GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_004382195.1	NC_045949	NC_045949.1	Drosophila sechellia strain sech25 chromosome 2L; ASM438219v1; whole genome shotgun sequence.	7239289	7187749	5267465	5262073	400	24956976	0.29	0.29	0.21	0.21	0.42	0.9587	0.0041	0.9959	1.9823	1406	1366	2772	4514256	4362577	3390732	3339444	0	15607009	0.28	0.26	0.23	0.23	0.45	0.9194	0.1138	0.8971	1.9807	30312	1284	1218	2502	1048141	860523	1073551	1067102	4049317	0.26	0.22	0.26	0.26	0.52	0.8861	0.2428	0.7997	1.9639	4	1870741	1941523	1279922	1248779	0	6340965	0.31	0.34	0.18	0.17	0.35	0.8527	0.2632	0.7842	1.8935	80	78	158	42906	39187	27925	28729	138747	0.3	0.28	0.2	0.21	0.41	0.8785	0.2902	0.7656	1.9296	0	44352	47101	28290	28495	148238	0.3	0.38	0.16	0.16	0.32	0.8335	0.3478	0.7282	1.8533	23	20	43	558	725	824	1024	3131	0.18	0.23	0.26	0.33	0	0.59	0.8892	0.2628	0.7739	1.9534	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	28922	35356	9130	17489	26410	37834	21814	19653	23757	25372	23135	28209	18420	19893	17579	26752	14564	28234	23974	17368	37409	14876	19061	28196	36232	23269	12642	20364	13437	27026	27535	15511	17837	14043	21351	23779	22203	20013	17971	32494	28167	22094	25086	26309	24145	14892	11357	17488	12732	18226	20024	21017	9401	16303	19280	28777	4385	17979	21478	11930	27357	7103	13061	19307
GCF_004382195.1	NC_045950	NC_045950.1	Drosophila sechellia strain sech25 chromosome 2R; ASM438219v1; whole genome shotgun sequence.	6069754	6068334	4695578	4701958	600	21536224	0.28	0.28	0.22	0.22	0.44	0.9584	0.0008	0.9992	1.9883	1596	1590	3186	4155107	3985101	3348301	3269038	0	14757547	0.27	0.26	0.24	0.23	0.47	0.9195	0.1121	0.8986	1.9844	33417	1404	1348	2752	1079017	883753	1147093	1130334	4240197	0.26	0.22	0.26	0.26	0.52	0.8838	0.2502	0.7941	1.9622	2	1530835	1601295	1125131	1084771	0	5342032	0.3	0.34	0.19	0.18	0.37	0.8526	0.273	0.7767	1.9073	117	64	181	51601	50057	35894	37973	175525	0.29	0.29	0.19	0.23	0.42	0.8747	0.305	0.7572	1.9317	4	63836	64191	42865	40809	211701	0.28	0.4	0.15	0.16	0.32	0.8344	0.4034	0.6999	1.8239	53	45	98	1295	1605	1945	2371	7216	0.18	0.22	0.27	0.33	0	0.6	0.8881	0.2318	0.7994	1.9553	0	83	83	2181	2079	2740	2877	9877	0.22	0.21	0.28	0.29	0	0.57	0.904	0.0482	0.9532	1.9858	29855	38035	9342	17305	27372	40025	22866	19019	25497	26373	21845	27305	18175	21298	17476	28587	14669	29941	26103	17479	41614	15475	20489	27683	38948	25148	13232	20584	13012	28037	28579	15861	18379	13565	21694	26327	23590	21421	20025	36095	31169	25005	24407	29001	25769	14687	11867	18471	12759	18823	21188	22911	9082	16894	19989	29316	4615	19771	23074	12819	28288	7295	13654	21066
GCF_004382195.1	NC_045951	NC_045951.1	Drosophila sechellia strain sech25 chromosome 3L; ASM438219v1; whole genome shotgun sequence.	8119379	8158552	5936140	5917059	500	28131630	0.29	0.29	0.21	0.21	0.42	0.9584	0.004	0.996	1.9821	1480	1512	2992	5117856	4920121	3843039	3775280	0	17656296	0.28	0.26	0.23	0.23	0.46	0.9191	0.1152	0.8961	1.9815	17352	1344	1359	2703	1116337	904153	1151938	1138430	4310858	0.26	0.22	0.26	0.26	0.52	0.884	0.2549	0.7915	1.959	1	2133248	2214397	1460894	1418595	0	7227134	0.3	0.34	0.18	0.17	0.35	0.8531	0.2673	0.7815	1.8953	77	94	171	54126	50296	37567	38732	180721	0.3	0.28	0.21	0.22	0.43	0.8732	0.2848	0.7721	1.9298	0	93137	96450	65172	65610	320369	0.3	0.37	0.16	0.17	0.34	0.8454	0.3329	0.7428	1.8632	32	17	49	679	852	958	1162	3651	0.19	0.23	0.26	0.32	0	0.58	0.8798	0.2397	0.7945	1.9638	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30516	39221	9825	18208	27896	39944	23872	20229	26122	25617	23811	29125	18628	20572	18516	28969	15125	30112	24939	17781	40466	16175	20472	29773	40249	25534	13483	21593	14303	30030	28742	15933	18556	14279	21622	25518	23782	21934	19669	36667	31251	23183	26731	28295	24718	15503	11640	18682	13070	19496	21542	22254	9763	17371	20711	30462	4881	18806	23126	12585	29715	7678	13894	20920
GCF_004382195.1	NC_045952	NC_045952.1	Drosophila sechellia strain sech25 chromosome 3R; ASM438219v1; whole genome shotgun sequence.	8662466	8683409	6559227	6559500	300	30464902	0.28	0.29	0.22	0.22	0.43	0.957	0.0012	0.9988	1.9861	1848	1844	3692	5982280	5762162	4661521	4555995	0	20961958	0.28	0.26	0.23	0.23	0.46	0.9209	0.1085	0.9015	1.9852	44628	1713	1659	3372	1363429	1109400	1438923	1426910	5338662	0.26	0.22	0.26	0.26	0.53	0.8852	0.2442	0.7984	1.9633	52	2465168	2569670	1751589	1693662	0	8480089	0.3	0.34	0.19	0.17	0.36	0.8534	0.2661	0.7817	1.9006	78	91	169	52978	48102	37159	37207	175446	0.3	0.27	0.21	0.22	0.43	0.8824	0.2398	0.8008	1.9515	151	112219	114112	77533	77007	380871	0.31	0.35	0.17	0.17	0.34	0.8494	0.2745	0.7808	1.8796	40	40	80	1173	1364	1487	1914	5938	0.2	0.23	0.25	0.32	0	0.57	0.8848	0.2263	0.8064	1.9682	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	38446	47915	11621	21830	35306	50609	28779	24186	31510	32693	28381	34754	23259	26722	22392	35738	18495	37951	31883	21942	51245	19599	25948	35833	49503	31246	16430	25922	16431	36614	35807	19415	22882	17229	27201	32734	29650	26776	24572	45666	39066	30606	30649	36825	32204	18258	14716	22961	16268	23825	27242	28948	11335	20929	25429	37677	5635	24822	29420	15848	35919	8775	17184	25855
GCF_004382195.1	NC_045953	NC_045953.1	Drosophila sechellia strain sech25 chromosome 4; ASM438219v1; whole genome shotgun sequence.	415974	414290	224092	223349	100	1277805	0.33	0.32	0.18	0.17	0.35	0.9453	0.0037	0.9963	1.9342	50	58	108	327523	314079	171238	170395	0	983235	0.33	0.31	0.18	0.18	0.35	0.9149	0.0832	0.9231	1.9298	0	35	48	83	81499	64736	52720	52703	251658	0.32	0.26	0.2	0.21	0.42	0.8839	0.2515	0.7894	1.9498	0	144365	150229	68691	68631	0	431916	0.35	0.38	0.14	0.14	0.28	0.8398	0.2262	0.8137	1.8226	14	8	22	10755	10260	5671	5673	32359	0.32	0.31	0.19	0.19	0.37	0.8916	0.1789	0.8438	1.9301	0	12042	12020	6243	6475	36780	0.33	0.37	0.15	0.15	0.29	0.836	0.2596	0.7853	1.8368	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	2	2	603	630	411	514	2158	0.27	0.29	0.19	0.24	0	0.44	0.9037	0.1574	0.8569	1.9833	2311	1980	1073	1307	1489	1215	1147	2064	929	1138	2595	2163	1565	1058	1321	1880	1120	1085	1200	1730	1456	803	826	1656	1753	911	1236	1912	1349	1337	1271	1355	856	2035	1913	1124	1119	714	1037	816	1372	601	3428	752	994	1258	624	1127	919	1538	993	808	1832	765	843	1479	721	647	784	651	2630	1301	863	936
GCF_004382195.1	NC_045954	NC_045954.1	Drosophila sechellia strain sech25 chromosome X; ASM438219v1; whole genome shotgun sequence.	6536390	6539579	4915170	4916473	1900	22909512	0.29	0.29	0.21	0.21	0.43	0.956	0.0004	0.9996	1.9854	1207	1264	2471	4571922	4378323	3557186	3481145	400	15988976	0.28	0.25	0.24	0.23	0.47	0.919	0.1145	0.8969	1.984	29704	1068	1134	2202	925184	736241	1072765	1061568	3795758	0.25	0.2	0.27	0.28	0.55	0.8835	0.2461	0.7981	1.959	22	1713889	1776330	1194789	1148623	200	5833831	0.29	0.33	0.2	0.18	0.39	0.8661	0.2668	0.7814	1.9232	97	80	177	52879	48715	35897	37071	174562	0.3	0.28	0.2	0.21	0.42	0.8735	0.3029	0.7606	1.9327	4	110764	116976	74590	75378	377708	0.3	0.38	0.16	0.16	0.32	0.8338	0.341	0.7355	1.8425	12	9	21	311	379	392	510	1592	0.2	0.24	0.24	0.32	0	0.56	0.9009	0.2565	0.7802	1.9682	9	8	17	7292	7361	4598	5845	25096	0.28	0.29	0.19	0.24	0	0.43	0.906	0.1511	0.863	1.9802	26380	32636	7192	13912	27323	38453	20702	14164	22653	22998	19003	21540	15682	20854	14940	24261	12002	27549	20706	11886	38698	14349	18021	25226	39301	22668	10532	16238	9933	24456	26559	11690	17113	10072	18810	23904	21825	19117	15700	36211	31168	26519	16451	31230	23436	11643	11274	14501	10189	17153	21526	25200	6017	14118	18273	28275	3397	20673	24873	12437	24544	4568	10809	19350