GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_016746245.2	NC_053016	NC_053016.2	Drosophila santomea strain STO CAGO 1482 chromosome 2L; Prin_Dsan_1.1; whole genome shotgun sequence.	8015423	8014986	5935711	5948764	396	27915280	0.29	0.29	0.21	0.21	0.43	0.9586	0.0011	0.9989	1.984	1485	1446	2931	4829613	4673428	3733414	3651362	197	16888014	0.28	0.26	0.23	0.23	0.46	0.9198	0.1128	0.8979	1.9828	18697	1377	1303	2680	1108204	914706	1171168	1150783	4344861	0.26	0.22	0.26	0.26	0.52	0.8849	0.2443	0.7981	1.9626	42	2119415	2195648	1481660	1441921	97	7238741	0.3	0.34	0.19	0.17	0.36	0.8542	0.2635	0.7836	1.9004	62	59	121	29107	25515	19347	19618	93587	0.31	0.28	0.2	0.21	0.41	0.8753	0.2374	0.8005	1.9416	34757	35312	22209	22269	114547	0.31	0.35	0.17	0.17	0.34	0.8435	0.28	0.7736	1.8779	30	39	69	884	1155	1326	1679	5044	0.18	0.23	0.26	0.33	0	0.59	0.8916	0.2714	0.7676	1.9513	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30297	37557	9834	18357	28528	40362	23172	20068	25630	27371	22847	28176	19202	21598	18507	29415	15401	30906	26225	18802	40788	15784	20919	28337	39560	25679	13475	21347	13876	28960	29229	16841	19206	14014	22756	26841	24784	21962	20230	36165	30785	24703	25488	29417	26653	15431	12393	18628	13476	19398	21411	23219	9895	17806	20245	30758	4582	20079	23360	13030	29354	7398	13909	20780
GCF_016746245.2	NC_053017	NC_053017.2	Drosophila santomea strain STO CAGO 1482 chromosome 2R; Prin_Dsan_1.1; whole genome shotgun sequence.	6403954	6438559	4904435	4899165	200	22646313	0.28	0.28	0.22	0.22	0.43	0.9571	0.0032	0.9968	1.987	1446	1462	2908	4202150	4048853	3336440	3261381	0	14848824	0.28	0.26	0.24	0.23	0.47	0.9192	0.1101	0.9003	1.9842	21517	1270	1301	2571	1017437	830213	1067439	1058275	3973364	0.26	0.22	0.26	0.26	0.52	0.8844	0.2506	0.7939	1.9619	2	1577095	1651351	1155890	1110800	0	5495136	0.3	0.34	0.19	0.17	0.37	0.8529	0.2762	0.7747	1.9043	69	83	152	33534	30175	22916	23482	110107	0.31	0.29	0.2	0.21	0.41	0.8741	0.253	0.7902	1.9381	68205	72784	47220	47464	235673	0.31	0.37	0.16	0.16	0.33	0.8393	0.3125	0.7538	1.8578	34	36	70	935	1150	1413	1669	5167	0.18	0.22	0.27	0.32	0	0.6	0.8841	0.2116	0.8155	1.9574	65	65	1694	1625	2145	2261	7725	0.22	0.21	0.28	0.29	0	0.57	0.9042	0.0471	0.9541	1.9852	28164	36097	8830	16217	25671	37993	21301	18134	23745	24668	21019	26204	16937	19474	16831	26765	13677	28133	23862	16810	39415	14499	19145	26560	36827	23543	12181	19800	12251	26044	26710	14940	17061	12715	20040	24257	22094	20288	18260	34038	29000	22804	24025	26992	24023	13824	11144	17253	12052	17584	19433	21030	8795	15528	19158	27300	4145	18275	20922	11737	26818	6822	12614	19173
GCF_016746245.2	NC_053018	NC_053018.2	Drosophila santomea strain STO CAGO 1482 chromosome 3L; Prin_Dsan_1.1; whole genome shotgun sequence.	7364548	7390954	5433215	5432853	298	25621868	0.29	0.29	0.21	0.21	0.42	0.9575	0.0018	0.9982	1.9833	1495	1474	2969	4989849	4794633	3818241	3734129	0	17336852	0.28	0.26	0.23	0.23	0.46	0.9188	0.1179	0.894	1.9822	48670	1375	1343	2718	1113157	897243	1167070	1148820	4326290	0.26	0.22	0.26	0.26	0.52	0.8832	0.2564	0.7904	1.9591	1	2051510	2117564	1421876	1375530	0	6966480	0.3	0.34	0.18	0.17	0.35	0.8549	0.27	0.7793	1.8964	68	74	142	35119	31240	24620	24982	115961	0.31	0.28	0.2	0.21	0.41	0.878	0.2434	0.7978	1.941	53993	57649	36385	36666	184693	0.31	0.35	0.17	0.17	0.34	0.839	0.2802	0.7737	1.879	23	23	46	637	796	894	1096	3423	0.19	0.23	0.26	0.32	0	0.58	0.8793	0.2435	0.7908	1.9633	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30371	39574	9334	17920	28676	39970	23859	19616	26206	26152	22594	28012	18779	20701	18694	29227	14743	31077	25064	17589	41393	16048	21261	28790	41362	25996	13354	21696	13590	29874	28869	15707	18159	13501	21360	25478	24681	22411	19991	37263	32292	23852	26259	29060	25361	14758	11658	19203	13047	19165	21144	23041	9524	17090	21342	31364	4885	19171	23264	12618	30051	7432	14034	20658
GCF_016746245.2	NC_053019	NC_053019.2	Drosophila santomea strain STO CAGO 1482 chromosome 3R; Prin_Dsan_1.1; whole genome shotgun sequence.	8222736	8247017	6281075	6287276	0	29038104	0.28	0.28	0.22	0.22	0.43	0.9584	0.002	0.998	1.9869	1804	1832	3636	5834610	5627985	4595843	4486098	0	20544536	0.28	0.26	0.23	0.23	0.47	0.9207	0.1103	0.9001	1.9855	44697	1686	1670	3356	1348809	1096397	1446191	1427333	5318730	0.26	0.22	0.26	0.27	0.53	0.8848	0.2473	0.7963	1.9631	1068	2273863	2375128	1628003	1571146	0	7848140	0.3	0.34	0.19	0.17	0.36	0.8547	0.2687	0.78	1.9021	69	69	138	36104	33410	25604	26336	121454	0.3	0.28	0.21	0.22	0.42	0.8786	0.2423	0.7976	1.9488	78572	81550	58097	57128	275347	0.3	0.36	0.17	0.17	0.34	0.8476	0.3323	0.7404	1.862	32	45	77	1131	1303	1435	1851	5720	0.2	0.23	0.25	0.32	0	0.57	0.8849	0.2236	0.8088	1.9681	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	38208	47498	11310	21845	35809	50828	28798	23245	31576	32796	27393	33661	22852	26413	22382	35614	18375	38386	31330	21622	52214	19631	26067	34913	49731	31650	15925	25476	15622	35942	35293	19338	22862	16016	27471	32769	30047	27610	24410	46333	39902	31071	29935	37288	32507	17831	14895	22584	16099	23636	26821	29225	10931	21111	25375	38037	5607	25068	29231	15557	35688	8718	17064	25428
GCF_016746245.2	NC_053020	NC_053020.2	Drosophila santomea strain STO CAGO 1482 chromosome 4; Prin_Dsan_1.1; whole genome shotgun sequence.	455849	464521	253246	255710	0	1429326	0.32	0.32	0.18	0.18	0.36	0.9426	0.0143	0.9858	1.9393	44	50	94	353964	343820	191629	191361	0	1080774	0.33	0.32	0.18	0.18	0.36	0.9169	0.0688	0.9356	1.9329	0	35	48	83	83414	66016	53358	53090	255878	0.33	0.26	0.2	0.21	0.41	0.8836	0.2537	0.7889	1.9458	0	172440	177517	88270	88359	0	526586	0.35	0.37	0.14	0.14	0.28	0.8382	0.2229	0.8187	1.8251	9	3	12	4109	3963	2298	2505	12875	0.32	0.3	0.18	0.2	0.38	0.8726	0.2228	0.811	1.9293	4374	4683	2276	2191	13524	0.3	0.4	0.15	0.15	0.3	0.8255	0.3628	0.7293	1.8202	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2305	2000	1180	1382	1500	1219	1144	2168	898	1160	2651	2224	1581	1054	1351	1893	1183	1100	1178	1809	1437	851	828	1670	1752	950	1276	1896	1368	1339	1279	1401	881	2090	1980	1118	1165	680	1036	827	1382	664	3592	772	999	1246	593	1112	889	1512	962	781	1937	791	906	1520	728	606	809	683	2680	1359	869	929
GCF_016746245.2	NC_053021	NC_053021.2	Drosophila santomea strain STO CAGO 1482 chromosome X; Prin_Dsan_1.1; whole genome shotgun sequence.	6401535	6439231	4883938	4906052	500	22631256	0.28	0.28	0.22	0.22	0.43	0.9565	0.0052	0.9948	1.9868	1122	1129	2251	4707783	4542145	3740978	3646675	0	16637581	0.27	0.25	0.24	0.24	0.48	0.9192	0.1111	0.8995	1.9854	14495	1053	1031	2084	895100	707956	1066540	1050405	3720001	0.24	0.2	0.28	0.28	0.55	0.882	0.2488	0.7958	1.9571	22	1671043	1738511	1193348	1133141	0	5736043	0.29	0.33	0.2	0.18	0.38	0.8644	0.2782	0.7732	1.9193	41	60	101	35303	29654	24519	24420	113896	0.31	0.26	0.21	0.22	0.43	0.8707	0.2876	0.7668	1.9399	187184	192316	131430	136491	647421	0.31	0.34	0.18	0.17	0.35	0.8606	0.2478	0.7985	1.8954	9	17	26	380	467	491	644	1982	0.19	0.24	0.25	0.32	0	0.57	0.899	0.2592	0.7765	1.9666	9	9	3683	3712	2322	2943	12660	0.28	0.29	0.19	0.24	0	0.43	0.904	0.1534	0.8607	1.9803	25257	31284	6572	13077	28084	38027	20243	13366	22385	22998	17432	20554	15179	20682	14767	23852	11514	28275	19680	11215	39628	14247	17991	24143	39450	22833	9586	15412	9018	23452	25915	10646	16373	8927	18642	23148	22524	18945	15265	36579	31671	27149	14964	31633	23565	10583	10704	13819	10037	16938	20752	25844	5165	13651	17968	28406	2932	20839	24567	12079	23964	4082	10565	18673