GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_009870125.1	NC_046679	NC_046679.1	Drosophila pseudoobscura strain MV2-25 chromosome 2; UCI_Dpse_MV25; whole genome shotgun sequence.	8970394	8944822	7254274	7253076	0	32422566	0.28	0.28	0.22	0.22	0.45	0.9582	0.0015	0.9985	1.992	1997	1999	3996	6222569	5985403	5203179	5064807	22475958	0.28	0.25	0.24	0.24	0.47	0.9196	0.1153	0.8959	1.9856	37884	1767	1760	3527	1401131	1130221	1546426	1521039	5598817	0.26	0.22	0.26	0.27	0.53	0.8841	0.2469	0.7969	1.9617	422	2426573	2540049	1919481	1842835	8728938	0.27	0.32	0.21	0.19	0	0.4	0.8583	0.3114	0.7505	1.927	0	172	174	346	93171	83836	67127	66294	310428	0.3	0.27	0.21	0.21	0	0.43	0.88	0.2451	0.7976	1.9476	0	124595	127860	91190	92007	435652	0.31	0.34	0.18	0.17	0	0.35	0.8402	0.3317	0.7378	1.8807	39	32	71	1035	1197	1330	1705	5267	0.2	0.23	0.25	0.32	0	0.58	0.8816	0.2177	0.8131	1.9672	9	0	9	234	243	279	315	1071	0.22	0.23	0.26	0.29	0	0.55	0.9153	0.0795	0.9243	1.9898	41537	49492	11516	20377	40272	53989	31029	24038	29805	33821	29454	32845	24425	29389	20788	34885	20574	39183	30380	21554	57071	18490	28923	35363	54797	29828	15318	25320	17640	33059	37174	17573	25847	18290	31794	35638	30712	31570	24735	53363	44913	34939	29982	43840	35490	16236	18813	24162	18136	27070	29088	32202	9432	21757	25014	39292	4968	26578	30653	18220	36331	7627	18288	27193
GCF_009870125.1	NC_046680	NC_046680.1	Drosophila pseudoobscura strain MV2-25 chromosome 3; UCI_Dpse_MV25; whole genome shotgun sequence.	6343178	6303411	5413694	5449759	0	23510042	0.27	0.27	0.23	0.23	0.46	0.9556	0.0065	0.9936	1.9958	1607	1516	3123	4421426	4261653	3919822	3808262	16411163	0.27	0.25	0.24	0.24	0.48	0.9204	0.111	0.8992	1.9864	33732	1436	1275	2711	1059256	861021	1194981	1161945	4277203	0.25	0.22	0.26	0.27	0.53	0.8826	0.2519	0.7927	1.9611	19	1560700	1646055	1319627	1266294	5792676	0.27	0.32	0.22	0.19	0	0.42	0.8597	0.3157	0.7468	1.9326	0	134	152	286	83040	76982	61472	62435	283929	0.3	0.27	0.22	0.22	0	0.44	0.8815	0.2355	0.8038	1.9507	0	57949	63180	48864	48206	218199	0.29	0.35	0.18	0.18	0	0.37	0.8464	0.3062	0.7545	1.9007	42	55	97	1318	1590	1905	2346	7159	0.19	0.22	0.26	0.33	0	0.59	0.8911	0.2293	0.8023	1.9583	0	1	1	26	26	32	35	119	0.22	0.22	0.27	0.29	0	0.56	0.9153	0.0448	0.9571	1.9877	30295	36498	8898	15968	29761	41316	23727	17893	23612	26276	20556	24987	18259	22757	15753	27590	15802	29919	24798	15805	44472	13710	23189	25887	41752	23900	12357	18832	13050	25258	28187	14220	20013	13535	23863	28529	23894	24245	19911	40135	34809	27505	21539	33114	26924	12567	14659	18701	13195	19877	22291	24501	6908	17001	19206	29356	4082	21165	23401	13847	27536	5821	13724	21402
GCF_009870125.1	NC_046681	NC_046681.1	Drosophila pseudoobscura strain MV2-25 chromosome 4; UCI_Dpse_MV25; whole genome shotgun sequence.	8616244	8629763	6731095	6729765	0	30706867	0.28	0.28	0.22	0.22	0.44	0.9554	0.0009	0.9991	1.989	1647	1594	3241	5996643	5844841	4790200	4723290	21354974	0.28	0.26	0.23	0.23	0.46	0.9188	0.114	0.8973	1.9819	40807	1421	1344	2765	1134434	929062	1217083	1201815	4482394	0.26	0.22	0.25	0.26	0.52	0.8848	0.2474	0.7965	1.9609	26	2246703	2333412	1687295	1649092	7916502	0.28	0.33	0.21	0.18	0	0.39	0.8575	0.3023	0.7573	1.9178	0	217	189	406	115670	106213	82415	82793	387091	0.3	0.28	0.21	0.21	0	0.42	0.8742	0.2696	0.7822	1.9389	109	362357	376091	284984	287918	1311350	0.3	0.36	0.18	0.17	0	0.35	0.8424	0.3423	0.7339	1.8715	22	26	48	598	786	954	1136	3474	0.17	0.23	0.27	0.33	0	0.6	0.8872	0.2361	0.7958	1.9488	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	33421	37709	9698	16968	30465	43120	24112	20377	23967	27720	24933	28379	20427	23146	17165	27151	17139	31414	24432	18370	44143	14684	23402	29547	42424	23832	12938	21335	15275	26342	29940	14616	21110	16025	25555	27765	23937	25076	20452	40140	34195	26096	25716	32902	27973	13560	15233	19620	14946	21652	23111	24656	8552	17967	20457	31036	4229	20502	23549	14639	29592	6400	14613	21315
GCF_009870125.1	NC_046682	NC_046682.1	Drosophila pseudoobscura strain MV2-25 chromosome 5; UCI_Dpse_MV25; whole genome shotgun sequence.	561941	559663	381441	378025	0	1881070	0.3	0.3	0.2	0.2	0.4	0.9434	0.0065	0.9935	1.9731	72	56	128	382666	368423	240979	242580	1234648	0.32	0.3	0.19	0.19	0.38	0.9186	0.0861	0.92	1.9499	0	49	43	92	92111	73496	64779	65825	296211	0.31	0.26	0.21	0.22	0.43	0.8841	0.2536	0.7882	1.9551	0	187192	195705	121206	121993	626096	0.33	0.37	0.15	0.15	0	0.3	0.8475	0.2412	0.8011	1.8517	0	24	12	36	16442	15370	9756	9894	51462	0.33	0.29	0.19	0.19	0	0.38	0.8884	0.195	0.8328	1.9323	0	8185	8292	4686	4625	25788	0.32	0.37	0.15	0.16	0	0.31	0.8417	0.3233	0.7486	1.8393	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2621	2188	1174	1613	1972	1526	1506	2213	1040	1594	2713	2309	1932	1385	1583	2005	1260	1385	1378	1935	1658	967	1022	1868	2218	1176	1279	2015	1627	1518	1564	1362	1051	2122	2278	1334	1290	840	1216	1131	1926	948	3403	1092	1396	1398	727	1627	1074	1654	1234	1119	1770	902	1141	1857	739	863	1112	882	2827	1366	1351	1259
GCF_009870125.1	NC_046683	NC_046683.1	Drosophila pseudoobscura strain MV2-25 chromosome X; UCI_Dpse_MV25; whole genome shotgun sequence.	18554674	18552507	15522793	15520664	8000	68158638	0.27	0.27	0.23	0.23	0.46	0.9539	0.0001	0.9999	1.9942	3026	3014	6040	11091943	10717921	9602759	9314237	40726860	0.27	0.25	0.25	0.24	0.48	0.9186	0.1229	0.8898	1.9839	93131	2507	2514	5021	2036652	1602232	2405347	2318229	8362460	0.25	0.21	0.27	0.27	0.54	0.8824	0.2562	0.7913	1.9561	0	4311209	4503667	3559554	3413769	15788199	0.26	0.31	0.23	0.19	0	0.42	0.8633	0.3291	0.7389	1.9332	1153	424	337	761	234528	213837	168879	169158	786402	0.3	0.27	0.21	0.21	0	0.42	0.8797	0.2618	0.7858	1.9431	27	425923	454807	348850	351846	1581426	0.3	0.35	0.18	0.18	0	0.35	0.84	0.351	0.7254	1.8712	49	31	80	1127	1406	1566	1917	6016	0.19	0.23	0.26	0.32	0	0.58	0.8844	0.2326	0.8003	1.9651	27	69	96	12891	12974	9037	11185	46087	0.23	0.24	0.24	0.28	0	0.52	0.9129	0.0995	0.9071	1.9875	58012	72151	16004	29967	62010	84308	46865	31022	46784	48783	39155	44500	35831	46151	29478	51924	29013	58691	43837	26633	87961	27100	45252	49268	90176	47802	22482	33009	23156	48625	54724	24388	39492	23776	47171	55267	48104	50328	36605	85573	73571	56653	37692	70062	51876	21722	30117	34998	23911	39485	46543	51815	11755	33456	38927	60716	7281	43127	51500	27643	52240	9487	25169	41135
NA	NC_046603	NC_046603.1	Drosophila pseudoobscura strain MV2-25 mitochondrion; complete sequence; whole genome shotgun sequence.	6415	6232	1971	1500	0	16118	0.4	0.39	0.12	0.09	0.22	0.8847	0.1502	0.8663	1.7486	23	14	37	4968	6388	1540	1834	14730	0.36	0.41	0.1	0.13	0.23	0.8376	0.2837	0.7694	1.7508	10	3	2	5	1333	1859	501	540	4233	0.31	0.45	0.12	0.12	0.24	0.8566	0.3044	0.7448	1.7629	1	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	8	22	545	564	145	203	1457	0.37	0.39	0.1	0.14	0	0.24	0.8291	0.2676	0.7853	1.7594	0	2	2	845	856	143	248	2092	0.4	0.4	0.07	0.12	0	0.19	0.818	0.2852	0.7712	1.6935	7	4	47	36	19	1	42	113	2	2	70	25	32	1	14	5	38	1	14	110	1	29	0	19	0	2	10	14	58	50	5	13	0	64	34	2	9	3	9	7	1	0	19	1	1	36	6	28	16	32	2	0	207	32	0	19	0	1	1	6	27	5	43	16