Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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GCF_004354385.1 | NC_047625 | NC_047625.1 | Drosophila innubila isolate TH190305 chromosome 4; UK_Dinn_1.0; whole genome shotgun sequence. | 658696 | 658660 | 346602 | 361851 | 1220 | 2027029 | 0.32 | 0.32 | 0.17 | 0.18 | 0 | 0.35 | 0.9346 | 0.0216 | 0.9789 | 1.9334 | 54 | 55 | 109 | 338085 | 316729 | 170905 | 175930 | 200 | 1001849 | 0.33 | 0.31 | 0.18 | 0.19 | 0 | 0.36 | 0.9086 | 0.1102 | 0.9005 | 1.9298 | 0 | 43 | 47 | 90 | 80799 | 62466 | 58008 | 59010 | 0 | 260283 | 0.31 | 0.25 | 0.21 | 0.22 | 0 | 0.44 | 0.8826 | 0.2571 | 0.7849 | 1.9543 | 0 | 165961 | 167297 | 71364 | 73116 | 0 | 477738 | 0.35 | 0.38 | 0.13 | 0.13 | 0 | 0.26 | 0.838 | 0.2534 | 0.794 | 1.7951 | 0 | 10 | 5 | 15 | 2312 | 2403 | 1452 | 2089 | 0 | 8256 | 0.3 | 0.29 | 0.16 | 0.25 | 0 | 0.41 | 0.8519 | 0.3809 | 0.7164 | 1.9152 | 0 | 4706 | 4510 | 2064 | 2061 | 0 | 13341 | 0.3 | 0.38 | 0.14 | 0.19 | 0 | 0.33 | 0.8265 | 0.4496 | 0.6669 | 1.856 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2520 | 1827 | 883 | 1114 | 1817 | 1456 | 1213 | 1965 | 1112 | 1412 | 2730 | 1846 | 1911 | 1087 | 1251 | 1793 | 955 | 1367 | 1085 | 1218 | 1527 | 867 | 876 | 2023 | 1876 | 859 | 843 | 1902 | 1413 | 1446 | 1804 | 887 | 1061 | 1969 | 2268 | 1133 | 1175 | 700 | 929 | 1125 | 1685 | 792 | 2469 | 982 | 1199 | 1176 | 521 | 1497 | 894 | 1643 | 1307 | 932 | 1381 | 742 | 1140 | 1784 | 381 | 907 | 1109 | 722 | 2785 | 955 | 1070 | 1255 |
GCF_004354385.1 | NC_047626 | NC_047626.1 | Drosophila innubila isolate TH190305 chromosome X; UK_Dinn_1.0; whole genome shotgun sequence. | 12991219 | 12964187 | 7257023 | 7264305 | 2168 | 40478902 | 0.32 | 0.32 | 0.18 | 0.18 | 0 | 0.36 | 0.9448 | 0.0015 | 0.9985 | 1.9416 | 1213 | 1153 | 2366 | 7088224 | 6999846 | 4140491 | 4076469 | 550 | 22305580 | 0.31 | 0.29 | 0.2 | 0.2 | 0 | 0.4 | 0.9125 | 0.1048 | 0.9048 | 1.9578 | 81157 | 1072 | 1015 | 2087 | 973003 | 804241 | 914516 | 940135 | 0 | 3631895 | 0.27 | 0.23 | 0.24 | 0.25 | 0 | 0.49 | 0.8825 | 0.2514 | 0.7945 | 1.9637 | 0 | 3781840 | 3897655 | 1977068 | 1904211 | 320 | 11561094 | 0.33 | 0.36 | 0.16 | 0.15 | 0 | 0.32 | 0.8536 | 0.2667 | 0.7865 | 1.8562 | 0 | 98 | 95 | 193 | 38060 | 32208 | 22996 | 22703 | 0 | 115967 | 0.33 | 0.28 | 0.19 | 0.19 | 0 | 0.39 | 0.8463 | 0.3879 | 0.7064 | 1.8623 | 0 | 364067 | 367299 | 197054 | 196551 | 100 | 1125071 | 0.33 | 0.36 | 0.16 | 0.15 | 0 | 0.31 | 0.847 | 0.2622 | 0.79 | 1.8455 | 0 | 18 | 17 | 35 | 479 | 589 | 682 | 863 | 0 | 2613 | 0.19 | 0.23 | 0.26 | 0.33 | 0 | 0.59 | 0.889 | 0.2462 | 0.7901 | 1.9558 | 0 | 4 | 0 | 4 | 181 | 212 | 139 | 184 | 0 | 716 | 0.25 | 0.3 | 0.19 | 0.26 | 0 | 0.45 | 0.8839 | 0.2181 | 0.8049 | 1.9842 | 0 | 29370 | 26584 | 7557 | 12364 | 32671 | 31888 | 20141 | 21624 | 16081 | 21017 | 28017 | 21649 | 18903 | 17861 | 14827 | 24428 | 12114 | 24578 | 15399 | 17355 | 30468 | 14457 | 15939 | 29380 | 34162 | 14448 | 9633 | 25416 | 16602 | 20143 | 22595 | 11114 | 16749 | 14571 | 28161 | 17036 | 18372 | 12610 | 12455 | 26423 | 28989 | 20340 | 21514 | 24865 | 22637 | 14219 | 7638 | 12666 | 14083 | 21966 | 17616 | 20532 | 9962 | 9618 | 12621 | 23031 | 3196 | 13716 | 16867 | 16404 | 34436 | 6927 | 12876 | 16375 |