GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_023558535.1	NC_083455	NC_083455.1	Drosophila nasuta strain 15112-1781.00 chromosome 2L; ASM2355853v1; whole genome shotgun sequence.	8922357	8929840	5415300	5422603	50	28690150	0.31	0.31	0.19	0.19	0.38	0.9499	0.0011	0.9989	1.9564	1431	1440	2871	6291642	6182946	3950194	3940095	0	20364877	0.3	0.28	0.2	0.21	0.41	0.9128	0.1138	0.8968	1.9634	64112	1235	1228	2463	1039401	886170	942130	966239	3833940	0.28	0.24	0.23	0.25	0.48	0.8838	0.2448	0.7983	1.9624	1	2416072	2500729	1374521	1346997	7638319	0.32	0.37	0.16	0.15	0.31	0.8409	0.2849	0.7699	1.8565	530	106	86	192	54364	45864	31080	33409	164717	0.33	0.29	0.18	0.2	0.38	0.8673	0.2601	0.786	1.9177	261815	273705	160354	166706	862580	0.32	0.37	0.15	0.16	0.31	0.8444	0.2877	0.7729	1.8502	20	30	50	646	831	966	1181	3624	0.18	0.23	0.26	0.32	0	0.59	0.8904	0.2604	0.7766	1.9541	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30951	31231	8283	15907	31717	30961	24360	24462	13859	23101	29368	26906	20101	18162	16155	24849	13964	26411	18583	20588	30984	13426	17291	29705	32536	14176	11667	28089	17443	18533	24173	14895	16848	15269	26834	18524	18968	13156	14623	25116	28048	22149	27400	24485	24849	15896	7365	14802	15470	21968	19554	21297	12245	11756	12764	23642	4099	11205	14984	15686	34785	7419	13725	17584
GCF_023558535.1	NC_083456	NC_083456.1	Drosophila nasuta strain 15112-1781.00 chromosome 2R; ASM2355853v1; whole genome shotgun sequence.	10347875	10359561	6582614	6595395	200	33885645	0.31	0.31	0.19	0.19	0.39	0.9517	0.0015	0.9985	1.9641	1846	1830	3676	7438911	7246357	4875433	4835436	50	24396187	0.3	0.28	0.21	0.21	0.42	0.9149	0.1095	0.9004	1.9677	25174	1611	1567	3178	1340926	1135873	1212168	1237185	4926152	0.28	0.24	0.23	0.25	0.48	0.8836	0.2399	0.8011	1.9644	41	2576612	2682978	1544504	1507295	8311389	0.32	0.37	0.16	0.16	0.32	0.8388	0.2932	0.7639	1.86	0	89	89	178	58534	50349	33846	34769	177498	0.33	0.29	0.18	0.19	0.38	0.8698	0.2532	0.7898	1.9172	174315	182086	110410	110838	577649	0.33	0.38	0.14	0.15	0.3	0.8253	0.3068	0.7588	1.8238	35	30	65	926	1099	1215	1583	4823	0.19	0.23	0.25	0.33	0	0.58	0.881	0.2378	0.7972	1.9623	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	39924	40252	10918	20204	41292	39165	31137	31541	18475	28443	36829	33668	25906	23230	20447	32801	17961	33474	24616	26704	39940	17530	21525	37084	41768	18838	15344	35721	22850	23752	30516	18563	21134	19746	34771	23743	24471	16876	19217	32067	36633	28015	34996	32546	31273	20725	9248	19905	19376	28103	25104	27313	15518	14366	16553	31199	5391	14133	19110	19790	44833	10468	18547	22634
GCF_023558535.1	NC_083457	NC_083457.1	Drosophila nasuta strain 15112-1781.00 chromosome 3; ASM2355853v1; whole genome shotgun sequence.	17073094	17061402	10583885	10565367	100	55283848	0.31	0.31	0.19	0.19	0.38	0.9505	0.0012	0.9988	1.9598	3196	2949	6145	11838814	11484250	7624284	7538239	0	38485587	0.3	0.28	0.21	0.21	0.42	0.9134	0.1136	0.8971	1.9673	138735	2681	2505	5186	2120994	1795416	1960448	1991818	7868676	0.27	0.24	0.24	0.25	0.48	0.882	0.248	0.7962	1.9632	1201	4342260	4485771	2504968	2434504	13767503	0.31	0.37	0.16	0.16	0.32	0.8415	0.2948	0.7624	1.8634	933	150	142	292	76578	65772	42608	44260	229218	0.33	0.3	0.18	0.19	0.37	0.8668	0.2538	0.7911	1.9098	230084	242323	139585	140451	752443	0.33	0.37	0.15	0.15	0.3	0.8301	0.2923	0.7661	1.8337	78	90	168	2322	2824	3315	3990	12451	0.19	0.23	0.27	0.32	0	0.59	0.887	0.215	0.8137	1.9629	71	4	75	2024	1878	2399	2622	8923	0.23	0.21	0.27	0.29	0	0.56	0.9043	0.0819	0.9214	1.9874	61417	64341	16270	31872	64993	63334	50629	49345	29858	46948	58134	54411	39832	37054	32282	52933	28855	54103	39858	40410	66024	28974	35395	59361	68108	31197	23579	56503	35438	38505	49490	28952	34764	29692	53691	38509	39855	28027	31206	52857	60091	46357	53722	52612	51006	32544	14211	31495	30765	44200	40216	43381	23077	22870	26869	50057	7768	22995	31167	31812	72232	14910	29055	36821
GCF_023558535.1	NC_083458	NC_083458.1	Drosophila nasuta strain 15112-1781.00 chromosome 4; ASM2355853v1; whole genome shotgun sequence.	669845	668443	359194	364336	0	2061818	0.32	0.32	0.17	0.18	0.35	0.9402	0.0082	0.9919	1.9349	59	61	120	475935	465693	249532	250231	0	1441391	0.33	0.32	0.17	0.18	0.35	0.9161	0.0721	0.9329	1.9303	6	32	49	81	68361	53762	43528	43665	209316	0.33	0.26	0.2	0.21	0.41	0.8793	0.2708	0.7762	1.94	0	186739	193605	92860	92434	565638	0.34	0.38	0.14	0.14	0.28	0.8498	0.2047	0.8303	1.8223	0	16	8	24	14443	13950	8971	8980	46344	0.32	0.29	0.19	0.21	0.39	0.8801	0.2459	0.7965	1.9318	24059	24704	13733	13891	76387	0.33	0.38	0.14	0.15	0.29	0.8232	0.3454	0.7302	1.8097	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2064	1551	825	1065	1433	996	986	1977	648	934	2550	1669	1589	808	1052	1591	862	1018	810	1242	1091	674	633	1608	1389	659	896	1678	1138	905	1257	938	734	1775	1657	837	894	421	786	627	1203	611	2570	678	897	1008	390	940	768	1385	943	696	1492	557	690	1354	411	548	624	614	2432	898	754	896
GCF_023558535.1	NC_083459	NC_083459.1	Drosophila nasuta strain 15112-1781.00 chromosome X; ASM2355853v1; whole genome shotgun sequence.	10338804	10327029	6145639	6149520	100	32961092	0.31	0.31	0.19	0.19	0.37	0.946	0.0009	0.9991	1.953	1097	1118	2215	7315109	7205283	4562932	4497299	50	23580673	0.3	0.28	0.21	0.21	0.43	0.9122	0.1175	0.8948	1.9681	21500	956	976	1932	865255	696383	899996	902069	3363703	0.26	0.22	0.25	0.26	0.51	0.881	0.2517	0.7941	1.9642	0	2666705	2788192	1508693	1454730	8418320	0.3	0.36	0.18	0.16	0.34	0.8525	0.3072	0.7559	1.8795	0	55	51	106	31528	26410	17730	18850	94518	0.34	0.28	0.18	0.19	0.37	0.8566	0.3115	0.7509	1.9017	346654	365656	197442	210270	1120022	0.32	0.36	0.15	0.16	0.32	0.8515	0.2548	0.7956	1.8586	11	17	28	376	466	547	694	2083	0.18	0.22	0.26	0.33	0	0.59	0.8874	0.2412	0.7937	1.9534	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	25439	25109	4869	10404	32228	29542	21256	16934	12376	18228	21987	19523	16706	18948	12681	24360	10141	23974	14834	13447	30017	12140	16303	25258	34671	13239	7646	23009	12425	15357	22299	9137	15959	9760	25349	17076	17783	12222	10812	25829	31864	24961	16882	26770	22679	11887	6729	10332	12003	19593	20899	24874	6244	8355	10778	21159	2200	12701	17246	15623	33202	3963	10747	18174