GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_004382145.1	NC_046667	NC_046667.1	Drosophila mauritiana strain mau12 chromosome 2L; ASM438214v1; whole genome shotgun sequence.	6995967	6987042	5116225	5128430	400	24228064	0.29	0.29	0.21	0.21	0.42	0.9588	0.0018	0.9982	1.9827	1361	1327	2688	4345912	4199494	3303147	3255338	15103891	0.28	0.26	0.23	0.23	0.46	0.9195	0.1138	0.8972	1.9824	30479	1296	1226	2522	1055504	866394	1086934	1080777	4089609	0.26	0.22	0.26	0.26	0.52	0.8862	0.2415	0.8004	1.9638	4	1827831	1903653	1255631	1227605	6214720	0.31	0.34	0.18	0.17	0	0.35	0.8528	0.2628	0.7846	1.8945	37	49	86	22983	20403	15844	16506	75736	0.3	0.28	0.21	0.21	0	0.42	0.874	0.2682	0.781	1.9405	50862	53332	34719	34532	173445	0.3	0.36	0.18	0.17	0	0.34	0.8376	0.3132	0.7503	1.8804	22	19	41	529	688	792	976	2985	0.18	0.23	0.26	0.33	0	0.59	0.8887	0.2576	0.7785	1.9522	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	29271	35874	9070	17264	26237	38283	21887	19482	23994	25813	23137	27793	18350	20091	17575	27259	14454	28609	24473	17337	38218	15106	19492	28267	37046	23352	13033	20757	13466	27342	27660	15710	18072	13980	21153	24037	22523	20247	18242	32916	28635	22496	24881	26950	24467	14617	11401	17841	12776	18547	20244	21324	9286	16348	19765	29097	4506	18352	21880	11987	27960	7142	13311	19739
GCF_004382145.1	NC_046668	NC_046668.1	Drosophila mauritiana strain mau12 chromosome 2R; ASM438214v1; whole genome shotgun sequence.	6660770	6641670	5116243	5115877	500	23535060	0.28	0.28	0.22	0.22	0.43	0.957	0.0015	0.9985	1.9877	1573	1587	3160	4482151	4331350	3594203	3520912	15928616	0.27	0.25	0.24	0.24	0.48	0.9195	0.1097	0.9004	1.9851	26466	1437	1372	2809	1094388	899072	1165720	1149213	4308393	0.26	0.22	0.26	0.26	0.52	0.8836	0.2504	0.7939	1.9616	2	1818260	1898810	1323607	1287723	6328400	0.29	0.33	0.19	0.18	0	0.37	0.8532	0.2706	0.7783	1.9083	66	31	97	24223	20630	15956	16022	76831	0.32	0.28	0.2	0.21	0	0.41	0.8752	0.2625	0.7842	1.9342	36857	38001	23418	23607	121883	0.32	0.35	0.17	0.16	0	0.33	0.8493	0.2589	0.7881	1.8764	53	46	99	1303	1625	1961	2399	7288	0.18	0.22	0.27	0.33	0	0.6	0.8874	0.2357	0.796	1.955	0	88	88	2303	2204	2903	3060	10470	0.22	0.21	0.28	0.29	0	0.57	0.9036	0.0482	0.953	1.9855	30289	38665	9474	17386	27723	40914	23391	19500	26018	26758	22071	27761	18067	21442	17630	29084	14757	30602	26779	17867	42525	15721	20854	28315	39544	25518	13393	20896	13365	28596	29247	16194	18880	13816	21585	26929	23930	21823	20553	36968	31664	25503	24824	29500	26187	15007	11984	18419	12931	19112	21349	23277	9095	17053	20131	29623	4598	20160	23310	12974	28789	7382	13779	21427
GCF_004382145.1	NC_046669	NC_046669.1	Drosophila mauritiana strain mau12 chromosome 3L; ASM438214v1; whole genome shotgun sequence.	7518337	7557780	5531648	5535526	400	26143691	0.29	0.29	0.21	0.21	0.42	0.9584	0.003	0.997	1.983	1435	1464	2899	4977375	4786372	3783070	3706371	17253188	0.28	0.26	0.23	0.23	0.46	0.9193	0.115	0.8961	1.9827	37715	1356	1359	2715	1103931	895767	1150238	1136382	4286318	0.26	0.22	0.26	0.26	0.52	0.8834	0.2553	0.7917	1.959	883	2166484	2237918	1487898	1444689	7336989	0.3	0.34	0.18	0.17	0	0.35	0.854	0.2663	0.7821	1.897	33	52	85	23846	20941	17108	17389	79284	0.31	0.27	0.21	0.21	0	0.42	0.8763	0.2621	0.785	1.9399	63382	68195	44823	44061	220461	0.31	0.35	0.17	0.17	0	0.34	0.8613	0.267	0.7858	1.8788	32	17	49	682	849	961	1159	3651	0.19	0.23	0.26	0.32	0	0.58	0.88	0.2345	0.7985	1.9642	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30379	38751	9549	17753	28046	39750	23743	19758	26081	25695	23528	28388	18409	20676	18188	28887	14721	30194	24979	17591	40791	15946	20741	29144	40194	25482	13257	21415	14042	30238	28952	15795	18374	13944	21199	25101	23870	21933	19786	36920	31340	23292	25626	28602	24847	15190	11602	18636	12950	19213	21303	22390	9415	16898	20761	30196	4857	18873	23241	12625	29519	7510	13873	20952
GCF_004382145.1	NC_046670	NC_046670.1	Drosophila mauritiana strain mau12 chromosome 3R; ASM438214v1; whole genome shotgun sequence.	8179295	8174136	6261568	6257163	700	28872862	0.28	0.28	0.22	0.22	0.43	0.9582	0.0007	0.9993	1.9872	1787	1803	3590	5611934	5410998	4462785	4361944	19847661	0.28	0.25	0.24	0.23	0.47	0.921	0.1105	0.9	1.9862	24876	1698	1672	3370	1347329	1098636	1437989	1424114	5308068	0.26	0.22	0.26	0.27	0.53	0.885	0.2452	0.7979	1.9628	52	2248576	2344265	1618144	1559848	7770833	0.3	0.34	0.19	0.18	0	0.36	0.8541	0.2666	0.7812	1.9021	39	45	84	22049	20326	16131	16464	74970	0.29	0.27	0.22	0.22	0	0.44	0.8847	0.2501	0.7934	1.9552	70573	72525	52863	51876	247837	0.29	0.34	0.18	0.19	0	0.37	0.8623	0.2879	0.7717	1.9011	42	40	82	1202	1398	1523	1961	6084	0.2	0.23	0.25	0.32	0	0.57	0.8852	0.2268	0.8058	1.9685	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	38258	47707	11309	21740	34996	50682	28650	23469	31647	32689	27660	33944	22950	26587	22149	35696	18296	38014	31868	21419	51340	19508	26011	35364	49183	31257	16126	25770	15970	36428	35867	19215	22943	16652	26864	32525	29550	26983	24406	45961	39227	30702	29441	37158	32397	17933	14736	22678	16051	23611	27205	29092	10893	20837	25422	37641	5590	24967	29517	15761	35497	8551	17075	25684
GCF_004382145.1	NC_046671	NC_046671.1	Drosophila mauritiana strain mau12 chromosome 4; ASM438214v1; whole genome shotgun sequence.	379323	378930	200343	202004	0	1160600	0.33	0.33	0.17	0.17	0.35	0.9455	0.0046	0.9954	1.9311	39	51	90	305803	291670	158995	158096	914564	0.34	0.32	0.17	0.17	0.35	0.918	0.071	0.9336	1.9258	0	34	45	79	79137	62815	51184	51147	244283	0.32	0.26	0.2	0.21	0.42	0.8831	0.2514	0.7897	1.9492	0	136620	142045	66550	67025	412240	0.35	0.38	0.14	0.14	0	0.28	0.8402	0.2184	0.8189	1.8246	5	4	9	4015	3687	2236	1976	11914	0.34	0.31	0.17	0.17	0	0.35	0.8763	0.1991	0.8309	1.9116	2068	2164	770	742	5744	0.36	0.39	0.13	0.12	0	0.25	0.8448	0.2071	0.8221	1.7897	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2250	1939	1045	1254	1432	1143	1091	2001	887	1123	2494	2076	1509	1029	1277	1834	1088	1042	1181	1670	1410	771	818	1564	1704	870	1202	1841	1284	1299	1256	1317	837	1943	1845	1083	1104	685	1015	793	1335	577	3357	740	990	1200	606	1114	910	1478	949	785	1811	740	820	1440	717	637	780	639	2536	1306	879	906
GCF_004382145.1	NC_046672	NC_046672.1	Drosophila mauritiana strain mau12 chromosome X; ASM438214v1; whole genome shotgun sequence.	6562965	6625181	5013314	5019981	800	23222241	0.28	0.29	0.22	0.22	0.43	0.9566	0.0054	0.9946	1.9866	1151	1211	2362	4425738	4246858	3534700	3452889	15660185	0.27	0.25	0.24	0.24	0.48	0.919	0.1121	0.8987	1.9858	19707	1058	1122	2180	921477	728851	1070156	1057115	3777599	0.25	0.2	0.27	0.28	0.55	0.8834	0.2473	0.7972	1.9583	22	1617862	1677279	1148718	1099496	5543355	0.29	0.33	0.21	0.18	0	0.39	0.8664	0.2672	0.7811	1.9249	35	41	76	17882	15223	12710	12551	58366	0.31	0.26	0.22	0.21	0	0.42	0.8749	0.2738	0.7787	1.9398	98480	101118	71465	72505	343568	0.3	0.34	0.18	0.17	0	0.35	0.8506	0.2686	0.782	1.8884	12	10	22	327	396	411	540	1674	0.2	0.24	0.24	0.32	0	0.56	0.9013	0.2556	0.7807	1.9683	21	8	29	14368	14066	8456	10857	47747	0.28	0.29	0.19	0.24	0	0.43	0.9002	0.1554	0.8592	1.9778	25896	32554	6946	13768	27093	38582	20261	13844	22667	22621	18758	21643	15828	20618	14869	24899	11769	27486	20993	11727	38871	14199	17945	25072	39206	22792	10185	15874	9633	24304	27065	11541	17003	9792	18766	23996	21900	19048	15760	36278	31275	26626	15940	31568	23355	11180	11157	15101	10072	17020	21423	25093	5730	13837	17962	27685	3367	20627	24533	12352	24322	4519	10875	19204
NA	NC_005779	NC_005779.1	Drosophila mauritiana mitochondrion; complete genome.	5869	5759	1893	1443	0	14964	0.39	0.38	0.13	0.1	0.22	0.888	0.1444	0.8718	1.7625	9	4	13	3590	4997	1228	1358	11173	0.33	0.45	0.11	0.11	0.22	0.8478	0.3346	0.7251	1.7271	7	2	0	2	618	783	271	254	1926	0.32	0.4	0.14	0.13	0.27	0.8773	0.1431	0.8699	1.8405	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	5	9	231	234	60	83	608	0.38	0.39	0.1	0.14	0	0.23	0.8334	0.2981	0.7609	1.7646	0	1	1	544	554	83	142	1323	0.41	0.42	0.06	0.11	0	0.17	0.8285	0.2713	0.7832	1.6493	2	1	26	20	11	1	24	53	0	0	29	9	22	0	3	5	5	1	4	51	0	13	0	14	0	2	4	2	25	32	8	4	1	20	19	1	8	2	6	2	1	0	8	0	1	15	0	5	3	18	0	0	76	15	0	15	0	1	0	1	15	2	26	10