GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	fr_gene_N Frequency of 'N' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000001215.4	NC_004354	NC_004354.4	Drosophila melanogaster chromosome X.	6732793	6774766	4975870	4992722	66120	23542271	0.29	0.29	0.21	0.21	0	0.42	0.9562	0.0048	0.9952	1.982	1275	1352	2627	5489052	5310886	4121948	4054354	0	18976240	0.28	0.26	0.23	0.23	0	0.46	0.9177	0.1161	0.8958	1.9824	44126	1068	1077	2145	937701	747101	1052306	1045636	3782744	0.25	0.21	0.27	0.27	0.54	0.8842	0.2436	0.7995	1.961	0	1650528	1716187	1134854	1088624	0	5590193	0.29	0.33	0.2	0.18	0	0.38	0.8644	0.2667	0.7814	1.916	0	191	219	410	102213	90833	76987	75865	345898	0.3	0.26	0.22	0.22	0	0.44	0.8779	0.2681	0.7831	1.9454	772	364911	373006	252083	256803	1246803	0.31	0.34	0.18	0.17	0	0.35	0.859	0.2683	0.7815	1.8955	16	8	24	355	426	445	593	1819	0.2	0.24	0.24	0.33	0	0.57	0.9026	0.2527	0.7827	1.9677	1	1	2	39	38	33	43	153	0.23	0.29	0.17	0.3	0	0.47	0.8587	0.4901	0.6432	1.9254	26286	32225	7564	13431	27532	37375	20152	15393	21965	22692	20299	22116	16525	20392	15225	24291	12222	26966	20186	12995	36998	14820	17372	25855	38530	21891	11004	16940	10786	23917	26440	11867	16699	10695	19478	22975	21519	18023	15568	35225	30713	25714	17402	30411	23247	11993	10657	14991	10419	17771	21483	24359	6562	13479	17904	27673	3567	19995	23814	12650	26039	5016	10927	19366
GCF_000001215.4	NT_033779	NT_033779.5	Drosophila melanogaster chromosome 2L.	6853032	6836080	4912017	4912383	200	23513712	0.29	0.29	0.21	0.21	0	0.42	0.9581	0.0013	0.9987	1.9804	1790	1666	3456	4854906	4678207	3576667	3530991	0	16640771	0.29	0.26	0.23	0.23	0	0.45	0.9164	0.1259	0.8878	1.9792	7248	1338	1266	2604	1070121	880521	1077280	1075200	4103122	0.26	0.22	0.25	0.26	0.51	0.8869	0.2405	0.8014	1.965	272	1811348	1880674	1210694	1184321	0	6087037	0.31	0.35	0.18	0.17	0	0.34	0.8517	0.2629	0.7844	1.8901	3792	410	348	758	160435	138700	120828	120413	540376	0.3	0.26	0.22	0.22	0	0.44	0.8863	0.2374	0.8027	1.9579	0	60688	62487	41218	40845	205238	0.31	0.35	0.17	0.17	0	0.34	0.843	0.2893	0.7669	1.8773	22	19	41	529	701	783	973	2986	0.18	0.24	0.26	0.33	0	0.58	0.8905	0.265	0.7729	1.9536	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	29468	36984	9684	17904	26529	37617	22294	20617	23357	25440	24084	28998	18661	19880	17733	26755	15020	28393	24166	18102	36851	15659	18834	28757	36059	23164	13283	21309	14122	27324	27685	15931	17983	14536	21704	23552	22008	19663	18318	32720	27951	22004	26416	26448	24155	15731	10989	17650	12812	18941	20254	21024	9883	16274	19162	29156	4538	17783	21497	12578	28387	7456	13160	19560
GCF_000001215.4	NT_033778	NT_033778.4	Drosophila melanogaster chromosome 2R.	7272860	7235562	5395216	5376598	6700	25286936	0.29	0.29	0.21	0.21	0	0.43	0.9541	0.0043	0.9957	1.984	1790	1807	3597	5077180	4924470	3913275	3846611	6100	17767636	0.28	0.26	0.23	0.23	0	0.46	0.9186	0.1109	0.8993	1.9835	20486	1410	1331	2741	1092155	899417	1137905	1128221	4257698	0.26	0.22	0.26	0.26	0.52	0.8843	0.2487	0.7952	1.963	0	2011793	2110262	1424941	1392592	100	6939688	0.3	0.34	0.19	0.18	0	0.36	0.8518	0.2725	0.7771	1.9029	0	304	247	551	132173	121808	101333	100922	456236	0.29	0.27	0.22	0.22	0	0.43	0.8847	0.2227	0.8146	1.9528	1397	35043	37192	24087	23419	119741	0.31	0.34	0.18	0.17	0	0.34	0.8444	0.2685	0.7817	1.8831	50	48	98	1297	1619	1937	2380	7233	0.18	0.22	0.27	0.33	0	0.6	0.8886	0.2372	0.795	1.9556	0	96	96	2816	3087	3646	3409	12958	0.22	0.24	0.28	0.26	0	0.54	0.9043	0.0797	0.9238	1.9929	30200	37772	9837	17343	27670	39404	22957	20122	25049	26622	22805	27773	18223	21172	17475	28404	14778	29582	25767	18691	40590	15864	20038	28288	38470	24751	13677	21464	13932	28079	28525	16278	18418	14127	21931	25787	23221	20918	20049	35677	30969	24513	25711	28643	25675	15159	11547	18594	13074	19167	21223	22655	9724	16448	20000	29248	4845	19602	22667	13055	28986	7757	13909	21150
GCF_000001215.4	NT_037436	NT_037436.4	Drosophila melanogaster chromosome 3L.	8143548	8198331	5825673	5824515	118160	28110227	0.29	0.29	0.21	0.21	0	0.41	0.9578	0.0035	0.9966	1.9774	1713	1727	3440	5569293	5352994	4082082	4015719	0	19020088	0.29	0.26	0.23	0.22	0	0.45	0.917	0.1243	0.8888	1.98	66752	1328	1343	2671	1112546	904274	1135737	1124312	4276869	0.26	0.22	0.26	0.26	0.52	0.8844	0.2529	0.7929	1.9603	0	2264720	2342469	1509914	1474411	0	7591514	0.31	0.35	0.18	0.17	0	0.35	0.8527	0.2672	0.7814	1.8918	0	328	326	654	160882	143372	122106	121784	548144	0.3	0.26	0.22	0.22	0	0.44	0.8884	0.2336	0.8056	1.9571	6	81197	81419	53070	53801	269487	0.31	0.35	0.17	0.16	0	0.34	0.8461	0.2739	0.7765	1.8785	31	17	48	667	836	935	1130	3568	0.19	0.23	0.26	0.32	0	0.58	0.8793	0.2382	0.7955	1.9647	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30553	38387	9944	17639	27808	38642	23599	20567	25587	25434	24457	28432	18524	20826	18291	28840	14857	29791	24582	18079	39747	16223	20225	29559	39812	24879	14024	22136	14440	29393	28649	16330	18188	14490	21783	24231	23358	21057	19548	36092	31120	22779	26898	27731	24381	15500	11241	18896	13018	19459	21385	21816	10208	16351	20697	30503	5252	18634	22753	12750	29831	8009	13828	20761
GCF_000001215.4	NT_033777	NT_033777.3	Drosophila melanogaster chromosome 3R.	9205526	9197619	6833716	6817898	24572	32079331	0.29	0.29	0.21	0.21	0	0.43	0.9547	0.0016	0.9984	1.9837	2072	2109	4181	7043161	6804713	5291223	5201153	8800	24349050	0.28	0.26	0.23	0.23	0	0.46	0.9197	0.1141	0.8972	1.9842	77449	1652	1656	3308	1348654	1101286	1413204	1402686	5265830	0.26	0.22	0.26	0.26	0.52	0.886	0.2433	0.799	1.9645	0	2325361	2421456	1619872	1572534	0	7939223	0.3	0.34	0.18	0.17	0	0.36	0.8532	0.2689	0.7796	1.897	0	343	341	684	176538	158354	137081	134828	606801	0.29	0.26	0.22	0.23	0	0.45	0.8862	0.2324	0.8087	1.9574	13	100402	100764	67497	67496	336159	0.31	0.34	0.18	0.17	0	0.35	0.8538	0.2494	0.7964	1.8898	37	42	79	1156	1349	1467	1893	5865	0.2	0.23	0.25	0.32	0	0.57	0.8852	0.2281	0.8049	1.9681	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	38225	46892	11703	21454	34929	49524	28360	24241	30652	32113	28432	34120	22987	26246	22243	35157	18453	37067	31151	22173	49520	19738	25179	35677	48658	30677	16805	26302	16586	35914	35336	19547	22502	16942	27103	31672	28956	26145	24113	44656	38691	29904	30478	36027	31828	18214	14325	22420	16126	23721	26897	28336	11377	20395	24820	37139	5863	24186	28850	15693	36031	9180	17016	25622
GCF_000001215.4	NC_004353	NC_004353.4	Drosophila melanogaster chromosome 4.	425241	436669	232566	236655	17000	1348131	0.32	0.32	0.17	0.18	0.01	0.35	0.9443	0.022	0.9783	1.9298	52	55	107	356646	341459	185978	184679	17000	1085762	0.33	0.31	0.18	0.18	0.01	0.35	0.9145	0.089	0.9183	1.9234	0	34	46	80	81553	64794	52625	52431	251403	0.32	0.26	0.2	0.21	0.41	0.8842	0.2518	0.7895	1.948	0	147371	153123	71766	71384	0	443644	0.35	0.38	0.14	0.14	0	0.28	0.8385	0.2214	0.8184	1.825	0	18	9	27	9468	8584	5006	5154	28212	0.31	0.31	0.18	0.2	0	0.38	0.8825	0.2645	0.7914	1.9133	0	3198	3467	1460	1423	9548	0.34	0.36	0.14	0.16	0	0.3	0.8483	0.2027	0.8295	1.8465	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2303	1991	1086	1309	1507	1193	1127	2094	903	1105	2584	2174	1520	1076	1317	1873	1144	1092	1194	1748	1438	809	805	1658	1739	923	1222	1898	1321	1322	1256	1419	865	2013	1931	1117	1135	706	1031	832	1375	619	3454	747	972	1261	618	1128	924	1509	988	762	1877	774	849	1482	710	626	791	653	2614	1340	846	931
GCF_000001215.4	NC_024512	NC_024512.1	Drosophila melanogaster chromosome Y.	1056780	1008635	682725	661579	257633	3667352	0.29	0.28	0.19	0.18	0.07	0.37	0.9339	0.039	0.9617	1.9267	30	21	51	309454	293381	193493	188743	78060	1063131	0.3	0.27	0.21	0.2	0.02	0.41	0.916	0.1191	0.8926	1.9558	0	17	5	22	21419	18305	11894	13863	65481	0.33	0.27	0.19	0.21	0.4	0.8966	0.2062	0.8219	1.9479	0	276629	264026	173172	167504	78060	959391	0.31	0.33	0.12	0.14	0.1	0.26	0.8271	0.2884	0.7482	1.6861	0	12	16	28	10316	10047	7696	6636	34695	0.3	0.29	0.22	0.19	0	0.41	0.9151	0.1	0.9068	1.9711	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	457	635	280	358	309	344	347	632	233	351	743	711	385	164	347	425	326	240	342	752	199	223	150	513	239	189	242	348	547	426	271	445	139	468	399	385	180	172	311	245	280	119	989	209	328	370	126	544	355	264	245	171	436	203	226	261	140	150	145	216	464	375	405	305
NA	NC_024511	NC_024511.2	Drosophila melanogaster mitochondrion; complete genome.	8151	7902	1991	1480	0	19524	0.42	0.4	0.1	0.08	0	0.18	0.8822	0.1627	0.8564	1.6723	23	14	37	5032	6449	1490	1769	0	14740	0.36	0.41	0.1	0.12	0	0.22	0.8333	0.3125	0.7487	1.7335	10	3	1	4	928	1225	386	353	2892	0.32	0.44	0.12	0.12	0.24	0.8599	0.2872	0.7583	1.7714	1	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	8	22	554	570	143	190	1457	0.38	0.39	0.1	0.13	0	0.23	0.8264	0.2981	0.7621	1.7447	0	2	2	861	868	136	245	2110	0.41	0.41	0.07	0.12	0	0.18	0.8147	0.3017	0.7614	1.6772	4	0	34	31	10	0	35	85	1	0	49	17	30	0	6	2	17	3	9	77	0	12	0	13	1	1	5	2	34	44	8	13	1	40	29	4	6	3	8	5	0	0	13	1	0	18	3	15	8	29	0	0	125	25	0	15	0	1	1	2	19	4	32	14