175060v1; whole genome shotgun sequence.	325347	325057	170878	172641	5028	998951	0.33	0.33	0.17	0.17	0.01	0.34	0.9405	0.0056	0.9944	1.9276	50	34	84	229055	214973	123366	122926	0	690320	0.33	0.31	0.18	0.18	0.36	0.9172	0.0898	0.9165	1.9383	156	47	33	80	81042	64799	55164	55072	256077	0.32	0.26	0.21	0.22	0.42	0.8855	0.2546	0.7885	1.9541	0	96499	101184	44507	44037	0	286227	0.34	0.39	0.13	0.14	0.27	0.8335	0.2566	0.7893	1.8079	0	2	0	2	754	679	430	396	2259	0.31	0.29	0.21	0.19	0.39	0.8764	0.1441	0.8697	1.9478	85	120	40	44	0	289	0.3	0.42	0.14	0.15	0.29	0.8213	0.3153	0.7377	1.8249	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2448	1900	1155	1343	1818	1253	1409	2022	849	1168	2675	1859	1773	1055	1376	1667	1025	1265	1066	1524	1445	865	840	1734	1888	871	1213	1957	1471	1170	1382	1163	855	2153	2075	1067	1226	578	1086	905	1666	834	2788	911	1149	1194	513	1273	923	1541	1023	960	1759	821	909	1636	625	618	893	714	2802	1156	957	926