GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_003369915.1	NC_046673	NC_046673.1	Drosophila miranda strain MSH22 chromosome XL; D.miranda_PacBio2.1; whole genome shotgun sequence.	6900611	6926423	5760098	5755205	150	25342487	0.27	0.27	0.23	0.23	0.45	0.9528	0.0023	0.9977	1.994	1264	1269	2533	4122606	3932261	3582069	3454907	0	15091843	0.27	0.25	0.25	0.24	0.48	0.9183	0.1179	0.8936	1.9855	19846	1097	1105	2202	852255	671278	1032724	995416	3551673	0.25	0.21	0.27	0.27	0.55	0.8836	0.2495	0.7959	1.9571	22	1472597	1526532	1207613	1144452	0	5351194	0.25	0.31	0.24	0.19	0.43	0.8643	0.3488	0.7258	1.935	0	140	118	258	90566	81916	65148	64676	302306	0.31	0.27	0.21	0.21	0.42	0.8794	0.2489	0.7947	1.9471	15	59973	65366	46873	45900	218112	0.3	0.35	0.18	0.17	0.35	0.8412	0.3394	0.731	1.8743	15	18	33	479	583	639	771	2472	0.2	0.24	0.26	0.31	0	0.57	0.8969	0.2152	0.8138	1.9702	1	0	1	27	27	31	34	119	0.23	0.23	0.26	0.29	0	0.55	0.9153	0.0462	0.9559	1.993	25206	29608	6763	12362	26678	36699	20243	12574	19457	20586	16792	18616	15420	19614	12096	21202	12242	24636	18067	11001	37231	12069	19214	21981	39769	20750	9214	13204	9499	20352	23313	10076	16779	9740	19787	24067	20422	21361	14834	37755	31635	25300	14902	31471	22248	8793	13451	13298	9860	17005	20058	22804	4687	14117	15222	25935	2820	19290	22585	12016	21871	3433	9972	17699
GCF_003369915.1	NC_046674	NC_046674.1	Drosophila miranda strain MSH22 chromosome XR; D.miranda_PacBio2.1; whole genome shotgun sequence.	14350824	14325532	11765742	11836809	450	52279357	0.27	0.27	0.23	0.23	0.45	0.9564	0.0039	0.9961	1.9932	1839	1821	3660	7125733	6888142	6062270	5913101	50	25989296	0.27	0.25	0.25	0.24	0.48	0.9188	0.1234	0.8895	1.9843	23458	1651	1585	3236	1294046	1015829	1481298	1430637	5221810	0.26	0.21	0.27	0.27	0.53	0.8821	0.259	0.7897	1.9563	0	3195770	3324725	2579986	2513408	50	11613939	0.27	0.32	0.22	0.19	0.42	0.8614	0.3181	0.7463	1.9307	0	147	167	314	113175	99451	78120	78768	369514	0.3	0.27	0.21	0.21	0.43	0.8827	0.2476	0.794	1.9455	0	179112	186011	147993	148701	661817	0.3	0.35	0.18	0.17	0.35	0.8344	0.3297	0.7384	1.8773	14	31	45	616	790	888	1086	3380	0.18	0.23	0.26	0.32	0	0.58	0.875	0.2498	0.7874	1.9607	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	36705	46362	10054	19184	37690	51808	29069	20695	29249	30434	24922	29305	22096	28151	18850	33290	18351	36506	27804	17547	54629	16360	28030	31122	55903	29108	14386	21774	15252	30622	33896	15672	24643	15602	29346	33855	30197	30986	23614	51889	44849	33990	25672	41786	31664	14197	17818	22916	15041	24378	28320	31238	7941	20695	25290	37704	4952	25155	30760	16763	33645	6718	15910	24889
GCF_003369915.1	NC_046675	NC_046675.1	Drosophila miranda strain MSH22 chromosome 2; D.miranda_PacBio2.1; whole genome shotgun sequence.	9770219	9785034	7869938	7838192	0	35263383	0.28	0.28	0.22	0.22	0.45	0.9578	0.0028	0.9972	1.9914	1974	2148	4122	6525285	6287841	5379665	5248713	0	23441504	0.27	0.25	0.24	0.24	0.48	0.9198	0.1131	0.8977	1.9857	67031	1790	1831	3621	1431572	1154504	1568256	1545376	5699708	0.26	0.22	0.26	0.26	0.52	0.8836	0.2475	0.7967	1.9613	85	2568059	2685229	1996803	1926727	0	9176818	0.27	0.32	0.21	0.19	0.4	0.8586	0.312	0.75	1.9262	3054	116	126	242	92054	85068	64105	62387	303614	0.3	0.28	0.21	0.21	0.42	0.8773	0.2504	0.7935	1.9413	0	86224	89042	63643	63476	302385	0.31	0.34	0.18	0.17	0.35	0.837	0.3282	0.741	1.8735	41	27	68	992	1157	1271	1631	5051	0.2	0.23	0.25	0.32	0	0.57	0.8831	0.2229	0.8089	1.9676	0	128	128	3330	3458	3968	4476	15232	0.22	0.23	0.26	0.29	0	0.55	0.9151	0.079	0.9248	1.9899	42529	50293	11908	20780	41152	54907	31599	24649	30128	34350	30422	33963	25094	29794	21145	35480	21005	39657	30828	22312	57460	18873	29273	36219	55635	30129	15623	26100	18181	33302	37760	17880	26350	18864	32631	35889	31086	31676	24875	53933	45550	35413	30867	44488	36060	16688	19058	24704	18461	27642	29734	32738	9936	21981	25328	39988	5184	26638	31081	18536	37423	7936	18822	27603
GCF_003369915.1	NC_046676	NC_046676.1	Drosophila miranda strain MSH22 chromosome 3; D.miranda_PacBio2.1; whole genome shotgun sequence.	6818656	6862550	5804110	5820875	0	25306191	0.27	0.27	0.23	0.23	0.46	0.9522	0.0047	0.9954	1.9952	1582	1591	3173	4526579	4342929	3993026	3880178	0	16742712	0.27	0.25	0.24	0.24	0.48	0.9202	0.1136	0.8971	1.9864	34259	1440	1369	2809	1108751	895820	1243123	1215434	4463128	0.25	0.22	0.26	0.27	0.53	0.8832	0.2529	0.7917	1.9599	385	1681150	1766823	1416912	1359834	0	6224719	0.27	0.32	0.22	0.19	0.42	0.8595	0.3161	0.7466	1.9327	30882	78	123	201	58977	53804	41900	42245	196926	0.3	0.27	0.21	0.22	0.43	0.8805	0.243	0.7988	1.9475	0	68236	69183	50691	52843	240953	0.3	0.35	0.18	0.17	0.35	0.8383	0.318	0.7464	1.878	49	50	99	1342	1623	1946	2395	7306	0.19	0.22	0.27	0.33	0	0.59	0.8914	0.2301	0.8018	1.958	1	0	1	26	26	32	35	119	0.22	0.22	0.27	0.29	0	0.56	0.9153	0.0448	0.9571	1.9877	31827	38749	9047	16483	31037	43724	24804	18647	24432	27434	21399	26522	19086	23716	16329	28598	16373	30744	25588	16415	46549	14274	24329	27264	43917	24777	12848	19743	13520	26246	29244	14588	20897	14008	24448	29787	24637	24805	20403	41898	36329	28986	22816	34531	28003	13113	15175	19837	13799	20675	23424	25399	7113	17442	20209	30540	4404	22097	24414	14480	29051	6207	14567	22614
GCF_003369915.1	NC_046677	NC_046677.1	Drosophila miranda strain MSH22 chromosome 4; D.miranda_PacBio2.1; whole genome shotgun sequence.	9198899	9173567	7077714	7089611	50	32539841	0.28	0.28	0.22	0.22	0.44	0.9515	0.0022	0.9978	1.9879	1698	1642	3340	6121256	5951626	4828405	4746025	50	21647362	0.28	0.26	0.23	0.23	0.46	0.9187	0.1146	0.8966	1.9812	90944	1461	1390	2851	1139139	932826	1215091	1201087	4488143	0.26	0.22	0.25	0.26	0.51	0.8843	0.251	0.7944	1.96	4	2352452	2445014	1732360	1687488	50	8217364	0.28	0.33	0.2	0.18	0.39	0.8573	0.3027	0.7569	1.9169	0	182	167	349	119468	107862	80634	81364	389328	0.32	0.27	0.21	0.2	0.41	0.8705	0.2688	0.782	1.9323	151	289402	301957	219558	220728	1031645	0.3	0.37	0.16	0.16	0.32	0.835	0.3304	0.741	1.8481	23	24	47	588	772	931	1112	3403	0.17	0.23	0.27	0.33	0	0.6	0.888	0.2369	0.7949	1.9495	0	15	15	393	405	462	525	1785	0.22	0.23	0.26	0.29	0	0.55	0.9174	0.079	0.9252	1.9901	33681	38317	9762	17099	30353	43444	24044	20531	23869	27510	25186	28703	20254	22880	16910	27335	17178	31418	24709	18754	44214	14910	23225	30013	42541	23871	12842	21482	15399	26410	29859	14621	21047	16111	25860	27963	23928	25072	20771	40043	33870	26062	26170	32899	28154	13660	15182	19487	15101	21634	23031	24242	8532	17737	20072	30936	4300	20051	23596	14696	29427	6484	14523	21097
GCF_003369915.1	NC_046678	NC_046678.1	Drosophila miranda strain MSH22 chromosome 5; D.miranda_PacBio2.1; whole genome shotgun sequence.	691011	689247	479193	506565	0	2366016	0.29	0.29	0.2	0.21	0.42	0.9268	0.029	0.9717	1.9796	66	61	127	409805	401275	258065	261876	0	1331021	0.31	0.3	0.19	0.2	0.39	0.9207	0.0923	0.9167	1.9534	0	49	43	92	95050	75603	67173	68213	306039	0.31	0.25	0.21	0.22	0.43	0.8842	0.2565	0.7872	1.9553	0	180937	194212	112806	115062	0	603017	0.33	0.37	0.15	0.15	0.3	0.8473	0.2437	0.799	1.8519	0	17	13	30	12324	11968	7573	7927	39792	0.3	0.3	0.19	0.21	0.4	0.8781	0.2515	0.7945	1.9305	0	11276	11839	6266	6582	35963	0.31	0.37	0.16	0.16	0.32	0.8445	0.2608	0.7876	1.8674	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2644	2225	1218	1678	2055	1589	1605	2247	1114	1630	2819	2421	2020	1436	1695	2092	1329	1421	1421	1944	1752	1027	1032	1981	2304	1219	1305	2074	1670	1607	1579	1393	1082	2185	2363	1402	1340	879	1269	1166	1974	955	3485	1128	1401	1424	761	1668	1125	1729	1274	1167	1805	935	1189	1926	730	908	1160	909	2936	1349	1349	1290